Trematomus bernacchii (emerald rockcod): 117473497
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Entry
117473497 CDS
T09643
Symbol
tpra
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoprotein TPR
KO
K09291
nucleoprotein TPR
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117473497 (tpra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117473497 (tpra)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117473497 (tpra)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Motif
Other DBs
NCBI-GeneID:
117473497
NCBI-ProteinID:
XP_033974989
LinkDB
All DBs
Position
Unknown
AA seq
2495 aa
AA seq
DB search
MAAVLLQVLERTELNKLPKGAQNKLEKFVTELQNANEALRTQHERFKADSEQQYFDLEKR
LAESQEQILSATRDLQTLVEEKKKLNEELSTLKGIEAEAPEDKTPQQQTKAKYEIEAEKR
ELARLLEKRTQEVENLSEDVKRLNEKLTETSKVKMELQLKLDNIQSSEASVQHRETRMEQ
EKELHEKNISWLTEQLKTKTEELLNTNREKGKEILELQGGLKNTKEQVTRLERQLTSLKQ
TRESQSKRADDLNNKLKQSKDEQSAMEQKYRSELNAHMKLSSLYKGSAADTEAKNQELSR
AVEELSKLVKDSGEANKALEKKVSEGEEVKTRLEAELSEKLKKMEKELENATMKAAGKHC
CVPSLTDEQLEAMCPSAANIAAIVKPGMKFFDLYNAYAECQTHLQLEKQETCRVNRVLDE
IIMEVESKAPVLKRQREEYESMQRSMASLCYKLEQARKEIYSLQKEKEEAKQRCDSIERE
KQRIDRQLEDTSTQVCTLLVQLEEARGNEVTKDDGSSSNFSSPSEVTSPLSFRSVEELQK
QNQSLLGRLRELEEEKDLQKSQATSARVSELEASVDKLLKEVEQLREQRNQQKQLADSNA
RQRDMYKALLTQSTGFSLPPQGLDSPSQPAPVRPSVPATRSTPQRVAAAESAQTAQTKAA
LKQLNDAFTLYKKEKAENDRLLNETNDRLQKQLTDLRSSHAKLTSQIEFSSKRYEMLQDT
VSAQRREISALQDRNQKMAATAQRHEQIIHTMSQDLRQANEKLALEEVRVENLTKEKDML
RQAESRLNREKESILVEQRNQNLLLTNLKTIQLTMERTETETRQRLNNKVEHLEAELAAM
KTKQDQEVAQRHALGRTMDAQLLEAKKQLETQNTLQQKTRELLRSSEQQVAALRAQLAAA
AAAAAPSSEAAPPSSSTPTTPATRAAGLRAPLRVRSPVPAASQQLSQSEQELAEAMGLLR
TAEERNRELTEQLENANARVEQYRAVVLTLEDSLKKEKESRSPLELRLKESDEVQKQLEK
TILEAEKMKQQEREERRKAVDAVEKQLCEVQRCLKSSQTEQQEALERAAAAVTKEQRAIQ
ESLLQTKLAGEAQAKYERELMLHAADVEALQELKKRSQQDGARKRELEEQLNKTSSLLQQ
KTAALNSVERQLKEDLSNQRRRCEELGKQNALLHQQMGEMATRSRGLQTPRQQLDLSFSE
EGKTTEQILEILRFVRRDKEIAMAQCEASDEEAQRYKQRVEHQDRELKELQEALNSEREK
MQVTAKTLAQQEEQLKKMETISALQETVRMLNAEKDKLEQEMQQAQAKVKKLQSDISPLH
QSLSLLSEKNGSMQADKRILEEDLKRWKAKTQVTNPQQKDGDVEERQKLSTEREAQQRRI
TQLAEETAKLKTELARSSASGNSAQSQLQAFRDSVARLTSERDTLKKDLETKNSDILERN
RTITQVXKIGRRYKTQYEELKAQHDKMVGETAVKAGSEAGPSQEVQELTKAQEELNKARE
ELSTLKEEAQKKVEEDQKGQQELEEAKKENQQTKDKFQEVQNQLTQKQNQLTQVQSQLSQ
IQTQQQQNQNQLTQSQKELQQAKTHSQQFQNQLKAAQSQSQARQNQIQQIQRELQQAKEA
