Trematomus bernacchii (emerald rockcod): 117473014
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Entry
117473014 CDS
T09643
Symbol
chd7
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 7
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117473014 (chd7)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117473014 (chd7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
BRK
Chromo
ResIII
DEAD
HDA2-3
Chromo_MIT1
HTH_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
117473014
NCBI-ProteinID:
XP_033974376
LinkDB
All DBs
Position
Unknown
AA seq
3268 aa
AA seq
DB search
MADPGMLSLFGDDAGLFSDGLDGLGDCFPQQPAPAQSNPLAQQNNPSLNHEHQGNRGYHQ
GMIHSGGPGPGQPKLGQMYDHGPYTGYDQPGAAAAGRMMSPNGPSQGPPNVNTAMNGLAS
HYHNNPANSGSSHHGYPGDAAGGSGAAVWGQQQQQPPTSRSAYQQPPAQPGAGPNQLGGY
QMSQGNYGGMQGPPTPNAARMNQHYPSQGMANPPQSMAQPTAQDPAHYLGHVGMGGAQMR
HPQPQSQPQGYPNMGHTSRFPHSPSRQPSHQHQPGMAGFGGGQYPGYQAQYGAMGPGMGQ
GANVNANTSQAMGPGQLGQRFTQGSVPAAGQPGQRYPPAPAHQPQPHQALSAQMQQPGQQ
GQPMHPQNLPQAQNQPHLAPPAQGSYSSPSSMSPMRVLGTPTPPPQQGRPPSAGLAAPPE
TSGYTALQPTPNALTQRTPQIPLSTPHPQHQQPHNMPPNAGQMYPGMGPQRGPQIGPNMP
QLQQGPHEAPVSQGGDQRLLQTPQQPPRSGQPLQAPSMGPHGVPALNQGLAPPTQNAQTQ
PTHMPHHLQSTPPATNTASHPWVPPASHPLSSPPHTPQKVPHVQHSPTDPSLVPEMPTVG
GGPPGQPISTEQPSDQETKPKKKRKKKAKVVDGQEEEGGKKKKAATGEAGGEEDVQSELP
GAGSDAGEQVTGTGKVEGSSPLVEEKKKRKKKPKEKAEGKEDKEPKTPKTPKTPKTPKEP
KEPKEPREKKTKISTPKTKTPKKTSSKKAESEGGASAAKKESKRKREPSVSDEVEVKSPP
PSAPEDDDDDGVQKRRSSRQVKRKRYTEDLEFKITDDDSGDDSTTPKSPSSSQQQDVAEV
EGPVVEKIMVKRITKKQLESGEEVEVEEFYVKFKGFSYLHCRWADLEELEKDKRIHQKVK
RFRAKQLLLNSFITEMDDEPFNPDYVEVDRVLDVSESPDENEETVTLYLVKWCSLPYEDS
TWELKADIDQSKIDDYELIAARTPNTKRVERPPAAEWKKLEGAMDYRNSNELREYQLEGL
NWLTFNWYNSRNCILADEMGLGKTIQSITFLFEIFKMGIQGPFLVIAPLSTIPNWEREFR
TWTELNAVVYHGSQASRKTIQAYEMYHRDSQGKVIKGAYRFHAVITTFEMILTDCPELRN
VNWRCVVIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNFLEPERF
PSELTFMSEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNMQKK
YYRAILEKNFTFLSKGGAGGGAGVPNLLNTMMELRKCCNHPYLITGAEEKIAEEFRESHG
GRADMPDMALQAMVQAAGKLVLIDKLLPKLKAGGHRVLVFSQMVRCLDILEDYLIQKRYP
YERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN
DLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENSNSGQ
LSKKEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIESEGKGSTFAKASF
VAAGNRTDISLEDPDFWQKWAKKAELDMDAMNGRNTLVIDTPRVRKQTRHFSSAKEDEML
EFSELESEDDEPSRPSSKPRRPQDKAQGYPRSECFRVEKNLLVYGWGRWNDILAHGRFKR
