Trematomus bernacchii (emerald rockcod): 117473252
Help
Entry
117473252 CDS
T09643
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03420
Nucleotide excision repair
tben04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117473252 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
117473252 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117473252 (ercc8)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117473252 (ercc8)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117473252 (ercc8)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
117473252 (ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
NBCH_WD40
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
WD40_RFWD3
WD_LRWD1
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
117473252
NCBI-ProteinID:
XP_033974672
LinkDB
All DBs
Position
Unknown
AA seq
401 aa
AA seq
DB search
MLGFLTARQAGVDDPLRLRRAESTRRVLGLKLNPDRDVDRIHGNGINTIDIEAVEGRYML
SGGADGVIVIYDLENYSRKLLYTCKAVCTVGRSSRYVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEGNVYSHHLSPIARKHSLIAVGTTDPKIQLCDLKSGSRIH
VLQGHRAEILSVRWSPRYDHILATASADSKVKVWDVRRASGSLFTLDQHNGDKSKASSEA
VNTAHNGRVNGLCFTGDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKRLQFTV
SRGCSPEFVFVPCGSSVAVYALHTGELVTMLRGHYNNVDCCEFHPDYQELYTGGKDCNIL
AWVPAPRAPDVEEESKSANQAAADQSSVNPAFQDAWSSDED
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgttggggtttcttacagccaggcaggctggtgtggatgatcctctgcgactgaggcgt
gcagagtcaacgcggagggtcctgggtctgaagttgaatcctgacagagatgttgataga
atccatggaaacggcatcaacaccattgacattgaagcagtagagggcagatacatgttg
tctggcggcgcagatggagtgattgtcatctatgacctggagaactacagtaggaaacta
ctgtacacctgcaaggcagtttgcactgtaggcaggtcgagtcggtatgtccacaaattc
agcgtagagacagtccagtggtatccttatgacacgggcatgtttgtctcgagttccttt
gacaagaccatgaaggtctgggacactgagacactgaagcctgcagaagtctttgagttt
gagggcaatgtctacagccaccacctctcccccatcgccaggaagcacagtctcattgca
gttggcaccacagaccctaaaatccagctgtgtgacctgaagtctggttcacggattcat
gttcttcagggccacagagcagagatcctgtccgtgcggtggtcgccccgatacgatcac
atcttagccactgccagtgcagacagcaaagtgaaagtatgggatgtgcgtcgggcttct
ggtagtctcttcactctggaccaacacaatggagacaaatcaaaagcatcctctgaggca
gtgaacacggcgcataatggcagagtgaatggcctgtgcttcactggtgatggcctctac
ctcctcaccactggaactgatgaccgtatgcgactatggaatagtgcaactggggaaaac
accctggtaaattacgggaaggtctgcaacgagagccgtaaaaggcttcagttcacagtt
tcccgtggctgcagcccagagtttgtgtttgtgccctgcggcagctcggtggctgtgtat
gccctccacacaggagagctggtcaccatgctcagagggcactacaacaacgtggactgc
tgcgagtttcacccagactaccaggagctctatactggaggtaaagactgtaacatcctg
gcgtgggttcctgcccctcgtgccccagatgtggaagaagagtcaaaaagtgcaaatcag
gctgctgctgaccagtcctcagtgaacccggcctttcaggatgcatggagtagtgatgaa
gactaa
DBGET
integrated database retrieval system
