Trematomus bernacchii (emerald rockcod): 117473185
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Entry
117473185 CDS
T09643
Symbol
cspg4b
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tben00535
]
117473185 (cspg4b)
04091 Lectins [BR:
tben04091
]
117473185 (cspg4b)
Proteoglycans [BR:
tben00535
]
Cell surface proteoglycans
Others
117473185 (cspg4b)
Lectins [BR:
tben04091
]
C-Type lectins
Others
117473185 (cspg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Laminin_G_3
TMEM154
DUF3377
7tm_3
Motif
Other DBs
NCBI-GeneID:
117473185
NCBI-ProteinID:
XP_033974589
LinkDB
All DBs
Position
Unknown
AA seq
2418 aa
AA seq
DB search
MSGNSRVSTGRRKMDSVVKNTQKKLWLRGLLWWSLLLELASGASFYGDGFVQLKATESSD
HNTLRIRFRTSSTNGLLFLAAGQNDYFLLELHAGRLQLKLDLGSGELQLQSEKGTQLNDL
AWHSVEVRHVQNNVTLTVDKNSQTGLKIPASNHNLDISDGLFVGGSGGLDKMYLPRDQIG
FRGCMDEVVFNKHDLLSSLRPYTGFKNVHEVSLGCSPQFFATEEDPISFFSSRAYISLPT
WNTQQEAVFECVVHTSAKEGIILYSSAREGDFLAVEIQEGLPVAIVGKGGTKTELRSLTS
IYDRKWHTLKLHFRSESLELTVDGEMVRSSISSQSKRLQLKGSLFVGGIDDGTRSEARKV
GLVSVSGKRVRGGSFKGCLKNIEVNRVKTGLSNAVVTKDISVGCEPETEHEPSTTVSPTS
AAGSLFHLVTPRPSLQTSTLAKGLDRKYGSNFVQFKNLVVPEGGRASLEAKHIKVLLDFK
KLGIRQSQIVFQIREQPIRGQIRLDVDQDQEENTFSMLDLWHGRVMYIHGGSEEPDDFFM
FSIYSSSRKQVPDYLKGNKLYRYNVTMTPTNDAPELSLPEGNLFVLLENSKKRLTTDVLR
ATDIDSNYTNLVFSVLGNLNADAGYLEIENNPGKSVPSFSYLDLEEEKVFYVHTGVRNSR
IVLRVSDGEKVSNTVVLRVMAVALEYKIANNTGLEIIQGESAILGLKQLAVQTNAIKQIV
DIRYDIIEPPQYGELQRLHSSGEWRHTDSFSQRLLEKGRLRYVSTFQEVQTSNVTDYFKS
KVHVAARANTEILFPITVKWVKYHLVRNVIMDMDKVRKVTLDSDNLFATAEGVVLSEDDL
YFRVLTTPKKGKLLLDTTILTKNSTFSQRDVTDQKVHYELVDRPYEDTSDRFKFQLVSKH
AESQNYDFRFTIKADVNSVFMRNDGLSLIEGESKLITKDALFAETLSTKDMFYTVISSPK
HGKLSRITRSNSNASYDNILTFSNQDILEERIMYIHDDSESTQDNFTFIASTSQEFKSSI
TEDEFGSKEGLFNISIQLVNDQKPVRVIDKVFLVVKNGQKLLTIDDLRYHDTDSDFDDGQ
LIYTRRGIPMGDLVLVNDTSHRLFQFRQKDLEDKRVLFIHKGVNMGRFVLFVSDGKHFVS
SLLDISAQDAFLKVGNNTGLMVQKGQSVTFSTSNFSIVSNLDIRDDQEVVFKLDEAPKYG
GLYRNETEVELFSLSDFKNGIMSYRHNDSKHVPEYFNLTVKAKGLELAVRINVKVYLESH
QRPPIVLHHNILLVEEGKPVKISEAKLEVTHEDNLPSEIVFTVKLAPSHGFIRRFTDAEE
RYIGTKQSPVRTFTQEDINSGNIQYMQAEPNKTNDTFILDATNGVTDVNGIRMSIDIIPR
LIPVEVFNFTLNEGASKALTEDVLKVTNRHFSGNNFLYSLTEPPQHGHIEHSRHTGVAIT
SFTRRQVEQEFIYYVHDSSETLADNFTVMANDPGLRKQSAAQTVHIQVSAVNDEPPVITA
NRVLRVWVSSVTEIRPEDLRAQDRDSPPEELHFMVIPPSNGHLALKSAPMKALLNFTQAH
IDQGQLLFVHKGAMSGGFNFQVNDGVNFTPRQIFSITARSLVLSLENNRPIKVFPGSSTP
ITNEDLQAVTNDISNTSTRIITFSLIRQPKLGRLVTRQPDNSTVDISTFTQDMVDRKEVV
FIQTPIESVGWEAMDSMTFSVASSPTTLDSQTFKIDISYENTGPEHNTVLLANKGAEVTE
GESVIIDESKLDASNLMSKLPTPQRSSHEVWFQVTSLPEHGVIVVGERNLTKEKPNFSQF
IVNKYGITYKHDNSETTHDSFVFSTWLNPKGKTAQRPQDDIDIVEEYFNLTITPVNDQPP
LLKTKAPSLKVVQGDTVALRPENLKVEDLDNPPGDIKFSVISKPNNGYLALGGHLNESVE
TFTQAQINNGSVYFIHDGSSVSGVFYFSVTDGHHKPIYKLFNLEVTEITISLVNYTGLTL
