KEGG   Trematomus bernacchii (emerald rockcod): 117471817
Entry
117471817         CDS       T09643                                 
Symbol
wdhd1
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1 isoform X1
  KO
K11274  chromosome transmission fidelity protein 4
Organism
tben  Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:tben00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tben03036]
    117471817 (wdhd1)
Chromosome and associated proteins [BR:tben03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Other sister chromatid cohesion factors
    117471817 (wdhd1)
SSDB
Motif
Pfam: WD40_WDHD1_1st Mcl1_mid Beta-prop_THOC3 Beta-prop_WDR5 Ctf4_C WD40 Beta-prop_WDR3_1st WD40_Prp19 HMG_WDHD1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR3_2nd Beta-prop_RIG_2nd EIF3I Beta-prop_HPS5 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_TEP1_2nd HMG_box WDR90_beta-prop_4th WD40_Gbeta Beta-prop_WDR35_TULP_N eIF2A WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_SCAP Tricorn_2nd Beta-prop_WDR75_1st Beta-prop_WDR41 Beta-prop_WDR75_2nd Beta-prop_IFT122_1st NBCH_WD40 DUF6476 Beta-prop_Nup120_160 HMG_box_2
Other DBs
NCBI-GeneID: 117471817
NCBI-ProteinID: XP_033972943
LinkDB
Position
Unknown
AA seq 1131 aa
MPCERKPMRYGHSEGHTEVCFDDSGKFIVTCGNDGDVRIWEGLDDDDPKFITVGEKAYSL
ALKNNKLVTASSNNTVQIHTFPDGDPDGILTRFTTNATHVTFNSSGSRVAAGSSDFMVKV
VEVSDSSQQKTLRGHEAPVLSVTFDPKDDFLASASCDGNVVVWNIKEQSQLISWPLLQKT
NDVSNAKSLCRLAWQPGTAKFLAVPVESKVQLYERESWDHVSTLSDDLLTQLVNVVAWSP
CGKFLAAGSVGGSLNVWDVSSKLCVERQKHEKGFTVCGLAWHPSGSQIAYTDTEGCLGLL
DGLRTSTSNSTNTASKQAAVTKPAKDYDALFDDDDDDRVMDEGQSDTNSPVKKPIAADDD
DDDDDFLMPATGRVRSRAILDDENSLDTGSLKLGQEKFGDDDDMGSGVVPAAPLVPLRPA
YEGPMPTPPQKAFQPGSTPAHLTHRFMMWNSVGIVRDYNDEQDNAIDVEFHDTAVHHAMH
LTNTLGHTMADLSQEAVLLACPGTDELASKLQCLHFSSWDTNKEWMVDLPQGEDVRALCL
GQGWAAVATSALMIRVFSIGGVQREIFSLPGNVVCMVAHGEQLLIVYHRAPGFDGEQALG
VQLLQFGRRKRQLIHGEPLPLSHRSYLSWLGFTAEGTPCYVDSEGAVRMLNRSVGNTWTP
VCNTRETCKSKSNSYWVVGIHENPQQLRCIPCKGSRYPPTLPRPAVAILPFKLPLCQTST
EKGQMEEQYCRSLLFSNHFSFLSSSGYEIDEEAQSQSQKDQQELLMKMFALSCKLEREFR
CVELAELMTQKVVTLAIRYASRSRRMALAQRLSEIALEKSNQIQEVEPEEEEEEEEDYSS
ARRPSGSGQSEAAQGRHSSRRYQEEEEEQEEEQREEEEGREMETDEASETKKRVNPFAKE
AVSPVKNNLTPITKGGRANPFKVLGSGKPSSASGQPRVTNILDNMTTSRKSFPLSGPAGK
QNKNPVLKPLAPRPKTKTQSTLLQMSGTKASNKKTQQNTQPAADTQKQPEAPPPASPADN
TENKRPKTGFQFWLEENRKSITADNPDLEETDVIKEAMGRFRTLSAEDRLSWTERAKTGD
AADLKKRKRAEGGAEGAETEKGQAEADENSAKKKKSLDPSSKLSAFAFNKN
NT seq 3396 nt   +upstreamnt  +downstreamnt
atgccttgtgagaggaagccaatgcgctacggccactcggagggacacaccgaggtctgc
ttcgacgactctgggaagttcattgtaacctgcgggaatgatggagatgttcggatatgg
gagggtctggatgatgatgatccaaagttcatcacggtcggggaaaaggcttactctctc
gcactcaagaacaacaagctggtgacagcgagctccaacaacacggtgcagatccacact
tttcctgacggagatccagatggcatcctgacccggttcaccaccaacgccacacatgtc
accttcaacagcagcggctccagggtcgctgcaggatccagtgacttcatggttaaagtg
gtggaggtgtcggacagcagccagcagaaaaccctccggggacacgaagcgcccgtcctc
agtgtcacctttgaccccaaagacgacttcctggcgtccgccagctgtgacggcaacgtg
gtggtgtggaacatcaaggagcagtctcagctgatcagctggcctctgctgcagaagacc
