Trematomus bernacchii (emerald rockcod): 117473228
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Entry
117473228 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
117473228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117473228
Membrane trafficking [BR:
tben04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
117473228
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
117473228
RAVE complex
117473228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_WDR19_2nd
Beta-prop_DCAF12
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
117473228
NCBI-ProteinID:
XP_033974643
LinkDB
All DBs
Position
Unknown
AA seq
3099 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGIVNNVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVECSLQGGQIAASYGSIVCVFEPVQPPDQKDTSPPKLNCQWQKTGQFVLKSMVRNLAW
HPTGSTLLTGSSSLQLWSHIDEVNDEAEEGGRQKEMTIGDFLSAWRCIWESKTASPVSLM
KFSPDGEFFATAGQDDCLVKVWYSTGKWKFGVSRLFTPPEPSDSFQAELAFSFVYLAHPR
SVTGFSWRKTSKYMPRGAVCNVLLTCCKDSVCRLWAETLLPGDSLLSGYHSNHTSAQHND
TPRSAGPSWKNACNGKSQGKMAQGSQFQESLHASFHRDVPQPSLTGCLPHNQSRHYNHKR
SSSSMPHANALCHFHIAASINPATDIPLLPSISSLSAADDEEPGGPFTVHWLNNKELHFT
LAMEVFLQQLQGSLEQQNECSNEEPEDEENCDEDNGSRPGDSQEPEAVELPLAAVKHQVN
VLLEEWNKGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDAI
SLSHSVVMYACNKNVDLAIQHGRQRPPGSTLPQTKSALISYRGQGKTAPSSSLRLSIFTP
NVLMISKHSDGSLNQWAVGFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTT
SHHNALRTPEADSILAPPDTYSSGFSHPASLPRGSRPSRSSLGVVSQDPNAIYSELILWR
VDPVGPLSLSGGVSELARINSLHASAFANVAWLPTFIPSSCLGVYCNSPSACFVASDGHS
LRLYQAVIEAKKLLSELSNPEISKYVGEVFNIISQQSTAKPGCIIELDAITDFQGKQTQL
LHVFEEDLILGSERKENTQETPDSPHTASSDTAFSARFFLVVVELTPTGRSLLHMWHLHL
AARPITTEETSTKNDASSASDMNSSTFSFDTFGSPVPQKSKPCTSNLQSACRLSLTTHRL
YSQEMALPEGVEAISVTPSAGHLSASCSLPADRLPYLLATSCSDGKVRFWRCTVMEPSSM
DNLVYQWEEWPLLVEGMLSNSSAVSVQGHPIEVSCCHSGRIAVAYRQTPNSPLNSTPYLN
SQGLLTCPPTLACSPFINSTNTHMTPTVTVQHSPNLTPSPNQANTNEPLVHISIFQCEST
GGSQWILEQTIVLDSTESANIPGAMDCPIPNQYCPASSSASLVHLDWVSQEDGSHVLTVG
IGTKIYMYGRLSGKPPELGLSSEASRDLSSSRLVLLRSVNLVSSVEGSLPIPVSLSWVRD
GILVVGMDCEMHVYSQWQPPAPLKAAVAQDTDMSSSVSSIISAVRQSQEEGLSSGAPMST
LAPPKRALTRSMMSLAQKLSGKRTAYDLPLEKEDSGLFEAAHQLFPTLPQYHPVQLLELM
DLGRVHRAKAILSHLVKCIAGEIVALKDSTTNPEKRLRSRTISAGGSTARDSKMFSKAEN
SPPDYTEISSIPPLPLYALLAADDEDTSPKPDKVGSVSGDSGHGSIHADVYDELFQAPSI
VDLDPLEDDQEETGNKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPGLTRMEQMSLMALA
DTIATTSTDLKDSQGKSKGGETLDECGLKFLLAVRLHTFLSTSLPPAHRAQLLRQGLSTC
HYAWAFHSEAEEELLNMLPALQKGQPTWPELRSMGVGWWLRSTNKLRKCIEKVAKTSLQK
NNDPLDAAIFYLAMKKKAVVWGLYRSQRNAKMTEFFRNNFSEDRWRKAALKNAFSLLGKQ
RFQHSAAFFLLAGSLKDAVEVCIEKMQDLQLALVISRLYESEFETASTYKKILRRNVLGQ
DKQIPAQKDPFLRSMAHWVLEDYSRALDTLLEQPADRTSSRSTESKCDTGSSSVSACNPE
VFNFYTYLRTHPLLLRRHFGSSEKAKVGLTAERRRADSISLEERRLFFTAAYAHLQAGCP