EQGKTSVSLTQHNLAAETNGRNFTIHYQITKPPHFGKLLKDNQEVTTFEQEDLQAGRLSY
HMISLSSAEDSFVFTAFTSEANVTNQVFNITVRPLIQVGKGFSIPNGIAVKLNAGFLNAS
ELANISNSDPTFEIISHPKYGKVVWTKPKMSKKAVPAESFTFQEVMQEMLALQLNANMTG
VQELNDSLVFVLKADNVQPAKGEFHFTVVPYDAALFPTTKSPVPTTSSVPRTPIHTSRNG
TASPVLLTAFLSTQQTSKNQQKVKARNRWGNSNRTSIFSTTLGKPTQGTEDFPFRNTPVR
VESYPQKTSSPLLVILPLLALLLLIIIFVVLVVFLRHHRHRRTSSSKETASTDVPSSQSY
RGQPQRSPTVPTVTVTPLNPSCPNSPLFDRLLTTNQGSAYNTVDSNILLSSWKNGSPASS
SEMIRTTTPTLQRNQYWV
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtaacagtcgtgtttccaccgggagaagaaagatggactctgttgtgaaaaac
acccagaagaagttgtggctccgcggtctgctttggtggtcgctcctgctcgagctggcg
tcgggagcttccttctacggtgacggctttgtacagctcaaggcaacagagtcgtccgac
cataacacgcttcgcattcgctttcgaacctccagtaccaacggcctgctgtttctcgcc
gccggccagaacgactactttctactagagctccatgctggtcgcctgcagctgaagctt
gacctcggatcaggggagctacagttacagtcagagaaaggcacccagctcaacgacctg
gcctggcactccgtggaggttcgccacgtgcagaacaacgtaaccctgactgtggacaag
aactctcaaactggtcttaagattccagcctccaatcataatctcgacatttcggatggg
ctttttgtcggaggctcaggaggcctggacaaaatgtacctacccagagaccagattggc
ttccgaggctgcatggacgaggtggtcttcaataaacatgacttgttgtcatcactgagg
ccatataccggattcaagaatgtccatgaggtttctttaggctgtagtccccaattcttt
gccacagaggaggaccctatcagtttcttcagctccagggcttacatctctcttccaacc
tggaacacccagcaggaagcagtttttgagtgtgtcgtgcacacttcagccaaagaggga
attatcctgtacagttcagccagagagggggacttcctggctgtggagattcaggaaggt
ttgccagtggccattgttgggaaaggtggaaccaaaaccgagcttcgatcacttacatca
atttatgacaggaaatggcatactttgaagttgcatttcagatctgaaagcctcgagctt
actgttgatggagagatggtgagaagcagcattagctcccagtcaaagaggcttcagctt
aaaggttctcttttcgttggaggtattgatgacggcaccagatcagaggccagaaaggtg
gggcttgtctctgtgtctggtaagcgtgtcagaggaggttcctttaaaggatgtctgaag
aacattgaagtcaacagagtgaaaacgggtctttccaatgctgtagtcaccaaggatatc
tcagttggttgtgagccagagacagaacatgaaccatcaaccactgtgagtccaacaagt
gctgctggatctctttttcacttggtaaccccaagaccgtcacttcaaacttccaccctc
gcaaagggcttggacagaaagtatggctcaaactttgtgcagttcaaaaaccttgtggtc
cctgaaggtggtcgagcatccctcgaggccaaacacatcaaggtgctcttagacttcaag
aagcttggcattcgacagtctcagattgtgttccaaattcgggagcaaccaattcggggt
cagataaggcttgatgtcgaccaggaccaagaggagaacacatttagtatgttggacctt
tggcatggaagagtgatgtatatccatggaggctccgaggaaccagatgatttcttcatg
ttttcaatttattcgagtagtagaaagcaagttcctgattatctgaagggcaacaaattg
taccgttacaatgttactatgacacctaccaacgatgcacctgaattgagtctccctgaa
ggtaatctctttgtgctgttggagaactcaaagaaacgcctcaccactgatgttctgagg
gccacagacattgacagcaattacaccaaccttgtcttttctgtgcttggaaacctgaat
gctgatgcaggatatttggaaattgaaaacaacccgggcaagtcagtgccctcattctca
tatctagacttggaggaagagaaggtgttctatgttcacacaggagttcgaaactcaaga
atagtccttagagttagcgatggggaaaaagttagcaatactgtggttttaagggtcatg
gctgtagcactggagtataagattgccaacaacacaggccttgaaatcattcaaggagag