PLKESDVEKICRALLAYCLLHYRGDENIKSFIWDLINPSEDGTTKLLTNHSGLSTPVPRG
RKGKKGKPAAPTPQTPRADWLASCNPDHILQEDSYKRHLKHHCNKVLLRVRMLYYLRQEV
IGDQAERILEGADSSELDIWIPQPFHAEVPADWWDSEADRSLLLGVFKHGYEKYNSMRAD
AALCFLERVGMPDAKAIAAEQRSSDMMTDGVDGEDEDPEYKPLRMPFKDDMDDFTNSPLD
DTVEGDAEAKSGENGQSGSALGGASGSNERLYWPAASALTARLRRLITAYQRSNRREQLR
QEAVNRPDGRRRRRRDFLPAIGMVTDTGGGGAAYIQDGAGVFMTEGSPYMAKGSAYFAKG
GQFMAEASPVMTASSLMPDGAMYYKERRQRWTRREEADFYRVVSTFGVVFDTQRQKFDWA
QFRAFARLDKKTDESLEKYYYSFIAMCKRVCRMQNKSEAQLPDPTLIIDPITEERASRTL
YRIELLRRIREQVLPHPLLSERLKLCQSSPDLPEWWESGRHDHDLILGASKHGVSRTDYH
ILNDPTLAFLDAHQRSTSQRGGVKGETTKAGMGAPDTTGPLLTSEELASAAAAATIAMNA
AKEEEEEEEEEEGKEVKTEVKMETEQGDANNIPCRKSETPEEQKENEAEVREGKEDIAAS
PKEEEKSQPKVEEEEQEELKEEPSAEGEESSKLAEDEEEEVPEEKKSLTPADSPTAELTE
HPPPSPKAQPEHKPAEKEETEVNPESPKSPKSADTEKSPEDEEEERMDEDDKSEKSSQAE
ASAASEQKNFDEESIASLSTSAQNETRDGFCPDDLPETTALHALQERAYAFSFWPKDRLM
INRMDNICETVLKGKWPVNRRHIFDFPGNLLPGQSSALPTAAAATVTESPLQRRSLAELT
MAGIHTPYSGSEDKTLSPQFHEDALTLPRQRRRRRRKIEIEAERATKRRNLMEMVAQLRE
SHSATDTQSQAIDLTKGMHHHHKAAPSLAGFPSALATSPSLKAQMELLLQAPPSAHRANG
SLEADLPIMRRRRGRRKNVEGLELLFMGNKRAGGDDGDGTKASGVEGLQDAARAHRPLPV
PEQSPSARSLASGSMEEEEAAVSNKELGEWLRQHPTYTMDMAAFTPKSEDVLLSQFSKPK
QKRHRCRNPNKIDINTLTGEERVPVVNRRNGRKMGGAMAPPMKELPRWLLENTEYSIAPD
WTDIVKQSGFLPEAMFDRLLTGPVVREEGVRRRGRRPKSEIAKAAAAAQAAAAAQAAQVS
LLSAASSAGGINPLLLSSLFGGMDLSSLQSLQSLQLAAGLMGFPHPSDPKQAAASAAASM
LPLMLPGMGGLPNMAALPNMFSLGGLFGGNLATVAAVAAASSPRAATSQNSNGTMQGEGG
DGEGEDYDEEEAVEEVEANSERAAKKARKRRRREQAGSDVTAQTLAADSSVASINGDAAA
LLAAAGMSASSLAFNPFLLSTMAPGLLYPSMFLPPGLGGLSLPGFPSASTLAELQSAMAG
ALGGNALTTTLPSNQERKGGLKAAAEEEEEEEGEDSDLAEEKDGAEEELRGEDSALEDVG
MGEEEEEEEEEEEVGEAAGASPLKDNSD
NT seq
9807 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccggggatgttgagtttgtttggggacgatgcagggttgttctctgatgga
ttagacggtttaggagactgctttcctcagcagccggcccctgcgcaatccaacccttta
gcccagcaaaataatccctctctgaaccatgagcaccagggaaacaggggctaccaccaa
gggatgatccacagtggcgggcccggaccagggcagcctaaactgggacaaatgtatgac
catggcccctacacgggctacgatcaacctggtgccgccgccgcaggacgaatgatgtcc
ccgaacggtccaagccaggggccacctaacgtgaacacggcaatgaatggcttggcttcc
cactaccataataacccagctaactctggcagcagccaccatgggtacccgggtgatgct
gcaggagggagtggggctgctgtctggggccagcagcagcagcagccgccaacgagcaga
tcagcctatcagcagcctcctgcacaacctggggctggccccaatcagctggggggctac
cagatgtctcaaggcaactatggtgggatgcaaggcccccccacaccaaatgcagctcgc
atgaaccaacactacccttcacagggcatggcaaatcccccacagagcatggcacaaccc
