Trematomus bernacchii (emerald rockcod): 117473364
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Entry
117473364 CDS
T09643
Symbol
tnrc6b
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117473364 (tnrc6b)
03036 Chromosome and associated proteins [BR:
tben03036
]
117473364 (tnrc6b)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117473364 (tnrc6b)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117473364 (tnrc6b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
117473364
NCBI-ProteinID:
XP_033974814
LinkDB
All DBs
Position
Unknown
AA seq
2275 aa
AA seq
DB search
MEDKKRKKDDKRKREASQKVTEQKNKVPDLTKPAVVQSPATQSSSASPSPGPAPSASPSP
ATTLGPGSAATPSQGGNNAKRLAVANGQPTSNTISSSTAGGPGAAGNGSSASSGGGASAP
QQQQQARYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGGGGGGGGGDGPNANMAA
VSDPGAAASSLALTSSSVAASTTTSNYANSMWGASSGSQTSSQGREKVIVDGNDLEEWPS
IAGNDGGGGASFTVAVGGGASSSSSSSSNNNNNVMPVNSISASGNQSSPTSSFSLPNECM
QSSNGVAWGTAASPGHLAGGGAVAAAGPPLPPPPTPSSLSKASAVPGSHEASGPVDGSSS
GIPGANFNPNANPSAWPALVQQEGEGAPSSFHHQGTAGSLSANNPPSLGLGGGAVGVLGG
HPPLSVNQSSTHQRQLHQMQSRDREMGGGKWDSESAGPKIAGGGEGIGGGMDRGGGESGG
DHGLASSWRGQSSYPAANSKTGASRTDGWEGGGAGGFGAAEGDNGTSSWGYQSATSGASA
WGSAGNGSQTSGVSQGGWGSSGSGSGGGGGDWGGSSAAAASGANPAGEGVGGVCSSNSSS
SGGSTAGNPPAAPSSSSSSSAAATTTTRAWDNQKGESETGEWGSGGQEAQGGSSSSGGNS
RSGNGRSHSRPLIPAPNAEAALQTLLSRSDLDPRVLSNTGWGQTQIRQNTSWDFEEHGGK
SKSGSSSATAKHASSAPGGSSQYSGGPRTQINESTGGPGVNPSLGPSAGSAGGEGWESSS
NSSSSGASLSGRAPPPPPSGHNMRNLGVSQSGPTAGPGMGSGGMSGHSQQGKATGWGGGG
GGGGGDGQQAKGWGSEEWRDGSRGGTGGGTGGGNGGGTGGGGGGGGGGWGDPGQQGDPAS
GGWGGNNNNKEEKAPGGWKEMGGNGGGRSGWGSGQKGGAGRDWGEQQSKSNSSAGGGGGW
EDEKKSGGGNSGGDSGWGSWDEGAPRRTWGAGGTGGGNGGGMGVSGGGGMGGSKPHQSWS
GGNKMHQMPNSQPGPVPQAQLQQQQSQQSQPRNQHPQRAMDQGAMQGGGGGGGGGKKPIS
QAPNQNQSSGWTSGPIPAGAGGGGGAGGNSGGGGGGNGGGNGGGNGGNGGGVGGESEPSG
WEEPSPQSISRKNEIDDGTSAWGDPTHYSYKPVNLWDKNAAAAAGQQQPPPPPHDQQPHV
QAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQERQQQQQQQQQQAPPI
QHPPARQAAGIGGNRDFNPGHGPAKTSAIGPSGWGGNSPASPTADNGTIAWGKTNEAPSG
WGEPEDAGGKTSGWGNPSPNPIKSGSKSMQDGWGDKEASVAATRHSSWEDEEEGGGGGGG
GMWNSAGSQGSGSSWGQGSNGGWGQSHQEKKPSSKGPMKPGGGDSWMSPINRQFSNMGLL
NDDPSGQNNNMDLAPGSLQEKKMEAEKRAMGMNMNDYNGDMRKVGRGGGGMGYRPPGSKE
AAPGDAGSYYDKTLPLTNQDWCLGEEGPCSLYSPPTVYKSHSLFNHTIPFRQGGHNIFGN
SGGMAQSRHPPSVPPLNQSPGIRAQVPHQFLSPQVPGSVLKQMPPPTGSVGGVGGVGGVG
GVGGGVFPPQLSPQHIAMLSSIYPPHIQFQLACQLLLQQQPQQQQQQLLQNQRKFPPNVR
QQADPQQLARIMAVLQQQRQQQQQAGGLGSSSKLSPSHHGGVGGPKLPGADSLPHPGLAA
SVADLHQKNLGPYSGFGSGVNLPGLDMGGSSVGGPGGMKDLGIQQSRFKWMMEGHSSPDT
SSPENAFHKNGPVTPMKMPGGSPYSQYDMMVGDGLGDNWHRTPGNKMGPKPPPTPSWPPE
