Trematomus bernacchii (emerald rockcod): 117472063
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Entry
117472063 CDS
T09643
Symbol
si:ch211-186j3.6
Name
(RefSeq) LOW QUALITY PROTEIN: neural-cadherin
KO
K27892
neural-cadherin
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117472063 (si:ch211-186j3.6)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Cadherin related
117472063 (si:ch211-186j3.6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_Shg
Cadherin_pro
EGF
CADH_Y-type_LIR
Cadherin_4
Fibulin_C
hEGF
RET_CLD1
Big_9
cEGF
Motif
Other DBs
NCBI-GeneID:
117472063
NCBI-ProteinID:
XP_033973111
LinkDB
All DBs
Position
Unknown
AA seq
2952 aa
AA seq
DB search
MIWVAFLPFLVSCAHGNRTVEQVPFFHGHVFENSSPGSRVNGLSVPLKRLNSERLCGTGE
FAAHFKLLGDGSVNFRVFAHNTRGHILLKTSAVLDREERGEYALSLGLCCGQCAGLSREV
EEQSPVVTEVASIKVDVLDTNDHQPTFTGNDVKLSLDDATALRTAIYTVTARDGDSGKNA
ELIYFALPRNGSFYAVPKTGDILLVDSILGLDEPIKFKVFARDRGWPPRTSQGKDVEINP
RQWPVAPSLNTQQGGSQIKVPARRSRSVLESDSPVLINVSEDAGIGSVVMNLNPVRFQAA
AFELVEPDAESSPVSVSRDSGDIVISRKLDRETEPLVEISVKVQDKRGPEWYLVRVELTV
TDVNDNIPEWSMIPAPYLAVVSSDAPAGSLVYKLHAQDGDEGNNGEVEYFMSDGGEGRFE
VDRKNGQVRTTGLPLQRDREYLLTVVAADRLGSRSAPVVVSVVAGARPPQFTNASFTIAI
PENTPEGQPFLVTPAVSFQKKPISYSLLINPSSLFSISAETGEISLTRPIDYESDQHRYL
LLVRASEGLDSMSSAAEVRVVIVDENDCVPEFLQSIYSKDGVPETVTTATSLLQVSASDC
DSEENAELTYYTLSPDFTISPHGTIFPAGPLDFERPNHLYEFVVMAIDKGEVPRTGTTTV
RIRMANVNDEAPEFSQHIYRTFVSEDAGPNTLVATVLAKDPDGDGITYKINTGNEEGNFI
IDSQKGLIRLRSSPPPHLQGVEYVLNVTATDDNSSGGPQALSSTAQVIVGVDDVNNNKPV
FEKCQQYRESTSVLENQPAGTFVLQVHAVDADEGSNGRVTYGFMHKDSTVPAFSIHPDTG
VIVTARKFDRERQREYAVTVTATDRAADPLIGICQLNILILDQNDNSPKFENIRYEYFLR
EDTMIGTSFLRVAAHDDDFGTNAAITYSMSSEQPEYLGVNPLTGWVYVNQPISQRTYITR
EIVATDGGNRSSSVELSVTITNVKNQPPQWDKDSYSMVIPENTVRDTPIVTIKATSPLGD
PRVTYNLEDGMVPETNMPVRFYLTPNREDGSASILVAEPLDYETTRHFMLRVRAQNVAAV
PLAAFTTVYINVTDVNDNVPFFTSSIYEASVTEGAESGTLVFQVSAADLDLGLNGKISYS
LLEDRSGDHQYFRIDPELGFIYSQTVFDRETKSSYLLEVQSVDGWESARPGKHGQPNSDT
AYVRVFISDVNDNKPAFAKASYEVDVDEDADVGFAILTVSANDGDEGGNAKLRYQITSGN
TGGVFDVEPEVGTIFIAQPLDYEQNKRYKLHVLASDGKWEDYSTVTVNVVNKNDEAPVFT
VNEYYGSVTEELDGSPVFVLQVTASDPDKDADQEALRYSLHGQGAESEFIIDEVTGKIYA
QRTLDREERAVWRFVVLATDEGGEGLTGFTDIIINVWDINDNAPIFTCAPSCLGDVAENS
VVGTSVMEMTATDLDDSAVGQNAVLSYRITGSLDATNVEVGGVPTFSEMFTINPTTGTIT
VAMGGLDREQVESYLLVVEARDGGGMMGTGTATIQIKDVNDHAPRFTDRSCMTRISENAE
VNAEVLEIVAEDRDTGENAQLTFSVVAGDQEQKFYMVSHKQEQRGTLRLKKRLDYERHSE
QRFNLTLKVEDLDFSSLLHCVVEVEDYNDHAPVFIPHLLSLAPLPEDISVGTSVARLVAS
DSDSGQNREITYSLTEDSDPEGLFTIDQSGVLSVARPLDREKIARHSLVVMATDHGVPPL
TGSATVQLPLLDVNDNGPEFEAAYSPVVFENVAGPQVVRMNQTSTLLRAVDRDSPENGPP
FHFTVPPEYRHSNDLYLQDNLNGTATLTALRTFDRERQKEFLIPIIMSDSGHPAKTVTST
