Trematomus bernacchii (emerald rockcod): 117472799
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Entry
117472799 CDS
T09643
Symbol
tnc
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
tben04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117472799 (tnc)
04518 Integrin signaling
117472799 (tnc)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117472799 (tnc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117472799 (tnc)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117472799 (tnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_Tenascin
EGF_2
FN3_DSCAM-DSCAML_C
DUF7949
Fn3_Dep-1_3rd
Pur_ac_phosph_N
Fn3_Dep-1_2nd
Fn3_VIN3
EGF
FN3_Tor_3rd
fn3_2
Fn3_Dep-1_1st
hEGF
Motif
Other DBs
NCBI-GeneID:
117472799
NCBI-ProteinID:
XP_033974094
LinkDB
All DBs
Position
Unknown
AA seq
1692 aa
AA seq
DB search
MGIKGFLLGFVTLTLLLEISTAGLVKKVIRHRRDALSPKQTQENITLPHSDQPVVFNHVY
NINVPSTSLCSVDLDAPGDTDLKQKSAPMDMQNSEHMEHTMDGDNQIVFTHRINIPKQAC
GCDNQLPDIKDILSRLEMLESELSSLREQCSGGTGCCGAQVTGEVSTKPFCNGHGNWSTE
TCSCICEPGWKGPNCTEPECPNDCQDQGRCVDGKCECFEGFGGDDCSSELCMLDCGDYGH
CVEGFCLCEDGFIGEDCAQTNCLNNCLGRGQCVEDECVCDEPWTGFDCSELICPNDCYDR
GRCVNGTCFCEEGYTGEDCGDLTCPGNCNNRGMCVNGQCVCQTGYSGEDCSKLTCPKNCN
ERGHCFNGKCICDPGYEGEDCSILSCPDNCSNRGQCVNGECVCDVGFQGEDCSELSCANN
CQDRGRCVNGKCICNKGYGGEDCSTKTCPKDCMGRGECVDGKCVCFVGFSGKSCGELTCP
NDCLDQGRCVNGQCVCHKGFTGEDCSEKTCPKNCLERGYCVDGECVCYEGFTGSDCSMLT
CPENCQNQGRCDNGVCICDEGFLGEDCSEVSPPKELTVEEVSPETVDLSWKNAMRVTEYL
ITYVPTAVGGLELDMRVPGDQLMTTIKELEPGVEYLISVYAVLINKKSLPVSARVATHLP
EPEGLKFKSVRETSVEVEWDPLDIPFDGWNIIFRNTKEEDGEILNSLGRPETTFEQSGLG
PGQEYEVKLEVVKNNKRGPPASQNVVTMIDAPSQVDVRDVTDSTALVTWSQPVAQVHGVS
ISYGPSSNPADRSVVELSSSDTQYHLGGLSPDTQYEVSLSSRMGEQSSIPVFQSFLTDLD
APKDLQTVELTDESITLEWKNSQAPVENYRIKYGPLSGGEHGELLFPPGPRDTTTAKITG
LRPGTEYGMGVTAVTDERESRPTTTNAVTALDAPKDLAVTEVTETTMMLQWKRPLAKLDS
FRLVYVSADGHRAEDVLPGSSESHLLRGLTAGMLYTVSIIAERGRRTSAPSTISAATEEE
KPVVVNVTVSDVSWDSFLLSWATEDRRLEGFLIEVTDAETGSEWQNHTVSADARSIAISG
LSSSTWYRANLYGVYRGALLEPVFADTITEAEPEVQALLVSDVGPESFKLAWVAEEDAFD
TFVIMVSQVEPGQPRELVLGGDERSTNITDLTEDTDYEIQIFGLFLGRPSKSVMEEVITD
LGSPKGIRFSDVTDTSATVHWVVPRARVDSYKVTYVPAHGGNAKTLTVEGSEAHTVLSNL
TPGVTYEVTVVSVKGQRESEPGSDSVTTALDKPRGLTAVNITDSEALLLWQPAIATVDGY
VITYSADSVAPVMERVSGNVVEFDMSSLTPATHYTVKVYAVRDLSKSAATTTEFTTDVDA
PQDLAGSNIQTESGLLSWKPPRADITGYILSFESADGTIREVVLSPNAVSYNMAQLSAST
QYSVKLQAIAGPKRSRVITTTFTTTGVLYRYPRDCSQALLNGDTSSDLYTIYLGGDESQP
VQVYCDMATDGGGWIVFLRRQSGRLEFFRNWKNYTAGFGDMNDEFWLGLSNLHKITVGGP
YELRVDLRDKGETAFAQYDKFSISEPRSRYKVHVGGYSGTAGDSMTYHHGRPFSTYDHDN
DIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIRPS
NFRNLEGRRKRS
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgggcattaaaggcttcctcttgggctttgtgaccctgaccctgctcctcgagatctcc