MLALEVLSKMPKVRKHSKFPHHEGAGIAAELSVGSKNGQGSEQDWSQSALNGFESDRNSL
CNSRSDSVLSFDWSGQPSMAHPDEPLELKWESDKDDEEEDEEETKNGKSGRTEDGSIVFQ
DAQDAQDAQDAMSPLLETVPGEESEDDFLAPSNDILAAHLKFTACLKIMTNELRTLSTGY
ELDGGKLRYQLYQWLEREVVALQRCCSYKPCLPELSAPRGASVSGLGEEEQPGSPRADIQ
RTRWHWLQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESHQDDSLQAVMPCCQP
TSIPLLMACTANVKTVVANPIVYLTNLAHDILQTINSLDSPPHPDVVNNEIYVMHTLAAS
LSACIYQCLCDGHTHSHVNHFTGIVYQSVLLSQKQPARTVSMDESVQPNTPPAQWPGIAS
LIRLLSSAGEESQPGLAVLLCEIVTAVFLSLFVHGMATHSSNELFRIVAHPLNSQLWVSV
FGGGARTPVIEKPTSPTRTQPPASPSGSDRKSRRFRLLSSRSGSKDESGVEREGPCSPKH
SPVVEQEATSIFKERFIPPELSIWDYFITKPSLPQSENQIEYDSEESQGSQDEEEDDDQY
EDVFDPSSPHREHSNHNSYSWCLMRLAMVQLVLVNLKTFYPMAGYDLLDLPVCSPLCHAV
LKTLQRWEQVLQKRLEIFGGPPSKYISTTPQDETTAPGPALLRHKALFEPSNTPFRTSHH
SALPVKRLWQYLVKQEEVQETFIRNIFTKKRDPNESGEDQTDNMKCAGMEETGNHQAESD
LGSPGGKSRIIHKESDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDEE
AEAKGVTDDFLVVHARDDFATIHGTTPYTHSSPGTPINMPWLGGVQTGRGAAVMIKRNIN
NVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIV
DADGGLSLWQTNTSGTAPKPYLTLHCHSKTANDFVFVGSSSLIATAGLSTDNRNVCLWDT
LVTPANSLVHAFCCHESGATVLLMASRQQLLITGGRKGWISVLELAPRRQRQSFLAHDSP
VKALAVDPTEDCFISGSAEGNIKIWSLATQCPLYNFPNEHARQSLFRNLGTGVMQIEVGP
ANHIFSCGADGTMKMRVLPNRFSVANNNNNHNSDVKFII
NT seq
9300 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcactggggctgtcaaccctggagacaattgtttctctgtt
ggcattgtcaacaatgtgccattcacggcttatgcgtcaggttgtgacgtggtgattttg
ggcagtgactttgagcgtctgcagatcatcccgggggccaaacatggcaacatccaggtc
ggctgtgtggagtgctcactgcaaggtggacagattgcagcttcctatggaagcatcgtg
tgtgtctttgagcccgttcagcccccagatcagaaggacacatcgccgcctaagttgaac
tgccagtggcagaagactggtcaatttgtgttgaagtctatggtacggaacctggcctgg
caccccacaggcagcaccctcctaacaggctctagtagcctccagttgtggtctcatata
gatgaagtgaacgatgaagctgaagaaggaggaaggcagaaagagatgaccataggagac
tttctttcagcctggaggtgcatctgggagagcaagaccgcctctccagtgagtttaatg
aagttctctcctgatggggaattctttgctactgctggacaggatgactgcctggtaaag
gtctggtacagcaccggtaagtggaagtttggtgtttccagactcttcacacctccagag
cccagtgacagtttccaggcagagctggccttctcctttgtctacctggcccacccccgc
tctgtaactggcttctcctggaggaagaccagcaagtacatgccacgaggtgcagtgtgt
aatgttctgctcacctgctgtaaggacagcgtgtgtcggctctgggcagagacgctgttg
ccgggtgacagcctcctctcaggttaccacagcaaccacacttctgcccaacacaatgac
acgcccagatctgctggcccttcttggaaaaacgcctgcaatgggaagtcgcaaggaaaa
atggcacagggatcacaatttcaagaatcattgcacgcctcctttcatcgggatgtcccc
cagccctctctgactggctgcctgcctcacaaccagagccgacactacaaccacaagagg
agcagcagcagcatgccccacgccaacgcgctctgccacttccacatcgctgccagcatc
aaccctgctacagacattcctctgctgccctccatctcctctctgagtgccgccgatgat
gaagaacctggaggcccttttactgtccactggctcaacaacaaggagcttcatttcact
ttagctatggaggtcttcctacagcagctccaaggcagcctggaacaacagaacgaatgc
tccaacgaagagcctgaggatgaggagaactgtgatgaagataatggaagcaggccaggc
