Trematomus bernacchii (emerald rockcod): 117472824 Help Entry 117472824         CDS       T09643                                  Symbol ptch1 Name (RefSeq) protein patched homolog 1   KO K06225   patched 1 Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04340   Hedgehog signaling pathway Brite KEGG Orthology (KO) [BR:tben00001]  09130 Environmental Information Processing   09132 Signal transduction    04340 Hedgehog signaling pathway     117472824 (ptch1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Sterol-sensing Patched Motif Other DBs NCBI-GeneID:  117472824 NCBI-ProteinID:  XP_033974134 LinkDB All DBs Position Unknown AA seq 1563 aa AA seqDB search MASAANAPSEQENRDPDRPRIRRRNRGDYTRNTPLDLEYLQRPSYCDASFALEQITQGKA TGRKAPLWLRAKFQRLLFRLGCYIQKNCGKFLVVGLMIFGAFAVGLRAANLETDVEKLWV EVGGRVNRELTYTRQNIGEEAMFNPQLMIQTPREDGANVLTVDALLQHLESALQASRVHV YLYNRQWKLENLCYKSGELVTESHLDQIIEKLHPCLIITPLDCFWEGAKLQSGMVYLPGK DPLQWTNFDPKEFLEDLRKANFPVDGFEEMLEKADVGHGYMDRPCLNPADPDCPLTAPNK NSTKPFDVARALSGGCHGLSRKYMHWQEELIVGGTTKNGSGPLLSAQALQTMFQLMTPKQ MFEHFRGYEEVSHINWNEEKAAAILEAWQRKYSEAVLQSVAANSSQKVLSFTSTTLEDIL KSFSDISVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSLL GISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALT SISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDIF CCFYSPSANRVIQIEPHAHLDGADESHYSPPPSYCTPPPSYHTPPPNYSSPPPSYSSHGF AQQTQITMQSTVQLRTEYDPRTQAFYTTAEPSSQISVQPMNAAPTRSNPNNDYYSSNPSG SSSSSTHGNLNNNNSGSRGNGGSRGSAPFSHHHTAPPSAATTPTASSAPQGDAPSSSGQG PENNSSTRDLLSQHGERSLGLRCLDPPCSRWTLASFAERHYAPFLLQPTTKVVVIVLFLC LLVVSLYGTTQVKDGLELTDIVPRETSEYDFIGAQFKFFSFYNMYVVTQQAEYPKKQHLL HQLHQRFHTVRYVLKEDNGELPHMWLHYFREWLQGLQQAFDRDWEAGRITQNNYRNGSDD GVLAYKLLVQTGRREKPINFNLLTRHRLVDADGIINPGAFYIYLTAWVSNDPVAYAASQA NIRPHPPEWLRDRTDIMPETRLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICS NFSRQGLPSYPNGYPFLFWEQYVSLRHWLLLCISVVLACTFLVCALFLLNPWTAGIIVLV LSLMTVELFGFMGLMGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRHKRAVLAL EHMFAPVLDGAFSTLLGVLLLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFG PYPEVTPIDGRSQLPTPSPETPPHVVHFSVRPHNTTIATPTSGAASDSSDSEYSSNTTVS GISQELQNYNLPSHRGHTRAEEQQYHLQISRGRAARTEEHRRAGSGNRRTARQPDPPGYN VSLSSQGCNSGPQPAAPQRNSSRDPKSQPHRQAPPPARPRMDAFETATEAGGHHGSRGHR EHSAGHRARSSHNPQPNHHLPHHHPNPTPYCQPITTVTASASVTVAVHPAPLSNQGPPAS SYPGYTTTDSYCQSGDQGTEPVFQDPHVPLDTHTGARGAYMESMELQDLEFEAAESNNGR RTS NT seq 4692 nt NT seq  +upstreamnt  +downstreamnt atggcctcggctgctaatgcgccctccgagcaggaaaacagagaccccgatcggcccagg ataaggcggaggaacaggggggactatacccgcaacacaccgctggatttggagtatttg cagcggccaagttactgcgatgcgagcttcgctttggagcaaataacccaggggaaggcg actgggaggaaagcacctctatggctgagagcgaagttccagagacttttattcaggctg ggctgttacatacaaaagaactgcggaaagtttttggttgtgggcctcatgatttttgga gcttttgctgtgggcttaagggcagctaatttggagacggacgtggagaaactttgggtt gaagttggtgggcgtgtgaaccgggaactgacgtacacgcgacagaatataggcgaggag gccatgtttaaccctcagctgatgatccagacgccgcgggaggacggagcaaatgtttta acggtggacgcgctcctacagcacctggagtcagctctccaagccagcagagttcatgtt tacctttataacagacaatggaaattagaaaacttgtgctacaaatcaggagaactagtc acagaaagtcatttggaccagatcatagaaaagctacacccctgcctcatcatcacccct ttggactgtttctgggagggagccaagctccagtctggaatggtctatctaccaggtaaa gaccctcttcagtggaccaactttgacccaaaggagttccttgaggatttgcgaaaggct aatttcccagtggatggttttgaggagatgttggaaaaggcagatgttggacacggctac atggataggccctgtttaaaccctgctgaccccgactgccccctcactgcgcccaataag aactcaaccaagccattcgatgtggcgagggctctgagtggaggctgccatggtctatcc aggaagtacatgcactggcaggaggagctgatcgtaggagggaccaccaagaacggcagc ggacccctgctcagtgcccaagccctacagaccatgttccagctgatgactcccaagcag atgtttgagcactttcgtggctatgaggaggtttcccacatcaactggaatgaagaaaag gctgcagctatactggaagcctggcagaggaaatactctgaggcggtgctgcagagtgtt