accgctcaggacccagcacactacctgggacatgttggaatggggggggcccagatgcgt
catccccagccccagtcacaaccccagggctatcccaacatgggccacacatcccggttc
ccacactccccctcccgacagccttcacaccagcaccagccaggtatggcagggtttggg
ggcggccagtaccccggctatcaggcacagtacggagccatgggacccgggatgggtcag
ggtgctaatgtcaatgctaacaccagccaggccatgggaccagggcagctcggtcagagg
tttacccagggatcagtcccagcagctggccaaccagggcagcgatacccccccgcacca
gcacaccaaccccagccccatcaggccctctctgcccagatgcagcagccagggcagcag
gggcagcctatgcacccccagaatcttccccaggcccaaaaccagccccaccttgccccc
ccagctcagggatcttactcctccccttcatccatgtcccccatgagggttttggggacc
ccgacaccacctccccaacaaggcaggccccctagcgcaggactagccgcacccccagag
acttcaggctacacagccctgcagcctacacccaacgctttgacccagaggactccccaa
atccctctgtctactccacacccccaacaccagcagccccacaacatgccccccaatgct
gggcaaatgtatcctggcatggggccgcagcgtggtcctcaaatagggccaaatatgcct
cagctccagcaagggccacatgaagctccagtcagccaggggggggaccagcgtttgctc
cagaccccgcagcagccccctcgcagcgggcagcccctgcaggccccttccatgggcccg
catggagttccggccctaaaccagggcttggcaccacccacccagaacgctcagacccag
cccacacacatgccacaccacctgcagagcacacctcctgcaaccaacacggcctcccac
ccatgggtgcctcccgcctcccacccgctctcatcaccccctcacaccccacagaaagtg
cctcacgtacagcattcccccaccgacccctcactggttcctgaaatgccgacagtcggt
ggcggcccccccggccagcctatcagcacagagcagcccagcgaccaggagaccaagcca
aaaaagaaaaggaagaagaaagctaaagtagtggatggacaggaggaagagggagggaag
aagaagaaggcagcgacgggagaagccggaggagaggaggacgtacagtcggaactcccc
ggagcaggaagtgatgcgggtgaacaggttactggcacaggaaaggtagagggaagttca
ccactggtggaggagaagaagaaacgcaaaaagaaaccaaaggagaaggcagagggaaaa
gaggacaaagagcccaagaccccgaagacgcccaaaacacccaagacccccaaagagccc
aaggagcctaaggagcccagggagaagaaaaccaagatctccacgcccaagacaaagacc
cccaagaaaaccagcagtaagaaggctgagtctgagggtggggctagcgctgctaagaag
gaatccaagaggaagagagagccgtcagtcagcgatgaggtggaggtgaagtctccgccc
ccctcagctcctgaagatgacgacgatgacggcgtacagaagcgccgttccagccgtcag
gtgaagaggaagaggtacacggaggatctggagttcaagatcacagacgatgacagcggc
gacgactcgacaacacccaagtctccatcgtcgtcacagcaacaggatgtggccgaggtt
gaagggcccgttgtggaaaagatcatggtcaaacgcatcaccaagaaacagctggagtcg
ggggaggaagtggaggtggaggaattctacgtcaagttcaagggcttttcatacctccac
tgccgctgggcagacctggaggagctggagaaggacaagaggatacaccaaaaggtcaag
aggttcagggccaagcagctgctcctcaacagcttcataacagagatggacgacgagcct
tttaaccccgactacgtggaggtggaccgtgtcctggacgtttcagagagcccagatgaa
aacgaagagacggtgaccttatatctggttaaatggtgcagcctgccttacgaagactcc
acctgggagctgaaggccgacatcgaccagtccaagatagacgactacgaactcatcgca