LTVTIGDQNDHPHVAGEKKIFINSHRGRMPTTVLGKVYSPDPDDWDNKTYVFEGHMPSYF
ILNKRTGFLIIKENAPTGAYEFQVRVSDGVWPDAVSTITVHVRELRDEAIYNSASLRLAD
ITAKEFIELRGKQRSRYELLVDFLSKMLYVPPDDINIFSLMDVKVQMLDVRFAVHGGATF
LQPEKIHGYLTAHKQKLQSFLQVNVFQIRVDECPGSECGGAGGCSNVLNVRDTPTVVDCG
TMSLVSVTVESTAVCSCSGREQSHQPCNTYPRNPCFNGGVCVDTQHGYRCQCPAQFEGPE
CQQNKHSFHGNGFAWFPPMMPCFESHVSLEFITDVADGLLLYSGPLAQLQAWDQEDFMAL
ELIDGTPTLKINHGSGTVVLQLPGNVNVADRRWHRLDVRSNSKEVRFTLDRCSGAAVMEM
EGLGSWLTTEDHSSCEVTGVTPNTDRHLNMSQVLQLGGVNEDIPYVYPQLQHKHFSGCIR
NLIVDSKLYDLGSPADSNSSSPGCLTTDSSCVNMGYPSCGHRGRCHGEWGSFSCQCVPGY
AGHQCEEEVPEYSFDGHSHAHFQLPSTLPARRTWVQVLVRTRKHSSTILNLISKEQSEYI
RLEIFQGLLCVFYNLGDGDYNLTLPTYRLDNGEWHEVFLDRHDNEMMLRLDGGGGQREVT
GAQGRSREIIIDPTVVMLGNTFPSGTNKSFQGCMRDVRLNGRYMPLDSQPRDGVSQVSVQ
GVSLGCSSDSCKRNQCSPPFTCVDLWRVHECRCPPGHMIRVNVTRKSCVYTLCATRPCHR
GTCVAQSPSKFTCHCPEGYRGRHCETTLAIYREDVGLSFSSLFAICICFMALLVLLLGIF
LYTRWRSYKGLKEGVYHVSAHHDGWEDIRENVLNYDEEGGGEEDQNAYDMAELQKSLQPS
PAQSVQYCRSRALHHPPPPPLHHHHHLLLHQAPPAPPCAQQLDMLSRTTCSTTLPPSAAS
SCSTATSNTASLRRDVPPTRLPAQGQARPSQLARRSLSFSSQDLARYLCEIIRDADQHPD
TGPFDSLQVFSTEGGGSPAGSLSSFSSAGLDGGSVGDGGGGGEGRREETLGEWGPRFEKL
RALYERAEASDL
NT seq
8859 nt
NT seq
+upstream
nt +downstream
nt
atgatttgggtcgcatttctaccttttttggtttcgtgcgctcacgggaacaggaccgtg
gagcaggtgcctttcttccacggccatgtgtttgagaactcgtctccgggctcgcgggtc
aacggactgagtgtcccgttgaagcggctcaactcggagcggctgtgtggtaccggggaa
ttcgcggcgcactttaaactcctgggagacgggagcgtgaatttccgggtctttgcgcac
aacacacgggggcatattttactcaagacttctgcggttctggatcgagaggagcggggt
gagtacgcgctgagtctcgggttgtgttgcgggcaatgcgcgggactctcccgggaagtg
gaagagcagtccccggttgtcactgaggtggcgtccatcaaggtggacgtcctggacacc
aacgaccaccagcctactttcactgggaatgatgtgaagctgagcctggatgatgccact
gcactccgcacggcgatctacacggtgaccgcgcgggacggggacagcggtaagaacgcg
gagctcatctacttcgccttgcccaggaacgggagtttctatgcggtgcccaaaaccgga
gacatcctcctggtggactccatcctcggtctggatgaaccgattaagtttaaagtgttt
gcccgggaccgcgggtggccacctcgcacgagccagggtaaagatgtggagatcaatccg
cgccagtggcccgtggcgccctctctgaacacccagcaggggggatcgcaaataaaagtg
ccagcgcgaaggtccaggtcagtgctggagtcagacagccccgttttaatcaacgtgtcc
gaggacgcagggatcgggtcagtggtgatgaacctgaacccggtgaggtttcaggccgca
gcgtttgagctggtggagcccgacgcggagagctcaccggtgagcgtgagccgggacagc
ggggatatagtgatatcacggaaactggaccgagagacggagcctctggtggagatcagc
gtcaaagtgcaggacaagagaggtccagagtggtacttggtcagagtggagctgacagtg
acagatgtaaatgataatatcccagaatggagcatgattccggctccatacctggcggtg
gtctcctccgacgcccccgcaggctcgctggtctacaagctgcacgctcaggacggggat
gaagggaacaacggggaggtggagtacttcatgtctgatggcggtgaaggtcgtttcgag
gtggacaggaagaacggccaggtgcggaccaccggcctccccctgcagcgggacagggag
tacctgctgaccgtggtggctgccgaccggctggggagccgcagcgcccctgtggtggtc