actgctggcctggtcaaaaaggtcatccgccaccgaagagatgctctgagtccaaagcaa
acccaggagaacatcaccctgccccactccgaccagccggtggtgttcaaccacgtctac
aacatcaacgtcccctccacgtccctctgctccgtggacctcgacgcccctggtgatacc
gatctcaaacaaaagagtgccccgatggacatgcagaacagcgagcacatggagcacacc
atggacggagacaatcagatcgttttcacccaccgcatcaatatccccaagcaggcgtgc
ggctgcgacaaccagctgcccgatatcaaggacatcctgagcaggctggagatgctggag
tccgagctgtcgagtctgagggagcagtgcagcggagggacgggctgctgtggggctcag
gttacaggtgaagtgtccacaaagcccttctgtaatggccatggtaactggagcactgag
acctgcagctgcatatgtgagcctggatggaagggccccaactgcaccgagcctgagtgc
cccaacgactgccaggaccagggccgctgtgtggacggcaaatgcgagtgctttgagggc
tttggtggggacgactgcagcagtgagctctgcatgctggactgcggtgactatggccac
tgtgtggagggcttctgcctctgtgaggacggcttcatcggcgaggactgtgcccagacc
aactgcctcaacaactgcctcggccgcgggcagtgcgtagaggacgagtgtgtctgcgac
gagccgtggacgggcttcgactgctccgaactcatctgtccaaacgactgctacgaccgc
ggacgctgtgtcaacggcacctgcttttgtgaagagggctacaccggagaagactgcggg
gacctcacctgtcctggcaactgtaacaaccgtggcatgtgtgtgaacggccagtgtgtg
tgccagaccggctacagtggagaggattgctccaagctcacctgtcccaagaactgcaac
gaaagaggccattgcttcaacgggaaatgcatctgtgatccaggatatgagggtgaagat
tgctccatcctctcctgccccgacaactgtagcaataggggccagtgcgttaacggagaa
tgtgtgtgtgacgtaggcttccaaggcgaagactgtagtgagctctcttgcgctaacaat
tgccaagaccgtggtcgttgcgttaacggaaagtgcatttgtaacaaaggctacggcggg
gaggactgcagcaccaagacctgtccaaaagactgcatgggacgtggagagtgcgtggac
ggcaagtgtgtgtgcttcgtcggcttctctgggaaatcctgcggcgagctgacctgcccc
aatgactgcctggaccaaggtcgctgtgtcaacggacagtgcgtctgtcataagggcttc
actggcgaggactgcagcgagaagacctgtcccaagaactgtcttgagagaggttactgc
gtcgatggcgagtgtgtgtgttacgaaggtttcaccgggtcggactgctccatgctgacc
tgcccagaaaactgccagaaccagggacgctgtgataacggagtttgcatttgcgatgag
ggcttccttggagaggactgctctgaagtctccccaccaaaggagctgacagtggaggag
gtcagcccagagacggtggacctgtcctggaagaatgcgatgcgtgtcacagagtatctg
atcacatatgtaccgacggccgttggaggtctggagctggacatgcgggtgcctggggac
cagctgatgaccaccattaaggagcttgagcctggtgtagagtacctgatcagtgtctat
gctgtgcttatcaacaagaagagtcttccagtcagcgctcgggtggctacacatctgcct
gagcctgagggactgaagttcaagtcagtgagggagacgtcagtggaagtggagtgggat
ccgttggacattcccttcgacggctggaacatcatcttcagaaacacgaaagaggaagat
ggtgagattcttaactccctcggccgtcctgagaccacctttgagcagtcgggcctgggc
cccggccaggagtacgaggtcaagctggaggtggtaaagaacaacaagcgtggaccgcct
gcctcccagaacgtggtcacaatgatcgacgcccccagccaggtggatgtgcgcgacgtg
acggactccacagcgctggtcacatggtcccagcccgtggctcaggtgcacggggtcagc
atctcctacgggcccagctccaaccccgcggatcgcagcgtggtggagctgtcctccagt
gacacccagtaccacctcggaggcctctcccccgacacccaatacgaggtgtctctgtcg
tctcgcatgggcgagcagagcagcattcctgtgttccagtctttcctcacagacctggat
gcccccaaagacctgcagacagtggagctgacggacgagagcatcactcttgagtggaag