gcagcaaattcgtctcagaaggtcttgtctttcacctccaccactctggaagatattctc aagtctttctcggacatcagcgtcatccgtgtggccagtggatatctgcttatgctggcc tatgcgtgccttaccatgctacggtgggactgtgccaagtctcagggagctgttgggctg gcgggggtcttgctggtgacactgtcagtggcagctggcctgggcctctgctctctcctg ggcatttccttcaatgctgccaccacacaggtgctacccttcctggctctcggtgttgga gtggacgatgttttcctcctcgctcatgccttcagtgagaccggacagaacaagaggatc ccattcgaggatcgtacaggggagtgtctgaagaggacaggggccagcgtggctctcacc tccatcagcaacgtcaccgctttcttcatggcagcactcatccccatcccagcgctcaga gccttctctctacaggctgcggtggtggtggtgtttaactttgccatggtgctgctcatc ttccccgccatcctcagcatggacctctaccgacgagaagacagacgtttcgacattttc tgctgcttttacagtccctctgccaatcgggtgattcagatcgagcctcatgcacacctg gatggggcagatgaaagccactacagccctcccccatcctattgtacacctcctccctcg tatcacacgcctcccccaaactacagcagcccccctccctcctacagcagccatggcttt gcccagcagacgcaaatcaccatgcagtccacggtgcagctcaggacagagtacgacccc cggacccaggccttctacaccacggctgagccaagttcgcaaatctctgtgcagcccatg aacgcagctccaacgaggagtaaccctaacaacgactattacagcagcaaccccagcggt agcagcagcagcagcacccacggcaatctcaacaacaacaacagtgggagccgaggcaat ggggggtctcgaggttctgcccccttctcccatcatcatactgcacctccttctgctgcc acgactccaactgctagctcagctcctcagggcgatgcaccctcgtcatctggccagggc ccggagaacaacagctccacgcgggacctgttgtcccagcacggagaacgctctctgggc ctgcgctgcctcgaccccccctgctcccgctggaccctggcctcttttgctgagagacac tatgctccattccttctacaaccaaccaccaaggtggttgtgattgtgctgttcctctgc ctgctggtagtcagtctgtacgggaccacccaggtgaaggatggcctggagttgacggac attgtgccgagagagaccagcgagtatgacttcatcggtgcccagttcaagttcttctcc ttctacaatatgtatgtggtgacacagcaggcggaataccccaagaagcagcatctgctg caccagctccaccagaggttccacactgttcgctacgtgctgaaggaggacaacggagag ctgcctcacatgtggcttcactatttcagggaatggcttcaaggtctccagcaggcgttt gacagggactgggaggccgggcgcatcacccaaaacaactacaggaatggctctgatgat ggcgtcctggcatacaagctgttggtgcagacaggacgcagggaaaagcccattaacttc aacctgctgactcgtcacaggcttgtggatgcagatgggatcatcaaccccggggcattc tacatctaccttactgcttgggtcagcaatgatcctgtggcatacgccgcctcgcaggcc aacattcgcccacaccctccagagtggctgcgcgaccggaccgacatcatgcccgagaca cgcctcagcatcccagctgctgagcccattgaatacgcacagttccccttctacctcaac gggcttcgggagactccacagtttgtggaggccattgagagcgtgcgggctatctgcagc aacttcagtcgacagggcctaccctcctaccccaacggctaccctttcctgttctgggaa cagtatgttagtctgcgccactggctcctgctgtgcatcagtgtcgtgctcgcctgtacc ttcctcgtctgtgccctcttcctgctcaacccgtggaccgccggcatcatagtgttggtg ctttctcttatgactgtggagctgtttggcttcatggggctgatgggaatcaagctgagt gctgtccctgttgtcattctcatcgcctctgtgggcattggagtggagttcaccgtccat gtggctctggctttcctgacagccataggggatcgtcacaagcgggccgtgctggctctg gagcacatgtttgctccggtgctcgacggagccttttctaccttattaggtgtcctgttg cttgcggggtctgagttcgactttattgtcaggtatttcttcgcagtgttggccattctc acagttcttggagtactgaatggattggtccttcttccagtattactgtcatactttggg ccctatccagaggtgaccccaatcgatggtcgtagtcagttacccaccccatcacctgag acacctcctcacgtggtccacttctcggtccgtcctcacaacaccaccatagccacgccc acctctggtgcagcttcagactcgtcggactcggagtacagctctaacaccacagtgtct ggtataagccaggagctgcagaactacaacctgccctcccacaggggacacactcgagca gaggagcagcagtaccacctccagatcagcaggggcagagcagccaggacagaggagcac aggagagcaggatcagggaacaggcgcacagccaggcagcctgaccctcctggctataat gtgtctttgtcctctcagggttgtaattctgggccccagccagcggctcctcagcgtaac agcagcagggaccccaagagccagccgcaccggcaggccccgcccccagcccgcccgcgc atggacgcttttgaaactgctactgaggctgggggccatcatggctcacgtggccataga gaacactcagcaggccacagggcccgctcttcccacaacccacaacctaatcaccacctc ccgcaccaccacccaaaccccaccccttattgtcaacccatcaccacggtaacagcatca gcctccgtcactgttgctgttcacccagcccccttgtccaaccagggccccccagcttcc tcttacccaggatacacaacaacagacagttactgccaatcaggagatcaggggacggag cctgtcttccaggaccctcatgtgccactggacactcacacaggggccaggggggcctac atggagtccatggagcttcaagatttggagtttgaggcagctgagagcaacaatggcagg cggacaagctga

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