Trematomus bernacchii (emerald rockcod): 117471498
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Entry
117471498 CDS
T09643
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117471498 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117471498 (tgfbrap1)
Membrane trafficking [BR:
tben04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117471498 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Prok-RING_1
DUF7742
Motif
Other DBs
NCBI-GeneID:
117471498
NCBI-ProteinID:
XP_033972460
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MSVKAFELVPAVERDLLMGDKARINIECIECCGKHLYMGTNDCFIHHFLLNEVTSSKGKL
TYSAQKLLHKYLGLKKPVAELRAASALERLIVLCDGIVFLVDMVTLETVPSAAGGGAKIR
GVTAFCVNENPVNGDPFCVEMGVISSKKRTVQIYMVYEDRVQLVKEVTTPEQPCAVSVDG
YFLCLALATQYMILNYNTGASQDLFPYNSEDRRPIVKRIGREEFLLAAPGGLGMFANAEG
VSQRAPVNWSESVIGAAVSFPYVVALDESFITIHSMLDQQLKQTLSFRDGHILQDFEGKV
ILASTKAVYVLVPLPLERQIQDLLASHRVEEALILTEGAQQNIPKDKFQILHKRILQQAG
FIQFGQLQFLEAKEHFRNGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLAQGD
QEKVLRFKKFLISYLGEVRSTEVANGCREDVDTALLKLYAEQDHDSLLDLLASDNACLLA
DSVPWLEKYHKYFALGLLYHYNSQDSAALQLWIRVVDGDLQDSTRSGLYEYIVDFLCSCS
NPDLVWKYADWALAKDPTIGVHIFTKRPVSKDVTELNPEDAITYLGKHSQALLLFLEHLV
LERKIKKEKFHTHLAVLYLERVLSLLSEAPADEERLTRARERLQALLRESNLYRAQFLLG
KMENCEQLLLERATLHGKLEENDKALHILVHKLKDFSSAEAFCVWASSCRDSAYQQQLFH
LLLEVYLDRNLPGKSQAAAGGGELEMAAVDLLNRHGEVFDAVRVLRMLPEGWSLQLLRPF
LGRAVRASMHAGRTAQIAVGLAQSENLQLLHDRLKDRKKPIFVSEKKGCHLCHNTFSEPD
VVCLPGGAPVHTHCVAQRVRDSPTKRQLTNSSNHT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcgtttgagcttgtccccgctgtggagagagatctcctcatgggggac
aaggctcgcatcaacatcgagtgcatcgaatgctgtggaaagcacttgtacatgggcacc
aacgactgcttcatccaccacttcctgctgaacgaggtcacttcctccaaagggaaactg
acctactcggcgcagaagctgctgcacaaatatctaggcctcaagaaacccgttgctgag
ctgcgtgccgcctccgcgttggagcgtctgattgtgctctgcgatgggattgtgttcctg
gtcgacatggtgacactggagaccgtgccgtcggcagcaggaggcggagccaagatcaga
ggagtgacagcgttctgcgttaacgagaacccggtgaacggggatccattctgtgtggaa
atgggtgtgatctcctccaagaaacggacggtgcagatttacatggtgtatgaggacaga
gtgcagctggtcaaagaggtgaccacccctgagcagccctgtgctgtcagtgtggacggt
tacttcctgtgcctggccctcgctacacagtacatgattctgaactacaacacaggagcc
tcccaagacctcttcccttacaacagcgaggacaggagacccattgtgaagaggatcgga
agggaggagttcctcttagcagcaccaggtggtctggggatgtttgccaatgcagaagga
gtatctcagcgagctccagtcaactggtcggagagcgtgattggtgctgctgtgagtttt
ccgtacgtggtggctttggatgaaagcttcatcacaatccacagcatgctggaccaacaa
ctaaaacaaaccctttccttcagggatggacacattctgcaagactttgaaggaaaggtc
attctggcgtccactaaggccgtgtacgtgctggttccgctgcctcttgagagacagatc
caggacctactggccagtcacagagtggaggaggcgctcatcctcacagaaggagcacag
caaaatatccccaaagacaagttccagattttgcacaaaaggatcctccagcaggcaggg
ttcatacagtttggacagcttcagtttctggaagcaaaggaacacttcaggaatggtcag
ctggacgttcgggagctgatctctctctaccctctgctgctgccagcttcctcttccttc
acacgctgccaccctcctcttcacgagtttgcagacctgaaccacctggcgcagggcgac
caggagaaagtgctgcgattcaagaaattcctcatcagttatttgggagaggtacgaagc
acagaggtggccaatggctgcagagaggacgtggacacggctctgctgaagctatacgct
gaacaggaccatgacagcctcctcgacctgctagcttcagacaacgcctgcctgctagca
gacagcgtcccatggctggagaaatatcacaaatattttgcacttgggcttctctatcat
tataatagtcaggattctgcagcacttcagctgtggatccgcgttgtagacggggatctg
caggactccaccaggtccggcctctatgagtacatcgtggacttcctctgctcctgctcc
aacccggacctcgtgtggaagtatgcagactgggccttggctaaagatcccacgataggt
gtccacatcttcactaagaggccagtcagtaaggatgtgacggagctgaaccctgaggat
gccatcacatatctggggaagcacagccaggcgctgcttctcttcctggaacacctggtg
ctggagagaaagataaagaaagagaagttccacactcacctggccgtgttgtacctggag
agagttctgtcgctgctgtcggaggcgccagcagatgaagagcgcctcaccagagcgaga
gagcggctccaggctctgctcagggagtccaacctttaccgggcacagttccttctaggt
aagatggagaactgtgaacagctgctgctggagcgtgcaacactacatggtaaactggag
gagaatgacaaagctctgcacatattggtgcacaagctaaaagacttctcgtccgctgag
gccttctgcgtctgggcctcttcttgtcgggattctgcataccaacagcagctctttcac
ctgctcctggaggtgtatctagacaggaaccttcctggaaagtcccaggcagcagcaggg
ggtggagagctggagatggcggcagtggatctcctgaatcgtcatggcgaggtgttcgat
gcagtccgtgtgctgcgcatgctccctgagggctggtccctgcagctgctgcggcccttc
ctgggccgagccgtcagggccagcatgcacgccggccgcaccgcgcagatcgccgtgggg
ctcgcccagtccgaaaacctccaactgctccacgacaggttgaaagaccggaagaaaccg
atctttgtgtctgagaagaaaggatgccacctgtgccacaacaccttcagcgagcccgac
gtggtgtgtctgccaggtggagcgcctgtccacacacactgtgtcgcccagagagtaaga
gactctcccactaagagacagttaactaatagcagtaaccacacgtga
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