tctgtggtggcgggggcccggcccccccagttcaccaacgcctccttcaccatcgccata
cctgaaaacacccctgaaggacagccattcctagtcacccctgctgtgtccttccagaag
aaaccaatcagctacagccttctcatcaatcccagcagcctcttctccatctcagcagag
accggtgaaatcagcctgacccgtcctatcgactacgagagcgaccagcatcgctacctt
ctgttggtgcgagccagcgagggcctggacagcatgagcagtgctgctgaggtacgagtt
gtcatagttgatgaaaacgactgcgttccagagttcctccagtccatctacagcaaggat
ggcgtaccggagactgtgacaacggcaacgtccctgctgcaagtgtcagccagtgactgt
gactccgaggagaacgcagagttgacctactacacgctgagtccagacttcaccatctcc
ccccatgggaccatcttccctgcggggcctctggacttcgagaggcccaaccacctgtac
gagttcgtagtgatggcgatcgacaagggggaggttcctcgcaccggtacaaccaccgta
cggattcgaatggcaaacgtcaacgatgaggcacctgagttctcccaacatatataccgg
accttcgtctcagaggatgccggtcccaacacgcttgttgccacggtgctggcgaaggac
cctgacggggacgggatcacgtataagatcaacacaggaaacgaggagggcaactttatc
atcgacagccagaaaggtttgatccgccttcgctccagcccgcccccccacctccagggt
gttgaatatgtcctcaatgtcacggcaaccgatgacaactcctcaggcggacctcaggcc
ttgtcgtccacagcccaggtcatagtgggagtggacgatgtgaacaacaacaagccggtg
tttgagaagtgtcagcagtaccgagagagcacatcggtcctggagaaccagccggccggg
acgtttgtcctgcaggtccatgcagtggacgctgacgagggctccaatggcagggtcaca
tacggcttcatgcacaaagactccaccgtacctgcattcagtatacacccagacacagga
gtaattgtgacagccaggaagtttgatcgcgaacgccaacgggaatacgcggtgacagtg
actgccaccgaccgggccgctgaccccttgattggcatttgtcagctcaacatcctcatc
ctggaccagaacgacaacagtcccaagtttgagaacatccgttatgagtacttcctccgt
gaggatacaatgatcgggactagcttcctgcgggtggcggctcatgacgatgacttcggc
accaacgcagccatcacgtactctatgtccagtgaacagccggagtacctcggggtcaac
cccctgacgggctgggtgtatgtcaaccagcccatttctcagaggacctacatcaccagg
gagattgtggctacagacggggggaacaggagcagttctgtggagttgtctgtcaccatc
accaacgtgaagaaccagcctccacagtgggacaaagacagctacagcatggtcataccc
gaaaacaccgtcagagacacgcccatcgtgaccatcaaagccacctcccctcttggggat
ccgagggtgacgtataacttggaggacggcatggtcccagagaccaacatgccagttcgc
ttctacctgacccccaacagagaggacggttcggcctccatcctggttgcagagcccctg
gactatgagaccaccagacacttcatgctgcgagtccgggcccagaacgtggctgctgtt
ccgctggcggccttcaccacggtctatatcaatgtcacagatgtaaatgacaacgtccca
tttttcacttcctccatctacgaggcttcggtcactgaaggggcggaatcaggaaccttg
gttttccaggtctcagccgctgacctcgacttgggtctcaatggcaagatctcctactcc
ctgctggaggaccgcagtggagaccaccagtacttccgtattgaccccgagctgggattc
atctactctcagactgtgtttgaccgcgagaccaaaagctcctacctgttggaggttcag
tctgtggatggctgggagtcagctcggcctggcaaacatggacaacccaactctgacaca
gcgtatgttcgtgttttcatcagcgatgtgaacgataacaagccagcgttcgcaaaggcg
tcctatgaagtcgatgtggatgaggacgctgacgtaggcttcgccattctcaccgtcagt
gccaatgatggggatgaaggaggaaacgctaagctgcgctaccagatcacatcagggaac
acgggaggggtgtttgatgtagaaccagaggtgggcactatcttcatcgcccagccgctg
gactatgagcagaacaaaaggtacaagctccatgtcctggcttcagatggaaagtgggag