gcacgcacacccaacactaagagagtggaacggccccctgcagccgaatggaagaagctg
gagggggccatggattacaggaacagcaacgaactcagggagtaccagctggaaggcctc
aactggctcaccttcaactggtacaactcacgtaactgtatcttggctgacgagatgggt
ctaggaaagaccatccagtctattacattcctctttgagattttcaagatgggcatccag
gggccgttcttggtcatcgccccgctctccaccatccccaactgggagagagagttccgc
acctggacggagctgaacgctgtggtgtaccacggcagccaggccagccgcaagaccatc
caggcctacgagatgtaccaccgagactcacagggtaaagtaataaagggagcgtaccgg
ttccacgctgtgataacgaccttcgagatgattctgactgactgtccggagctgcgcaac
gtgaattggcgctgtgtggtgatagacgaagcccaccgcctcaaaaaccgaaactgcaag
ctactggaaggacttaaaatgatggacatggagcacaaagtcctgctgacagggactcct
ctccagaacacggtggaggagctcttcagcttactcaacttcctggagcccgagcgcttc
ccctctgaactgacattcatgagtgaatttggagacctaaagactgaagagcaggtccag
aaactgcaggccattctgaagcccatgatgctgagaagactgaaggaggatgtggagaag
aacctggcccccaaggaggagaccatcatagaggtggagctgaccaacatgcagaagaaa
tactatcgggccattctggagaagaatttcactttcctgtccaaaggaggagcaggtgga
ggagcaggagtccccaacctcctcaacaccatgatggagctgaggaaatgctgcaaccac
ccatacctcattactggagcggaggagaagattgcggaggagttcagggaatcccacggt
ggccgggcagacatgcctgacatggccctccaagccatggtgcaggctgctggcaagctg
gtgctcatcgacaagctgctccccaaactgaaggcggggggccacagagtgctggtgttc
agtcagatggtgcgctgcctggacattctggaggactacctcatccagaaacgatatcct
tatgagcgtatagacggcagagtgcgtggtaacctacgtcaggctgccatcgaccgcttc
tccaaacctgactcggaccgcttcgtgttccttctgtgcacgagggccgggggcctaggc
atcaacctgacggcagccgacacctgcatcatcttcgactctgactggaaccctcagaac
gacctgcaggcccaggccaggtgtcatcgtattggccagtccaaggcggtgaagatctac
cggctgatcaccaggaacagctacgagagggagatgttcgacaaggccagtctgaagcta
gggctcgataaggccgttttgcagagcatgagcggacgagagaacagcaacagcgggcag
ttgtccaagaaggaggttgaggacctgctgaggaagggagcgtacggagctttgatggac
gaggaagacgagggatcaaagttctgtgaggaagacatcgaccagatcctccagagacga
acacacaccatcaccatcgagtccgagggcaagggctctacctttgctaaggccagtttt
gttgcagctggtaaccgaacagacatttctctggaggacccagacttctggcagaaatgg
gccaagaaggctgagctggacatggatgccatgaatggacggaacacgctggtgatcgac
acaccgagggtgaggaagcagacccggcacttcagcagcgccaaagaggacgaaatgctc
gagttctcggagctggagagtgaagacgacgaaccgagccgaccctcgtccaaaccgcga
cggccccaagacaaagcccaggggtacccccgatctgagtgcttccgagtggagaagaac
ctgctggtctacgggtggggtaggtggaatgacatcctggctcacggtcgcttcaaacgg
cccctgaaggagtcggatgtggagaagatctgcagagcgctgctggcctactgcctgctg
cattaccgtggagacgagaacatcaagagcttcatctgggacctgatcaaccccagtgag
gacgggaccaccaagctgctgaccaaccactccggtctctctactccagtccctcggggc
aggaagggcaagaaggggaagcccgcggctccgactccgcagacgccaagagctgattgg