gactcccaggaacctgaggctgtggagctccccctggcagcggtgaagcaccaggtgaac
gtgctgctggaggagtggaacaaaggggcggacatgttgttcagtatccatcccatggac
ggctctctgttggtgtggcatgtggactggttggatgaataccagccaggcatgttcaga
caagctcaggtttcctttgtgtcccgtatccctgtggcgttccctacaggtgatgccatc
tccttgagccacagtgtggttatgtacgcctgcaacaaaaacgtagatctggctatccaa
catggcagacagcgaccacctgggagcacattgcctcaaaccaaatcggctctaataagc
tacagaggtcaaggaaaaactgcacccagcagtagtcttcgactgagcatcttcacccca
aacgtcctcatgatctccaaacactctgacggctccctgaaccagtgggcagtcggcttt
gccgaggactctgctttctccactgtgctcagtgtctctcacaagtcacggtactgtggc
caccgcttccacctcaacgacctggcctgtcactctttgctccctctcctcctcaccacc
tcgcaccacaacgccttgaggacgcccgaggcagacagcatcctggctccccccgacacc
tactcctctggtttctcccaccctgcgtctctgccccgagggtcacggcccagcaggtca
tccctgggtgtagtttcccaggatccaaatgccatctacagtgagcttatattatggaga
gtagaccccgttggcccgctgtctctgtcaggcggggtgtctgagcttgctcggatcaat
tctctccacgcatcagcgtttgctaatgtagcctggctgcccacgttcatccccagcagc
tgtttaggtgtgtactgtaactctcccagcgcctgcttcgtggcgagtgacggccactca
ctccggctgtatcaggctgttattgaagctaagaaactcctgagtgagctctccaatcct
gagatatcaaaatatgtcggggaggtgttcaacatcatcagtcagcaatccacagcaaaa
ccagggtgtattatagagctggatgccattacggactttcaggggaagcagacccagctt
cttcatgtgtttgaggaggatctgatcctcggcagtgagagaaaggagaacacacaggaa
actcctgattcccctcacactgcctcaagcgatacagccttctctgcacgtttcttcctt
gtggtggtcgaattgaccccgacaggtcgctcgctcctccacatgtggcatctccatctc
gctgcccgacccatcaccacggaagagacctcgacgaagaacgatgccagctcagcttct
gatatgaacagctctacgtttagctttgacacgttcggttctccagtacctcagaagagt
aaaccctgcacttcaaatctgcagagtgcctgtcgcctcagcctcacaacacacaggctc
tacagccaagagatggctctgccagaaggggtggaggccatcagtgtgacaccttcagca
ggtcacctgagcgcatcatgctctctgccagctgatcgtctgccttacctgctcgctact
tcctgttcagatggaaaggtgcgtttctggaggtgtacagtcatggagccttcaagtatg
gacaacctggtgtaccagtgggaggagtggcctctgctggtggagggaatgctttctaac
agcagcgcagtaagcgtgcaaggtcatcccatagaagtgagctgctgccactctggacgg
atcgcagtcgcctacaggcagacaccaaactcccctctcaactcaacaccttacctgaac
tctcagggacttttgacttgtcctcctactctggcctgctccccttttataaacagtacc
aacacccacatgaccccaactgtgactgtacagcatagcccaaatctcacccccagcccc
aaccaagcaaacaccaatgagccattggtccacatcagcatctttcagtgcgagtccact
ggtggctcacagtggattctagagcagaccatagtcctggacagcacagaaagtgccaat
atcccaggtgccatggactgtcctatacctaaccagtactgtcctgcctctagtagtgcg
agcctggttcatttggactgggtctcgcaagaagacgggtcacatgtcctcactgttggt
atcggcacgaagatttatatgtacggccgtctctctgggaaacctccagaactgggtttg
tcatcagaggccagtagagacctgagctcgtcccgtctggttctgctgcgctcagtcaat
ctggtctcctctgtggaaggctccttacccattcctgtgtccctctcctgggtgagagat
ggcattttggtagtaggcatggactgtgagatgcacgtctactcccagtggcagcccccg
gccccactcaaagccgccgttgcccaggacacagacatgagcagcagcgtctcctccatc
atctctgccgtcagacagagccaggaggaggggctcagctctggggcccccatgtctaca
ctggcccctccaaaaagggccctgacgagatccatgatgagtcttgctcagaaactcagt