gattactcgactgtgacggtgaacgtggtcaacaaaaatgacgaggctccggtgttcacc
gttaacgaatactacggcagcgttacagaggaactggacggatcaccggtgtttgtgtta
caggttacagcatcagatccagataaagatgctgaccaggaggccctgcgctactctctc
catggccagggtgcagagagcgaattcataatcgatgaggtcacagggaagatctacgcc
cagcggacactggatcgcgaggagcgtgccgtttggcgttttgtcgtcttggccacggac
gagggcggcgaaggtctgacgggcttcaccgacatcatcattaatgtgtgggacatcaat
gacaacgcgcccatcttcacctgcgccccaagctgcctcggagacgttgcggagaactct
gtcgtggggacgtcggtgatggagatgacggccaccgatctggacgactcggcggtgggc
cagaacgccgtgctctcctacaggattaccgggagtttagacgccacaaacgtggaggtg
ggaggagtgcctaccttctcagaaatgttcacgatcaatcccaccactgggaccatcact
gtggccatgggaggcctcgacagagagcaggtggagtcctacctcctggtggtggaggcc
agagatggcggagggatgatgggaactggaactgctaccattcagatcaaggatgtgaat
gatcacgctccgagattcacggatcgctcctgcatgacaaggatctctgagaatgcagag
gtcaatgcagaggtcctggagattgttgcagaggacagagacactggagaaaatgcccag
ctgaccttcagtgttgtggctggagaccaagagcagaagttctacatggtgagtcacaag
caggagcagcgtggcaccctgaggctgaagaaacgtctcgactatgaacgacacagcgag
cagaggttcaacctcacactgaaggttgaggacctggacttctccagcctcctgcactgt
gtggtggaggtggaggactacaacgaccatgctcccgtcttcattcctcacctcctgtct
ctggcccctctccctgaggacatcagcgtggggaccagtgtggcccggctggtggccagc
gactctgattcaggccagaaccgcgagatcacctacagcctgacagaggactcagaccct
gaagggctcttcaccatcgaccagtcgggtgttctctccgtggcccggcctctggatcga
gagaagatagcacggcattccttggttgtcatggcaacggatcatggggttccacctcta
acaggcagcgccactgtccagctgccactgttggatgtaaacgacaacggaccggagttt
gaggcggcgtactccccagtagtctttgagaacgtggcaggcccacaggtagtaagaatg
aaccaaacgtcgactctcctgcgggctgtggaccgggactccccagagaacggtccgccc
tttcacttcacagtcccccccgagtatcgccatagcaatgatttgtacctccaggacaac
ctaaacggcaccgccactctaacagctctgaggacgtttgaccgcgagcgccagaaagag
ttcctcatccctattatcatgagtgacagtggccatccagccaaaacagtgaccagcacc
ttaaccgtgaccatcggggaccagaatgatcacccacatgtggcaggggagaagaagatt
ttcatcaatagtcacagaggccgtatgccaacaacggtgcttggaaaggtctactccccc
gaccccgatgactgggacaacaagacgtacgtgtttgaaggacatatgccaagttacttc
atcctgaacaagcgaacaggcttcctgatcatcaaggagaacgcccccacaggcgcctat
gagttccaggtccgtgtgtcggatggagtttggccagatgctgtctctaccatcactgtg
cacgtgagggagctgcgagacgaggccatctacaactcagcgtctctgcgcctggcagac
atcacagcaaaggagttcattgaactgagagggaagcagcggagccgctacgagctgctg
gtggacttcctgtctaagatgctctacgttccacctgatgatatcaacatatttagccta
atggatgtgaaggtgcagatgctggatgttcgctttgccgtgcacggtggcgccaccttc
ctccagccagaaaagatccatggttatcttaccgcccacaaacaaaagctccagtcgttc
ctgcaggtcaacgtgttccagatccgggtggatgagtgtccgggctctgagtgtgggggg
gccggcggctgcagcaacgtcctgaacgtgcgggacacgcccacagtggtggattgcggg
accatgagtcttgtatctgtgacggtggaatctacggctgtgtgctcctgctcagggaga