tcagctatacttggtttaaaacagctggctgtgcaaacaaatgctataaaacaaatagtt
gacatccgatatgatataattgaaccccctcagtatggagaactccagagacttcactca
agcggtgaatggaggcatactgactcattttctcaaagacttcttgaaaaagggcgacta
aggtatgttagcacttttcaagaagtccagacgtccaacgtgaccgattactttaagagc
aaagttcacgttgctgcaagggcaaacactgaaatactttttccaatcactgtgaagtgg
gtgaagtaccacctggtgaggaatgttataatggatatggataaagttagaaaagtgaca
ctggactcagacaatctttttgccactgcggaaggtgtggtactctcagaggatgacctc
tattttcgggttctcaccacaccgaagaaagggaagctcctgctcgacaccactatcttg
accaagaactcaacctttagccaaagagatgtaactgatcaaaaagtacattacgagctg
gttgacaggccttatgaagacacaagtgacaggttcaagtttcagctggtttccaaacat
gctgagtcacaaaactatgactttcggtttactattaaagctgatgtcaacagcgtgttt
atgagaaatgatggtctctcacttatcgagggagaaagtaaacttattacaaaagatgcc
ctgtttgcagagactttgagtacaaaggatatgttctacacagtaataagcagcccaaaa
catgggaagctatcccgtattactcgatcaaattccaatgctagctacgacaacatctta
accttcagtaatcaggatatattggaggaacggataatgtacatccatgatgacagtgaa
tcaactcaagataatttcacttttatagcctccaccagccaagaatttaaatcctcaatc
acagaagatgaatttggttccaaagaaggattgtttaacatatcaattcagctagttaat
gaccaaaagccggtacgtgttattgataaagtgttcctagtagtaaagaatggacagaag
ttactcactatagatgatttgcgttatcatgatacagactctgactttgatgatggccag
ttgatttacactcgacgtggaatcccgatgggagatctagtgctcgttaatgacacctct
caccggctgttccagttccgacagaaggatttggaagacaagcgagtgttgtttattcac
aaaggtgtaaacatgggcagatttgtgctctttgtctccgatggaaaacactttgtatcg
agtcttttagacatcagtgcacaggacgctttcttgaaagttggcaacaatactggccta
atggttcagaagggccagtcagtaaccttttccaccagtaattttagtattgtttcaaat
ttggatatcagagatgaccaggaggtcgtcttcaagttggatgaggcccccaagtatgga
ggactttatcgcaatgagacagaagtggagttattctcactgtctgacttcaagaatggg
ataatgtcctatcggcacaatgacagcaaacatgttcccgagtatttcaacttaacagtg
aaggcaaaaggtcttgaacttgcagtgaggatcaatgtgaaagtgtacctggaaagtcat
caaaggccacccattgtgctgcatcacaacatcctactggtggaagaggggaaaccagtg
aagattagcgaagccaaactagaggtcactcacgaagacaacctgccatctgagattgta
ttcacagtcaagctagccccatctcatggctttatccggcgttttaccgatgcagaggag
cgctacatcggaaccaaacagtcccctgtcaggacgtttacgcaagaggacattaacagt
gggaacatccagtacatgcaggcggagcccaacaaaacgaacgacactttcatcctcgat
gctaccaacggagtgactgatgtcaacggcattaggatgtctattgacatcatcccacgc
ctcatcccagttgaagtcttcaatttcacgctgaacgagggcgcctccaaggctcttact
gaagatgtgctcaaagtcaccaacagacacttttctggaaacaacttcctgtatagtttg
actgagcccccgcagcacggtcacattgagcactctcgacataccggtgtggccataacc
tctttcaccaggaggcaggtggaacaggaattcatttactacgttcacgacagcagtgaa
accttagctgacaacttcactgtgatggccaacgacccgggcctgaggaagcagagtgcg
gcccagacggtgcatatccaggtttcagctgtcaacgacgagcctcctgttataacagcc
aacagggtcctcagggtttgggtgtcctcggtgacggagatcaggccggaggatctgaga
gcgcaggaccgggactccccccccgaggagctgcacttcatggtgatcccccccagcaac
ggtcacctggccctgaagagcgcccccatgaaggccctgctcaacttcacccaggctcac