gggaagagaacagcttacgacctgccgctggagaaggaagattctgggctttttgaagca
gctcaccaactctttcccactctgccccagtaccaccctgtacagctgctggagctcatg
gatctcgggagggttcaccgtgcgaaagccatcctgtcccatctggtgaaatgcattgct
ggagaaattgtggctcttaaagacagtacgaccaaccctgagaaacgcctgcgctctcga
accatcagcgccggaggcagcacggccagagactccaaaatgttcagcaaagcagagaac
tccccccctgactacacagagataagctccatccctccgctgcctctctacgccctgctg
gcagctgatgatgaggacacgtcacctaaacctgataaagtgggcagtgtgagtggagac
agtgggcacggttccattcacgctgatgtctatgatgagctctttcaagcgcccagcatc
gtggacctggaccctctggaagatgatcaagaggaaacgggaaacaaggttattgacctg
tcgcagtacagtccgacattcttcggcccagagcatgctcaggttctgtccagtcacctc
ctgcattccagtttgcccggactgacccgtatggagcagatgtctctcatggcgctggcc
gacaccatcgctaccacaagcacagacctcaaggacagccaaggcaagagtaaaggtggt
gagacgctggatgagtgcggtctgaagttcctgctcgccgtcagactccacaccttcctc
tctacctcgctgcctccagcacaccgggcacagctgctacggcaaggcctgtcgacatgt
cactatgcctgggccttccactccgaggctgaggaggagctgctgaacatgctgcctgct
ctacagaagggacagcccacctggccggagctgcgctccatgggcgtgggctggtggctg
cgcagcaccaacaagttacgcaagtgtatagagaaggttgccaagacttctttacagaaa
aacaatgatcctctggatgctgctatattttacctcgcaatgaagaagaaggcagtggtc
tggggattgtacagatctcagaggaatgccaaaatgacagagttcttccgcaacaacttc
agtgaggacaggtggaggaaggcagccctgaagaacgcgttttctctgttggggaagcag
cggttccagcattctgcagccttcttccttctagccggctccctaaaggatgctgtggag
gtgtgtatagagaaaatgcaggacctacagcttgcactggtgatctccagattgtatgag
tcagagtttgaaacggcatccacctacaaaaagatcctccggagaaatgttctgggacaa
gacaagcagattcccgcccagaaggatccgttcctgcgtagcatggctcactgggtcctg
gaggactacagcagagcgttggacactctcctcgagcagcctgctgacagaaccagctcc
cggtccacggaaagcaaatgtgacaccggctcctcttcagtgtctgcctgtaaccctgag
gttttcaacttttacacctaccttcgaacccacccactcctccttcgccgccactttggc
tcctcggagaaggctaaagttggactgaccgctgagcgccgcagggcagactccatcagc
ctggaggagaggagactgtttttcacagctgcttacgcacaccttcaggctgggtgcccc
atgctggcacttgaagtcctctccaagatgcccaaagtccgcaagcattccaaattccca
caccatgagggtgcaggcatcgcggctgaactcagcgttgggagcaaaaatggacaaggt
tcagagcaggactggtctcagtcggctctgaacggcttcgagtcagacaggaacagcttg
tgcaacagccgctcagattcagtgttgagttttgactggagcggccagccgtcgatggca
catcctgatgagcccctggagctgaaatgggagagtgacaaagatgatgaagaagaggat
gaagaagaaacaaaaaatggtaagagtggcagaactgaagacggcagcattgtgtttcag
gatgctcaggatgcgcaggatgcgcaggatgccatgtcgccgctattggagactgtgcca
ggagaggagagtgaggatgacttcctcgctccttctaatgacatcttggcggcccatctg
aagttcaccgcctgcctgaagatcatgaccaatgagctgcggacactgtccacgggctat
gaactggatggagggaagctacgttaccagctctaccagtggctagagagagaggtcgtg
gctctccagcgctgctgcagctacaagccctgcttgccagagctgtctgccccgaggggg
gcgtctgtctccgggctgggcgaagaggaacagccggggagccctcgtgctgacatccag
aggaccaggtggcactggctgcagagcaaccagcccctactgaggatgtttctgagctac
tgcagcctacatggctcccacggaggaggactggcctctgtgcgcatggagctcattctg
ttgcttcaagagtctcaccaggatgactccctgcaggcggtgatgccatgttgccaacca
acatccatccccctcctgatggcctgcacggcaaacgtaaagacggtggtggccaatccc