FQPGVPWKGIDRVDPDSDPYMTPGSMMGNAVSPNLNDSEHQLLQDNTDSTPPLNTLLPSP
GAWPYSASDSPLNNAHNSAKYTDYKTSWPPEPIGHKSWKANRGSSQMSQMSQMSQMSQMS
RIPPGLASQKQPSPSPWSGGAPRLAGRGWGGSSSSTASTWSDGSSRESCWLVLSNLTPQI
DGSTLRTICMQHGPLLTFHLGLTQGTALIRYGSKQEAAKAQSALHMCVLGNTTILAEFVS
EEDVARYIAHSQAGGGGGAGSGGGGNPANSSGSGPTSSSSSAVGANGNGGSCDRSGGGGN
NGGEGGGGGTAGNGGGASSSGWQSLDSTGSSSDQTSTQGPGLGVYSQWSSNGTVVGGAGG
VEAGRQGLWGGMSGPGYPSTSLWGTPALEDRHQMGSPASLLPGDLLGGGGRLTHF
NT seq
6828 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaagacgacaaaaggaaaagggaagcctctcagaaggtc
acagaacaaaaaaacaaagtgccagacttgaccaagccggcggtcgtccagtctcctgcc
actcagagcagctctgcctcccccagccctggacccgccccctctgcctccccatcccca
gccaccaccttgggccctggcagcgctgccaccccgtcacagggcggcaacaatgccaag
cgcctggcggtggccaacggacagcccacctccaacaccatttcttcctccaccgctggc
ggccccggcgctgctggaaacggcagcagcgcgagtagcggaggcggagcttcagcgcct
caacagcagcaacaagcgcgctacatgccgagagaagtgccgccgcgatttcgctgccag
caggaccataaagtgctactgaagagggggcagccgccactgtcctccatgctgctcgga
ggaggaggaggaggaggagggggaggagggggggatggccccaatgcaaacatggctgct
gtctcagatcctggtgcagctgcctcctcattggccctcacctcatcatcagttgctgct
tctactactacttctaattatgcaaattccatgtggggggcgagctcaggcagccagacc
tcctctcagggcagggagaaggtgatcgtggatggcaacgacctggaagagtggcccagc
attgccggcaatgatggtggtggaggggcttctttcaccgtggccgtgggggggggggcc
agcagcagcagcagcagcagcagcaacaacaacaacaacgtaatgcctgtgaacagcatc
agtgcctctggcaaccaatcctcacccacttcctcgttctctttgcccaatgaatgtatg
cagtcgtccaacggtgtggcgtgggggacggctgcctccccgggtcatctcgcagggggg
ggtgcagtagctgcagccggaccccctctaccaccaccacccacaccctcctcactttcc
aaagcctccgctgtgccggggagccatgaagccagtggccccgtggacggcagcagcagc
gggattccaggtgccaacttcaatccaaatgccaacccttcggcctggccagctctggtg
cagcaggagggggaaggagctccgtcttccttccatcaccagggcaccgcagggtccttg
tctgccaacaaccccccctccctgggcctggggggtggggcagtcggggtgctggggggt
cacccacctttatctgtgaatcaatcaagcacccatcagcggcaacttcaccaaatgcaa
tccagagaccgagagatgggtggggggaagtgggacagcgaatcagcgggaccaaaaatc
gcaggtgggggggaaggaattgggggaggaatggaccgtggaggaggcgagagtggggga
gaccacggcctcgcctcctcctggagaggccagtcttcttaccctgcagctaactccaaa
acgggtgcctcaaggactgacggatgggaggggggcggagctggtggattcggagctgct
gaaggagataacgggacctcgagttgggggtatcagagtgccactagtggggcgagtgct
tggggtagtgctgggaacggcagtcaaacctccggggtatctcagggagggtgggggtca
tcgggaagtggaagtggaggtggaggtggagattggggagggagctccgctgctgccgct
agtggagctaatccagcaggcgagggggtcggtggagtctgcagcagtaacagcagcagc
agtgggggcagcacagctggaaacccccctgcagccccttcctcctcctcctcttcctca
gcagccgccaccactacgaccagagcttgggacaatcagaaaggggagagtgaaacgggg
gagtggggaagtggaggacaggaagcacagggagggtcctcctccagcggcggaaattcc