aacagccaagctccagtggaaaactatcgcatcaagtacgggcctctgtcagggggggag
cacggagagctgctcttcccccccggaccccgggacaccaccacagccaagataactggc
ctgagacctggcacagagtacgggatgggcgtaaccgcggtgacggatgagcgggagagt
cggccgacgaccaccaacgcagtaactgcgctggatgctcccaaggatctggctgttacg
gaggtgacggagaccaccatgatgctgcagtggaaacgccccctggctaagctggactcc
ttcagactggtgtacgtgtcggctgacggccacagggcggaggacgtgttgccgggcagc
tccgagtcccacctcctgaggggcctgacagccggcatgctgtacaccgtcagcatcatc
gctgagaggggccgcaggaccagtgcacccagcaccatctcagcagccacagaggaggag
aagcctgtggttgtcaatgtcaccgtcagcgatgtgtcgtgggacagcttcctgctgtcc
tgggccactgaggacagaaggttggagggctttctgatcgaggttacagatgcagagacg
ggctctgagtggcaaaaccacacggtgtccgctgatgctcgcagcatcgccatctctggc
ctctcctcgagcacctggtacagggccaatctgtacggggtgtaccggggggccctgtta
gagcccgtctttgcagacaccatcacagaggcagagccagaggtgcaggctctcctcgtg
tccgatgtcggccctgagagctttaagctggcctgggtggctgaagaggacgccttcgac
acctttgtcataatggtgagccaggtcgagccaggccaacccagagagctggtgctgggg
ggcgatgagcggagcacaaacatcacagatctcacagaggacaccgattacgaaatccaa
atctttgggctctttttgggaagaccctccaagtctgtaatggaggaggtgataacagac
ctgggctcacccaagggtatccgcttctctgatgtcactgacacgtccgccacggttcac
tgggtggtccccagggctcgggtggacagctacaaggtcacgtatgtgccggctcatgga
ggtaatgctaagacgctgaccgtggaaggctctgaggctcacactgtgctgtccaacctg
acgcccggggtcacctacgaggtcactgtggtctctgtcaagggtcaaagggagagtgag
cctggatcggacagcgtcaccacagctctggataagccccggggtctgactgcagtcaac
atcacagactctgaggctctgcttctctggcagcctgccatcgctactgtggacggctac
gtcatcacctacagcgcagactcagtggctccagtgatggagcgtgtgtcaggaaacgtg
gtggagtttgatatgtcctccctgaccccggccactcactacactgtgaaggtgtacgct
gtgagggacctgtccaagagcgcagccaccaccacagagttcaccactgatgtggacgcc
cctcaggacctggctggcagtaacatccagacggagagcggcctgctgagctggaagccg
ccgcgcgccgacatcaccggatacatcctgagctttgagtctgcggacggcaccatccgg
gaggtcgtcttgagtcccaatgcggtgtcctataacatggctcagctcagcgcctccaca
cagtactccgtcaagctgcaggccatcgctgggccgaagagaagccgagtcatcaccact
accttcaccaccactggcgtgctgtacagatacccccgggactgctcccaggccctgctg
aatggtgacacctcctcagacctgtacaccatctacctgggtggagatgagagccagccc
gtgcaggtgtactgcgacatggcgactgatggaggcggatggatcgttttcctccgcaga
cagagtggtagactggagtttttccgcaactggaagaattacacagcaggcttcggagac
atgaatgatgaattctggctgggcctgtctaacctgcataagatcacagttgggggtccg
tacgagctgcgagtggacctgagagataagggagagacggccttcgctcagtacgacaag
ttctccatctctgaaccccggagccgctacaaggtccacgtaggagggtacagcggaaca
gcaggggactctatgacctaccaccacggccggccattctccacctacgaccatgacaac
gacatcgctgtcaccaactgtgccctgtcctataagggagccttctggtataagaactgc
caccgtgtcaacctcatgggacgatatggagacaacagtcacagcaagggggtgaactgg
ttccactggaagggccacgagcactcgatcgagttcgccgagatgaagatcaggccctcc
aacttcaggaacctggagggaaggaggaaacgatcatag
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integrated database retrieval system