atcgtctacctgaccaacctggctcatgacatcttacagaccatcaattcactggactct
cctccacaccctgatgttgtcaacaatgagatctacgtgatgcacacattggctgcctcc
ctgtccgcctgtatctatcagtgtctgtgtgatggacacacccacagccatgtgaaccac
ttcacaggaattgtgtatcagagtgttttgctgtctcagaagcagcctgcccgaaccgtc
agcatggacgagtccgttcagcccaacaccccccccgcacagtggccaggtatcgcctcc
ctgattcgcctgttgagctcggcaggcgaggagagccagccaggcttagctgtgctgctc
tgtgagatcgtgactgctgtcttcctcagtctatttgttcacggcatggccactcactca
agcaacgagctgttccgcatcgtggcccaccctctcaacagccagctttgggtgtcggtg
ttcggaggaggcgctcggacccctgtcatagagaaacccaccagccccacaagaacacag
ccaccagcctcaccaagcggctcagacaggaagtccagacggttcagactcctgtcctca
cgcagcggatccaaggacgagtcgggggtagagcgtgagggcccatgcagtcccaagcac
agccctgtagtggaacaggaagctacctccatctttaaagaacggtttatccctccagag
ctcagcatttgggattactttatcaccaagccttcactgccacaatcagaaaaccaaatt
gaatacgactcggaggagagccagggcagtcaagatgaagaggaagatgatgatcaatat
gaagatgtgtttgaccccagctctccgcacagagagcattcaaaccacaactcatacagt
tggtgtttgatgcgtctggcaatggttcagctggtgttggtcaacctcaaaaccttttac
ccaatggcaggatatgatctattagatctgcctgtgtgctctcctctgtgtcacgctgtg
ctgaagacgctgcagcgctgggagcaggtgctgcagaaaaggctggagatcttcgggggc
cccccttcaaagtacatctccaccaccccccaggatgaaaccacggcgcctggcccagcc
ctgctcagacacaaggccctgttcgagccttccaacaccccattcaggaccagccaccat
tcagcgctgccagtgaagcgcctgtggcagtatctggtgaagcaggaggaagtgcaggag
actttcatcagaaacatcttcaccaagaaacgggaccccaatgagtcgggtgaggaccag
actgacaatatgaaatgtgcagggatggaggagacaggaaaccatcaggctgagtcagat
ctgggctcccccggagggaagtcacgcatcatccacaaggaatctgacatcatcaccgcc
ttcgccatcaacaaggcaaatcgtaattgtttagtcatggcctccacccatgacatccag
gagttggatgtgtcatccatcttggccacacagatcttgacatggatcgatgacgaggag
gccgaagccaaaggtgttaccgatgacttcctggtggtgcatgcacgcgatgactttgcc
accatccacggcaccacgccgtacactcacagcagcccgggcacccccatcaacatgccg
tggctgggtggggtgcagacaggccggggtgcagccgtgatgatcaagagaaatatcaac
aatgtgagaagaatgacctcccatcccacactgccgtactacctgacaggggcgcaggat
ggaagcgtccggatgttcgagtggggtcactcccagcagatcatctgcttcaggagtcca
ggcaactccagagtcacccggatacgattcaaccaccaggggaacaagtttggtatcgtg
gatgctgatggaggtttgagtctctggcagaccaacaccagtgggactgctcccaaacca
tacctgacgctgcattgccacagcaagacagcaaacgactttgtcttcgtgggctcctcc
tccctcattgccactgcaggactctcaacagacaacaggaacgtgtgtctgtgggacact
ctggtgactcctgccaacagcctggtgcatgcgttctgctgccacgagtccggggccacg
gtgctcctgatggcctccaggcagcagctgctcatcacgggagggaggaagggctggatc
agcgtcctggagctcgccccgcgccgccagcgccagagcttcctggctcacgactccccc
gtcaaagctctagctgtcgaccccaccgaggactgcttcatcagcgggtcagctgagggc
aacatcaagatctggagcctagccacacagtgtccgctctacaactttcccaacgaacac
gctcgccagtcgctcttcaggaacctgggcaccggcgtcatgcagatcgaggtgggaccg
gccaatcacatcttctcctgcggcgctgacgggaccatgaagatgagggtcctccccaac
cgcttcagcgtcgccaataacaacaacaaccacaacagtgacgtcaagttcatcatatag
DBGET
integrated database retrieval system