agaagtgggaacgggcgaagtcacagtcgtcctctcatccctgcacctaacgctgaagct
gccttacagaccctgctcagccggtccgacctggatccccgggtcctgtccaacacggga
tggggccaaacgcagatccgacaaaacacgtcctgggactttgaggagcacggagggaag
agtaaaagtggatcgtcgtcagctacagcgaagcacgcctcctctgctcccggtggttcc
tctcagtactcgggtggacccaggactcaaatcaatgaatctactgggggtccgggggtc
aatccttccctgggtccctccgcagggtccgcaggaggagagggctgggagagcagcagc
aacagtagcagtagtggggcatctctttctgggagagccccaccaccaccaccttcaggc
cacaacatgaggaatcttggcgtctcacaatctgggccgacagcgggaccgggtatgggg
tccgggggaatgtcaggacacagccagcaggggaaggctacaggctggggaggtggagga
gggggagggggaggggatgggcagcaggctaaaggctgggggagtgaggagtggagggat
ggcagtagaggaggaactggaggaggaactggaggaggaaatggaggaggaactggagga
ggagggggggggggaggaggaggatggggggatcctgggcaacagggtgaccctgcgagt
ggaggctggggaggaaacaacaacaacaaggaggaaaaagcaccaggcgggtggaaagaa
atgggagggaatggaggagggaggagtgggtggggatcaggacagaaggggggggcgggt
agggactggggagagcaacagtccaaatcaaatagcagcgcaggaggaggaggaggatgg
gaggacgagaaaaagagcggaggaggaaactcaggtggggactcaggttgggggagctgg
gatgaaggggctcctcggagaacctggggagctgggggcacagggggagggaacggagga
gggatgggggtcagcggcggtggtggaatgggggggtccaaaccccatcaaagttggagt
ggaggaaacaaaatgcaccagatgccaaacagccagccgggccccgtcccgcaggcacaa
ctgcagcagcaacaatcacaacaatcacagccccgcaatcagcatccgcagagagcgatg
gaccaaggggccatgcaagggggtgggggcgggggcgggggtgggaaaaaacccatctcc
caagccccgaatcagaaccaaagctcaggctggacctcggggccaatccctgccggcgcc
ggaggaggaggaggtgccggaggaaatagtggaggaggaggaggaggaaatggtggagga
aatggaggagggaatggtggaaatggaggaggagttggaggtgaatctgagcccagcggc
tgggaagagccgtcacctcagtccattagcaggaagaacgagatcgacgatggaacatca
gcatggggagacccgacgcattacagctacaagcccgtcaacctgtgggataaaaacgca
gccgccgccgccggacagcagcagccgccgccgccgccgcatgaccagcagcctcatgtt
caggctcaacagcaacaacaacagcagcagcagcaacaacaacaacaacaacaacaacaa
caacaacagcagcaacaacaacagcagcaacaacaacagcagcaacaacaacagcagcaa
caacagcaacaggagagacaacaacaacaacagcagcagcagcaacaggcaccgccaata
cagcatccgcctgcaagacaagctgcagggatcggaggtaacagagactttaaccctggc
catggacctgcaaaaacttcagctattggtccgtcaggttgggggggtaattctccagct
agtcctacagcagacaacggcacgatagcgtggggaaaaactaatgaagctccttctggc
tggggagaacctgaagatgctggagggaagacatcgggctggggaaacccttctcccaac
ccaatcaaatctggttcaaagtctatgcaagatggctggggggataaagaggcctctgtg
gctgcgacacgtcactcgagctgggaggatgaggaggaggggggcggtggcggtggcggc
ggcatgtggaacagcgccggatcccagggcagcggctcctcttggggccagggaagcaac
gggggctgggggcagagccaccaagagaagaagcccagcagcaagggtccaatgaagcct
ggtggaggagactcctggatgagtcccatcaacagacagttctccaacatggggcttctg
aacgatgatcccagtggccagaacaacaacatggatctggctccaggttccctccaagag
aagaagatggaagcggagaaaagagccatgggaatgaatatgaacgattacaacggagac