ctggccagctgcaaccctgaccacatcttgcaggaggacagctacaagagacatctgaaa
caccactgtaacaaggtgctgctgagggtgaggatgctgtactatctgcgtcaggaagtc
atcggcgatcaggccgaacgcattctggaaggcgctgactccagtgagctggatatctgg
attccgcagccgttccacgccgaggtcccggctgactggtgggacagcgaggccgacaga
tccctgctgctcggtgtcttcaaacacggctatgagaagtacaactcgatgcgagcggac
gccgccctgtgtttcttggagagggtgggcatgccggatgccaaggccatcgcagcggag
cagaggagctctgacatgatgacagatggtgtggatggtgaggatgaggatcctgagtac
aagcccctgcgtatgccttttaaagatgacatggatgacttcaccaactctcccctggat
gacactgtggaaggggacgctgaagctaaatcaggtgagaatggtcaaagtggatctgct
ctgggcggagcttcgggctccaacgagcgactctattggccggccgcctcggctctgact
gcccgtctgcgccgcctcatcacggcctaccagcgctccaaccgcagggagcagctccgc
caggaggctgtcaaccggcccgacgggcgcaggcggcggcgcagggacttcctgcctgcc
atcggcatggttaccgacacaggaggagggggggcagcctatatccaagatggagcaggg
gtgttcatgacggaaggaagcccgtatatggctaaaggaagtgcctactttgccaaaggt
gggcagttcatggcagaggcgtcaccggtgatgactgccagctccctgatgcctgatgga
gccatgtactacaaggagaggagacaaagatggactcgtcgtgaggaggcagatttctac
cgtgtggtgtccaccttcggggtcgtctttgacactcagcgtcagaaatttgactgggct
cagttcagggcctttgctcgactggacaagaaaacagatgagagcttggagaaatattac
tactcgttcattgccatgtgtaagcgggtctgcagaatgcagaacaagagtgaagcgcaa
ctcccagaccccaccctgatcatcgacccgatcacagaggagcgcgcctcccgcaccctg
taccgcatcgagctgctgcggcgcatccgggaacaggtcctcccccacccgctgctctct
gagcgcctcaagctctgccagtcctcccctgacctcccggagtggtgggagagcggccgc
catgaccacgacctcatcctgggggcctctaagcacggagtcagtcgcacagattatcac
attctaaacgaccccaccttggccttcctggatgctcaccagcgttccaccagccagaga
gggggagtcaagggagagaccaccaaagcggggatgggagcaccggacactaccggacct
ctcctcacctctgaagagctggccagcgccgcagcagctgcgacgattgctatgaatgca
gctaaagaagaggaggaggaggaggaagaagaagaagggaaggaggtgaagacagaggtc
aaaatggaaacggagcaaggagacgctaacaacattccatgtaggaagagtgaaactcct
gaggagcagaaggaaaatgaggcagaggtcagagaagggaaagaggacattgctgcgtcg
cccaaagaggaggagaagtcccagcccaaagtagaagaagaggagcaggaagagctgaaa
gaggagcccagtgcagagggagaggagagttccaaactagcagaggacgaagaagaggag
gtaccagaagagaagaagagtctgactcctgctgactctcccaccgctgagctcacagaa
cacccccccccctctcctaaagcacaacccgagcacaaacctgcagagaaagaggagact
gaggtgaacccagagtctcctaaatctccaaagtcagctgacacagagaaaagcccagag
gacgaggaggaagagaggatggatgaagatgacaaatcagagaaatcctctcaggctgaa
gcgagcgctgcatcagagcagaagaactttgatgaggagagcattgcctctctgagcacg
tctgcccagaacgaaaccagagatggcttctgccccgacgacctgccggagaccacagca
ctgcacgccttacaggagcgagcctacgccttctcattctggcccaaggaccgactgatg