aatgacgtcagcaacgcaaagtctctgtgtcggctggcctggcagcccggcacggccaag
tttttggcggttcctgtggagtcgaaggtgcagctgtacgagcgagagtcctgggatcat
gtgagcactctgtctgatgatctgctgactcagctcgtcaacgtggtggcctggtctcca
tgtgggaagttcctggcagctggcagcgtggggggttcactgaatgtgtgggacgtgagc
agcaagctgtgtgtggaaaggcagaagcacgagaaaggcttcacagtgtgcgggttggcc
tggcacccgtcaggcagccagatcgcctacaccgacaccgagggctgcctgggtctgctg
gacggactccgcacctccacctcaaactccaccaacactgcctcaaagcaggcagcggta
acaaaaccagcgaaagactacgatgcactgtttgacgatgatgatgacgacagagtcatg
gatgaagggcagagtgacaccaactccccggttaagaaacccatcgccgcggacgatgac
gacgatgatgatgatttcctcatgcctgcgacaggcagggtgaggagcagagccatcctg
gatgatgagaactccctggacaccggatctctaaagctcggtcaggaaaaatttggggac
gatgacgacatgggcagtggcgtcgtgcccgctgccccgctggtgcccctgcgtcccgcc
tatgaggggcccatgccgacgcccccccagaaggcctttcagccgggctccacccctgca
cacctcacacaccgcttcatgatgtggaactcggtgggaatagttcgagactacaacgac
gagcaggacaacgccatcgacgtggagtttcacgacacggctgtgcaccacgccatgcac
ctcacaaacacgctgggccacaccatggctgatctttcccaggaggccgtgctgctggct
tgccccggcacagacgagctggccagtaagctccagtgcctccacttctcgtcctgggac
accaacaaggagtggatggtggacctgccgcagggcgaggacgtgcgggcgctgtgtctg
gggcagggctgggcggccgtggccaccagcgcactgatgatcagagtcttctccatcggg
ggggtgcagagggagatcttcagcctgccggggaacgtggtctgcatggtggcccacgga
gagcagctgctcatagtctaccatcgggctccagggtttgatggggaacaagctctgggt
gtccagctgctgcagtttggtcgaaggaagaggcagctcatccatggggagcccctcccc
ctgtcccacagatcctacctgtcctggctcggattcactgctgaaggcacaccatgctat
gtggattcagagggggcggtccggatgctgaaccgctccgtgggcaacacatggaccccg
gtgtgcaacaccagagaaacctgcaaaagcaaatcaaacagctactgggtggtgggaata
cacgagaaccctcagcaactcaggtgtattccctgtaaaggctcccggtaccctcccact
ctgccccgacctgctgtggccatcctgcccttcaagctgcctctgtgtcagacctccaca
gagaaaggacagatggaggagcagtactgccgctcgctcctcttcagcaaccacttcagc
ttcctgtcgtccagcggctacgagatcgacgaggaggctcagagtcagtcccagaaggac
cagcaggagctgctcatgaagatgttcgcactgtcctgtaagctggagcgggagttccgc
tgcgtggagctggcagagctcatgactcagaaagtggtgactctggccattcgatacgcg
tcccggtccagacgcatggccctcgcccagcggctcagtgagatcgcactggagaaatcc
aaccagatccaagaagtagagccagaagaagaagaagaagaagaggaagactactcgagc
gccagacggccctctgggtctggccagagtgaggctgcacaaggacgtcacagcagccga
cgttatcaggaggaggaagaggagcaagaagaagagcagagggaggaagaggaaggacgg
gagatggagacggacgaggcatcggagacaaaaaaacgtgtcaatccatttgctaaagaa
gcagtttcacctgtgaagaacaatctgacgccaattactaaaggaggacgtgcaaacccc
tttaaggtcctgggctcagggaaaccctcgtctgcgtccggccagcctcgagtgaccaac
atcctggacaacatgacgaccagcaggaagtccttcccactcagcggacctgcggggaaa
caaaacaaaaaccctgtcctcaaaccgctggcccccaggcccaaaacaaagactcagtcc
actctgcttcagatgagcggcaccaaggcgtccaataagaaaactcagcagaacacacag
ccggctgctgatacgcagaaacaaccagaagccccgcctccagcctctcctgccgataac
acagagaacaagaggccgaagacgggcttccagttctggctggaggagaacaggaagagc
atcacggctgataaccccgacctggaggagacggacgtcatcaaagaggccatgggacgc
ttcaggacgctgtcagccgaggacagactgtcctggacggaaagagcaaaaactggagac
gcagcagatctgaagaagaggaagagggccgaaggaggagcagagggtgcagagactgag
aaaggacaggcagaagcagatgaaaatagtgccaagaagaaaaaatctctagatccatcc
tccaagctttcggcatttgcttttaacaaaaactaa

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