atgaggaaggttggcagaggaggaggagggatgggttatcgtccacctggatccaaagag
gcagcacctggagatgctggatcgtactatgacaagaccttgcctttgaccaatcaggat
tggtgtcttggggaggagggtccttgctctctgtactcaccacccactgtctacaagtcc
cattccctcttcaaccacactattccctttagacaaggcggtcacaatatctttggcaac
agcggagggatggctcagtcaagacacccgccaagtgtcccacccttaaaccagtcccca
gggatacgagcgcaagtgcctcatcagttcctgtcacctcaggtgccaggctccgtgctg
aagcagatgccgcctcccaccggcagcgtgggtggtgttggcggcgtgggaggagtgggg
ggggtcgggggaggtgtgttccctccacagctgtccccccagcatattgccatgctcagc
agcatctaccctccgcacatccagttccagctggcctgtcagctcctcctccagcagcag
cctcaacagcagcaacagcagctgctgcagaaccagaggaagttcccaccaaatgtgcgg
cagcaggctgaccctcaacagctggcccggatcatggcggtgttgcagcagcagaggcag
cagcagcagcaggccggaggtttaggcagcagctccaaactctccccatcccatcacggt
ggggttggcggtcccaaactgcccggggccgactccctgcctcatcctggcctcgctgca
tccgtggctgacctgcaccagaaaaacctcggcccttattccgggtttggttctggggtg
aacctcccgggtctggacatgggcggctcctctgtggggggtccggggggcatgaaggac
ctcgggatccagcagtcacgcttcaaatggatgatggagggccactcgtccccggacacc
tcctcccctgagaacgcattccacaaaaacggtcccgtcactcctatgaagatgccgggg
ggctctccctactctcagtacgatatgatggttggagacgggctgggagacaactggcat
cgcacccctggcaacaagatgggcccaaagcccccccccacgcccagctggccccctgag
tttcagccgggtgttccctggaaagggatcgaccgggtcgaccctgactctgacccctac
atgaccccagggagcatgatgggaaatgcagtgtcccccaacctcaatgatagtgagcac
cagttgttacaagacaatactgattccacccctcccctcaacaccttgctgccttcacct
ggtgcctggccctacagtgcctcagacagtcccctcaacaacgcacacaactcagcaaag
tacacagactacaagaccagctggcccccagagcccatcggacacaagtcctggaaagct
aaccgtggcagcagccagatgtcccaaatgtcccaaatgtcacagatgtcccagatgtcc
cgcatacctccaggcctcgccagccaaaagcagccatcgccttccccctggtccggagga
gctcctcgcctggcgggccgcggctggggcggcagctcgagttccactgcctcaacctgg
agtgacggcagctcccgtgaaagctgctggttggtgctcagcaacctcacaccgcagatt
gacggctccactctgcggaccatctgcatgcagcacggccctctgctgacctttcacctc
ggcctgacgcagggcaccgctctgattcgctacggctccaaacaggaggcggccaaggcc
cagagcgcactccacatgtgtgttctgggtaacaccaccatcttggcggagtttgtgagc
gaggaggacgtggctcgctacattgcacattcccaggcaggaggaggaggaggagcaggg
agcggaggaggaggaaaccccgccaactcttcaggctccgggcccacatcctcctcctcc
tccgctgtgggggccaacggtaacggaggaagctgcgatagaagtggaggaggaggtaat
aatggaggagaaggaggaggaggaggaacagcaggaaatggaggcggggcttccagctcc
gggtggcagagtctggacagcacaggcagctcttcggaccagacctccacccaggggccc
ggtttgggggtctactcccagtggagcagcaacgggaccgtggtggggggggctggaggc
gtggaggccgggcggcagggtctgtggggggggatgagcgggccggggtaccccagcacc
agtctctgggggacccccgccctggaggatcggcaccagatgggcagccccgcttccctg
ctgccgggggacctgctgggaggggggggccgactgacacatttttaa
DBGET
integrated database retrieval system
