Trematomus bernacchii (emerald rockcod): 117471838
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Entry
117471838 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
KO
K16498
protocadherin delta 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117471838
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117471838
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117471838
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117471838
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117471838
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
NT5C
Motif
Other DBs
NCBI-GeneID:
117471838
NCBI-ProteinID:
XP_033972966
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MFNRRHPSLSKRGVIWGLWVILLYTSPPSCFANFSQAKQLIYKIKEGLPGGTFIGAIGED
LHLXISRWSPPFLFNLPQKKVNGQYVNLNSTTGQLYTSATEIDRETLCPDNSGGKXGCVL
SLDVFVLPQQHFQLVKXKIFIEDVNDNRPKFPVDEICMFVPENTHINARFAVEHSAVDPD
LGPYGVQTYWLVNDFGMFTLDVEQNEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTP
PLLGAATLKIVITDVNDNCPKFKESQMNVTLHGNTTKGGHLARLHAFDPDLGANAQISYA
YSERVPRDARSLFHLDRITGVIKLAGKINTGTATFYKLTILANGPGCIPAVATVSVHIIK
VVTGPPAVIPRYIAPENDGELTIKESEPAFSPIAFFTVKNIDINQRVDCHLEGTGPFRLG
PYQTLKNEYLLETTEPLDYEKTQEYELIVVATSSQGLVIKTFLKVQVLDENDNAPVFQQA
LVEVSVEENNPPNTFLTQFQATDQDSEGRGEVIYLLGGDAPGXSCDRSCDRCLTVTTSLD
REEKETYRFIVRAVXTRGTPRRESLATVGVLTVQDRKTNSPRFIDKDFXFFVPENFPGYG
EXGVLSVTDADAEENGWWPVHPQWQRHLLIDTGKGALRAKTSLDREQQGTYQLWIEAVDG
GEPALSCVTMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPNTLPGTSITEVYAVDKDTGMN
AVIAYSIIKRKGGEPGSFAIDPXTGNITLKRELSNRGLYSLLVKVTDHGQPEPLYSTVMV
NFFVNETVSNESYIQSLLTREAGIEVEERPWFKGQMTQGPERYELFPCQPVLIALSVTCL
GLFFTVVTLTSYICCKRFKKQRKKGSEVERPLKKKNDSIQGVNRKLRPISNI
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacagaagacaccccagccttagcaaaagaggagtaatatggggattgtgggtg
atcttgctttacaccagccctccttcctgttttgcaaatttcagccaagcaaaacagctg
atctataagataaaggagggattgccaggaggaaccttcataggtgccattggagaagac
ttacatttgnngatttcacggtggagccccccctttttattcaatcttccacaaaagaag
gtcaatggacagtatgtgaaccttaatagcacgaccgggcagctttacacatctgctaca
gagattgacagggagactctctgtcctgataactccggggggaagnngggatgtgtcctc
tcactggatgtgtttgtgttgcctcagcagcacttccagcttgtcaaangtaagatattt
atagaggatgtgaatgacaacaggcctaagtttcctgtggatgagatctgtatgtttgtc
ccagaaaacactcacatcaatgctcggtttgcggtggagcattctgcagttgacccggac
ctgggtccttatggagtgcagacctactggcttgttaatgactttggaatgttcacactt
gatgtagagcagaatgagggaggcgagctgactcccttcctcattgtgactgaggctttg
gacagagagacccaggctgaatatataacagatatcatagcagaggacggtgggacccct
cctcttcttggagcagctactttgaaaattgtcatcacagatgtgaatgataactgcccc
aaattcaaagagtcacaaatgaatgtcactctgcatgggaataccaccaaagggggacat
ttggcacgtctgcatgcttttgaccctgaccttggtgctaatgctcagatcagctatgct
tacagtgaacgtgtgccaagggacgccaggagcttgttccatttggacaggatcacagga
gtgatcaagctagctgggaagataaacaccggtacagccacgttttacaaacttaccatt
cttgccaatggacctggttgtatccctgcagttgcaactgtttctgtccatatcatcaag
gttgttactggaccccctgcagtcattccccgatacattgcaccggaaaatgatggggag
ttgacaataaaggaatctgagccagccttttctccaattgctttttttactgtcaaaaat
attgatattaaccaaagagtggactgtcatttagaagggactggtcccttcaggcttggc
ccttatcaaacgttgaagaatgaatacctgttggaaactacagagcctctggattatgag
aagacacaggagtatgagctaattgtggttgctacgagttctcaagggcttgtcatcaag
accttcctcaaggtgcaagtattggatgagaatgataatgcaccagtgtttcagcaggct
ttggtggaagtatctgtagaagagaacaatccgccaaatacctttctgacccagttccaa
gccacagaccaggacagcgaaggtcgaggggaagtcatctaccttcttggaggagacgcc
ccagggnnatcttgtgatagatcgtgtgacaggtgtctgactgttaccacatcgctggac
cgtgaggagaaagagacctaccgtttcatagtgagagccgtatagaccagggggacaccc
aggagggagtcgcttgcaactgtaggtgtgttgactgtgcaagaccgcaagacaaacagt
ccacgcttcatcgataaggacttcnacttctttgtgccagagaacttcccgggatatggt
gaantcggtgtcctctctgtgactgatgccgatgctgaggaaaatggttggtggcctgtc
catcctcaatggcagcgacatcttctgatagacacaggcaaaggggcactgagggccaag
acctcactggaccgtgagcaacaagggacatatcagctgtggatagaggccgtcgatggt
ggagagcctgctctgtcctgcgttactatggtcacagtgctgttgttggatgtaaatgac
aacccacctattgtcctcttcccccagtccaatcagtcttacatgctggttttacccaat
acactaccaggaacatcaataacagaagtctatgctgtggataaggatacaggaatgaat
gctgtgatcgcctatagtatcattaagaggaaagggggagagccagggtcatttgccatt
gacccangaacaggaaatatcacattaaagagggagcttagcaatcggggcctctacagc
cttctggtgaaggtcactgatcatggtcagcctgaaccgctttactcaacagtcatggtt
aacttctttgtcaatgaaactgtgagcaacgagagctacatccagagcctgttgaccagg
gaggctgggattgaggtagaggagaggccctggtttaaaggccagatgacacaggggcct
gagaggtatgagttgttcccctgtcagcctgtccttattgctctttctgtgacatgtcta
ggacttttcttcacagttgttactctgacatcttacatatgctgtaaaagatttaaaaag
cagcgaaagaaaggatcagaagtggagagacctttgaaaaagaagaatgactcgattcag
ggtgtaaacagaaagctcaggccgatatctaacatctga
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