gagcagtcccatcagccctgcaacacgtatcccagaaacccctgcttcaacggcggggtg
tgtgtggacacccagcatggctacaggtgccaatgcccggctcagtttgaagggcctgag
tgccagcagaacaaacacagtttccatggcaacggctttgcttggtttcctcccatgatg
ccttgtttcgagagccatgtgtcgctggagttcatcacggacgtggcggatggactgctg
ctgtacagcggtcccctcgcccagctgcaggcctgggaccaggaggacttcatggcccta
gagctaatagatgggacccccaccttgaaaatcaaccacggctctggcacagtggtgcta
cagttgccaggcaacgtgaacgtggcagacaggcggtggcatcggctggatgtccgcagc
aacagcaaggaagtgcgattcaccctggatcgttgttcaggcgccgcggtgatggagatg
gaggggctgggcagctggttgaccactgaggaccactcctcctgtgaagtgaccggcgtt
acccctaacactgacagacacctgaacatgagccaggtgctgcagctcggcggagtgaac
gaggacatcccatacgtctaccctcagctgcagcacaaacacttcagcggctgcatccgc
aacctcatcgtggacagcaagctgtacgatctgggctccccggctgactccaactccagc
tctcccggctgtctgaccaccgacagcagctgtgtcaacatgggctatccgtcctgcggc
caccggggacgctgtcatggcgagtggggctccttcagctgccagtgtgtgccaggatac
gcgggccaccagtgtgaagaggaggtcccggaatattcctttgatgggcacagtcacgca
cattttcaattgccgtccacgctgccggcccgaaggacatgggttcaagtcctggtccga
acccgcaaacacagcagcaccatcctcaatctgatctccaaggagcagagtgaatacata
cgactggagatcttccaaggcctcctctgtgttttctacaacctcggtgacggggactac
aacctaaccctaccaacttatcgcctcgacaacggtgaatggcacgaggtcttcctagat
cggcatgacaatgagatgatgctgcgtctggacggagggggaggacagcgggaggtcaca
ggggcgcagggccggagcagagaaatcatcattgaccccaccgtggtgatgctgggaaac
accttcccctctggaaccaacaagagcttccagggctgcatgagagatgtacgcctcaac
ggccgctacatgcccctggacagccagccgcgtgatggggtttcccaggtcagcgtccag
ggcgtctcccttgggtgctcttctgactcctgcaaaaggaaccaatgtagcccccccttc
acctgtgttgacttgtggagagtgcacgaatgcagatgtcctcctggtcacatgatccgt
gtgaacgtgaccaggaagtcctgtgtgtacaccctgtgtgcgacccggccctgtcaccgg
ggcacctgcgtggctcagtcgccctccaagttcacctgccactgccccgagggctacaga
ggacgccactgtgagaccacgctggccatctaccgcgaggacgtgggcctgagcttcagc
tccctctttgccatctgtatctgcttcatggccctactagtgctgctgctgggcatcttc
ctgtacacgcgctggaggagctacaaggggctgaaggagggcgtgtaccacgtctccgcc
caccacgacggctgggaggacatccgggagaatgtcctcaactatgatgaggagggaggc
ggggaggaggaccagaatgcctacgacatggcggagctgcagaagtccctccagccgagc
ccggcccagtcggtccagtactgtcgctccagagctctgcaccaccctccccctcctccc
ctccaccaccaccaccacctcctcctccaccaggcgcccccggccccgccctgcgcccag
cagctggacatgctcagccggacgacctgctccaccaccctgcccccctccgcggcctcc
tcctgctccaccgccacctccaacacggccagcctccgtagggacgtcccccccaccaga
cttccggcgcagggccaggcccgcccctcccagctggcccgccgctccctgtccttctcc
agccaggacctggcgcgctacctgtgtgagatcatccgcgacgctgaccagcacccggac
acggggcccttcgactccctgcaggtgttctccaccgagggaggggggtcgcccgccggc
tccctgagctccttcagctcggcagggctagatggagggagcgtgggggacgggggtgga
ggaggggaggggaggagggaggagacactcggggagtgggggccccgcttcgagaagctg
cgggccctgtacgagcgggccgaggccagcgacctctga
DBGET
integrated database retrieval system