atcaacaggatggataacatctgtgagactgtcctgaagggcaagtggcctgtcaacaga
cgccacatcttcgacttccccggcaacctgttgccagggcagagctccgccctcccaaca
gcggccgccgccacagtgaccgagagcccgctgcagaggcggagcctcgccgagctcacc
atggccggcatccacacaccgtacagcgggagcgaggacaaaacactgtcgccacagttt
catgaggacgctctgaccctgcctcgccagaggaggaggaggaggaggaagatcgagatc
gaggcggagcgagccactaagagacgtaacctgatggagatggtggctcagctgagagag
agccactctgccacggacacccagagccaggccatagacctcaccaagggtatgcaccat
catcataaggctgctccctcattggccggctttcccagcgccctggcgacaagcccctcc
ctcaaagcccagatggagttgctgctgcaagccccgccctctgcgcacagagccaatggt
tcactggaggctgacctgccaatcatgaggaggaggcggggccgcaggaaaaatgttgaa
ggcctggagctgctgttcatgggcaacaagagagcaggaggggatgatggtgatgggacg
aaggcttcaggtgtggaggggcttcaggatgctgcccgtgcccacagacccctccccgtc
ccagagcagagccccagtgccaggtctctggcctctggcagtatggaggaggaggaggct
gccgtctccaacaaagagctgggggagtggctgaggcagcaccccacctacaccatggac
atggctgctttcacaccaaagagcgaggatgtactgctgtctcagttttctaagcccaag
cagaaacgccatcgctgtcgaaacccaaacaagatcgacatcaacaccctgactggagag
gagagggtgcctgtggtgaacagacgcaacggacgcaagatgggcggggccatggctcca
ccaatgaaggagcttccccgatggttactggagaacacagagtattccatcgcccctgat
tggacagacatcgtgaaacagtcgggtttcctcccagaagccatgtttgaccgtctcctg
accggccctgtggtcagagaggagggcgtccgccgcagaggaagaagacccaaatctgag
atcgccaaggcagctgcagccgctcaggctgcggctgcagctcaggctgcacaggtctct
ctgctgtctgctgcttcatctgcaggaggcatcaaccctctgctgctgagcagtctgttt
gggggcatggacctgtcctccctgcagagcctgcagtctcttcagctggctgccgggctg
atgggcttcccccacccctcggaccccaagcaggcggctgccagcgccgccgcctccatg
ctgcccctcatgctgcccgggatggggggcctgcccaacatggccgccctccctaacatg
ttcagcctgggcgggctgtttggcgggaacctggccacggtggcagctgtcgccgctgca
tccagcccccgcgctgcgacgtcccagaacagcaacggaaccatgcagggtgaggggggg
gacggagagggggaagactatgacgaggaggaggcagtggaggaggtggaggctaatagt
gagagagccgcgaagaaggcgaggaagaggaggaggcgggagcaggcaggaagtgatgtc
actgctcagaccctcgctgctgactcgtcagtggcctccatcaatggggacgccgccgcc
ttgctggctgcagcgggcatgtcggccagctctctggccttcaaccccttcctgctgtcc
accatggcccccggcctgctctacccctccatgttcctgcctccaggcctgggggggctc
agcctaccgggcttcccctccgcctccaccctggccgagctgcagagcgccatggccgga
gctctggggggcaacgccctgaccacaaccctccccagtaaccaggagaggaaggggggg
cttaaagctgctgcagaggaggaggaggaggaggagggggaagacagtgacttggctgag
gagaaagacggagcggaggaggagctgagaggagaagattcagcgctggaggatgtaggg
atgggggaggaggaggaggaggaagaggaggaggaggaggtgggggaggcggcaggagcg
tctccactgaaggacaacagtgactga
DBGET
integrated database retrieval system
