Trematomus bernacchii (emerald rockcod): 117472910
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Entry
117472910 CDS
T09643
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117472910 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117472910 (cnot6l)
Enzymes [BR:
tben01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117472910 (cnot6l)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117472910 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117472910 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_R13L1-DRL21
LRR_LRWD1
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
117472910
NCBI-ProteinID:
XP_033974242
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MPKEKYDPPDPRRCYTIMPAEEVANGKKSYWAELEISGRVRSLSPSLWTLTHLTALHIND
NNLSRIPPDISNLSHLVFLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQESDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQMSP
SAAFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITSCDADIISLQEVETEQ
YYTMFLETLKERGYDGYFCPKSRAKLVSEQERKHVDGCAVFYKTEKFTLLQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDMFSDGVKVPQERQLILVANAHMHWDPEY
SDVKLIQTMMFLSELKSIAERASSSMATGSPASDPSSIPIVLCADLNSLPDSGVVEFLSN
GGVADNHKDFKELRYNECLTNFNCNGKNGNSDGSITHSFQLKSAYDSNLMPFTNYTYDFK
GVIDYIFFSKTHMSVLGLMGPLDSQWLVDNSITGCPHPHIPSDHFSLLAQLELHPPLPHP
LTPLNGLHLPVHR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatccccgcagatgttacaccatcatgccagcg
gaggaggtggccaatgggaagaagtcttactgggccgagctcgagatttctggacgggtg
aggagcctgagcccctcgttatggaccctcacccacctgacggcgctgcacatcaacgac
aacaacctgagccgcatcccacccgacatctctaatctgtcccacctggtgttcctgaac
ctgtcgtccaacaagctccgcagtctgcccgctgagctgggcaacatggtctctctcagg
gaattgcttttgaacaacaatcttttacgagttctgccttatgaactcgggaggcttttc
cagttacaaaccttggggctaaaaggaaaccctttgtcccaagacatcctcaatctgtac
caggagtcggacggaaccaggaagcttttgaactacatgctcgacaatctagcagtgcac
ccagagcagctcccacaaagaccgtggatcactctgaaagagcgggaccagatgagcccc
tcagctgcgttcacggtcatgtgctacaacgttctgtgcgacaagtatgccacccgacag
ctgtacggctactgtccctcctgggccctcaactgggagtaccggaagaaaggcatcatg
gaggaaatcaccagctgcgacgctgacatcatcagcctgcaggaggtggagacagagcag
tactacaccatgttcctggaaacactaaaggagcgcggctacgatggatacttctgccca
aagtctcgtgccaaactggtttctgaacaggagcggaaacacgtggacggctgcgctgtg
ttctataagaccgagaagtttactttgctccagaaacacactgtggagttcaaccaggtg
gccatggccaactctgagggctccgaggtcatgctgaaccgcgtgatgaccaaagacaac
atcggggtggccgtcctgctcgaggtcaacaaggacatgttctccgatggcgtgaaggtg
ccacaggagaggcagctgatcctggtggccaacgcccacatgcactgggaccccgagtac
tcggacgtcaagttgatccaaaccatgatgttcctgtcggagctgaagagcatcgctgaa
agggcttcgagctccatggcgactggctcgcccgcctccgacccgtcctccatccccatc
gtcctgtgtgctgacctcaactcgctgcccgactccggtgtggtggaattcctgagcaac
ggaggagtggccgacaaccacaaggacttcaaggagctacgctacaatgaatgtctgacc
aacttcaactgcaacggcaagaacggcaactcagacggaagcatcacacacagcttccag
ctgaagagcgcctacgacagcaatctgatgcctttcaccaactacacatatgactttaag
ggcgtgatcgactacatcttcttctcaaagacccacatgagtgtcctgggcctgatgggg
cctctggacagccagtggctcgtcgacaacagcatcaccggctgcccccacccccacatc
ccctcagaccacttctccctgctggcccagctggagctgcacccacccctgccccacccg
ctcacccccctcaacgggctgcacctgccggtccacaggtag
DBGET
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