atcgaccaggggcagctgctgtttgttcacaaaggtgccatgtctggaggattcaacttc
caagtgaacgatggtgtgaacttcactcccaggcagatcttcagcatcactgccagatcc
ttagttctcagcttagagaacaaccgtccaatcaaggtgtttccaggctcttcaactcca
atcacaaatgaggacttacaagcagtgaccaatgatattagcaacacctcaacccgcatc
attacattcagtttgattcggcagcctaaacttgggcgtctggtgacgaggcagcctgac
aattcaacagtggatatttccactttcacacaagacatggtggacaggaaggaagtggtg
ttcattcaaacccccatcgagtcagtgggctgggaagccatggactccatgaccttctct
gtggcatcatcgcctacaactctggacagccagaccttcaaaattgacatttcctatgag
aataccggacctgaacacaacacagtcttgctcgcaaacaaaggtgctgaggtaacagaa
ggggagagtgtcatcatcgatgaatccaagctggatgcctctaacctgatgtccaagctg
ccgacacctcagcggagctcccatgaggtctggttccaggtgacctctctgcctgagcat
ggtgtcatagtggtaggagagcgaaacctcaccaaagagaaacctaacttctcccagttc
atcgttaacaaatacggcattacctacaagcacgacaactccgagacaactcatgattct
tttgtattcagtacatggttaaatcctaaggggaaaactgctcaacgtccccaagatgac
attgatatcgttgaggagtattttaacctcacaatcacacctgtgaacgatcagccacct
ttgctaaaaaccaaagctccaagtctgaaggtggtacaaggagatacggtagccctcagg
cctgagaacctcaaagttgaagacttagacaatcctcccggtgatataaagttctctgtg
attagcaagccaaacaatggctacctagctcttggaggacatttgaatgagtcggttgag
accttcactcaagcccaaatcaacaatggaagtgtctatttcatccatgatggaagctca
gtgtcaggggtgttctacttcagtgtgacggatggccatcataaaccaatatataaactc
tttaacctagaagtgacggaaatcaccatttctctagtaaactacactggattgacactt
gagcaaggcaagacctcagtatccctgacccaacacaaccttgctgctgagaccaatggg
agaaacttcaccatacactaccagattacaaagcctccacattttggcaagcttttgaag
gacaaccaagaggtgacaacgtttgaacaggaggatctacaggctggaaggttgtcctac
cacatgatctccctttcctctgcagaggacagctttgtattcactgccttcacttcagag
gcaaatgtgaccaatcaagtgtttaacataacagtcagacctttaatccaggttggcaaa
ggttttagcattccaaatggtattgctgtcaaactcaacgctggctttcttaatgcctct
gaactggctaatatcagtaatagtgaccctacatttgaaattatctcccatcctaagtat
gggaaggttgtttggacaaaacctaaaatgtccaagaaagctgtaccggctgagtccttc
acctttcaggaggtgatgcaggagatgttagccttgcagctgaatgccaacatgacggga
gttcaagagctaaatgactcactggtgttcgtactgaaagctgataacgtccaacctgct
aaaggcgagttccattttacagttgtgccatatgatgcggcactttttccaaccacaaag
agtcccgttccaaccacatcatctgttcctcggactccaatccacacttccagaaatggg
actgcttcgcccgtcctgttgacagctttcctctccacccagcaaacaagcaaaaaccag
caaaaggtcaaggcacgcaaccgatggggaaactccaacagaactagcatatttagcacg
actcttggcaagcccacgcagggaacagaggacttcccctttaggaacacacctgtacgc
gtagagtcctaccctcaaaagacctccagtccgctcctggtcatcttaccactgctggcc
cttctgctgcttataatcatctttgtagtcttggttgtctttcttcgacaccacaggcat
cggagaacttcctcatcaaaagagaccgcttccactgatgttccaagcagtcagtcctac
cgtggtcaaccccagaggagcccaacagttcccacagtgactgtcactccattaaacccc
agctgcccaaatagccccttgtttgatcgcttattgacgacaaatcagggctcagcgtat
aacactgttgattctaacatacttttaagttcttggaagaacggttcccctgcatcatct
tccgaaatgattagaaccaccactcccactctgcagaggaatcagtactgggtatga
DBGET
integrated database retrieval system