LQQNLVNQKELQQTNQSSQQSHNQEVSNLKTALSQSECKVTEIQGRLDSLQKMVEEREAD
IKRLQEQLTEANKANRATQAFQNQSSQSIQASDANVASDANHAQQEELAKLRQEMSESKA
REEQLKKQIAEKEEKTKKVFMGAKTKINQLNSAKVQLSKEIEEMKQSKEELEVRMNALKS
QYEGRLLRLDRELRELRGTQAQSDPREEPQDQSGAKAGDQARPADQRQISLKSPAQDRGS
SSLSDPPTANIRPTTSTPSPSNKPSPSQGSKSTPRASIRPMVTPATVSVPTPTATVMPTT
QTDSQEVLMGAGATVHSTSSSLVNTPTSMTQPTSTQATAFVQPTQQQAANQDAGPSMDAE
RPSTSSFLSGTAGSKRSIEDEDGEEENTYPTLKKTKIALQMEGDEEIVEELQDEEKRQDS
PDDSQELPDDCFPVLAEDDEDVERVSQSVPSDMMSPQGSTIIRDVIVIDTDSESRESREG
EEKHDDEEEEDEEEEEEEDDGYKEEEDDDEDDEAGESGMRGGEEGSESREAEEEEGEPSE
VCGASSDSQQPSHSNEGSSSATSESEPPREPVHFPPTSSTPSPSSLTPRLPHPRRPPHPL
PPRLYIQPPVQELGPPHTQRQSSQLRRPSVGRGPQLTPGIGSMQHFFDDDDRMVPSTPTL
VVPHRTDGFAEAIHSPQVTGLSTRFRFGPPEDLLPQTSASHSDLGQLASQGGLGMYESPL
FLAAHDEDGGGRSVPTTPLQVAAPVTVFTESLPSDSGDNMASQSVPMVTTSTGMASAADD
GDEVFMEQEGEGAGIESSLDSQTDLESAGQQSDDASLPSTSQEPDTSSAAQRRTVSGVMS
RGTRGGRMEARTLLSRRGTFFRGGRGGAMGRGGLA
NT seq
7488 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtcctgctgcaggttctggagcggacagagctgaataaactcccgaaagga
gcccagaacaagctcgagaagtttgttacagagctgcagaatgctaacgaggcgctcagg
acgcagcacgagcgcttcaaagcagacagcgaacagcagtactttgaccttgagaagaga
ctggctgagagtcaggagcagatcctgtctgccaccagagacctgcagacactcgtggag
gaaaaaaaaaaactcaatgaagagctgagcactctgaagggaattgaggcagaggcccct
gaagataaaacaccacaacagcaaaccaaggccaagtatgagattgaggcggagaagaga
gagctggcgaggctgctggagaagagaacacaggaggtggaaaacctctctgaggatgtg
aagcgtctgaatgagaagctgacagagaccagtaaggtgaagatggagctgcagctaaaa
ctggacaatatacagtcatctgaagcttctgtacagcaccgagagacgcgtatggagcag
gagaaagagttgcacgagaagaacatctcgtggttaacagaacagctgaagaccaaaact
gaagagctgctgaacaccaacagagagaaaggcaaagagatactggaactgcagggaggt
ctgaagaacaccaaggagcaggtgaccagactggaaagacagctgacctctctgaagcag
accagggaaagccagagtaaaagagctgacgatctgaacaacaaactgaagcagtctaaa
gacgagcagagtgccatggagcagaaataccgcagtgaactcaacgctcacatgaagctg
tcttctctttacaaggggtcagcggcagacacggaggcaaagaatcaggaactgagcaga
gctgtggaggagctcagcaagctggtcaaagacagcggggaagccaataaggctctagag
aagaaggtgtctgagggagaagaagtgaagacgcggcttgaggcagagctcagtgagaag
ctcaagaaaatggagaaagagctggaaaacgccacgatgaaggccgctggcaaacactgc
tgtgtgccctctctgactgacgagcagctggaagccatgtgtccgtcagctgccaacatc
gctgccatcgtcaagcccggcatgaagttctttgatctgtataatgcgtatgcagagtgt
cagacacacctccagctggagaagcaggagacctgcagagtgaacagagttctggacgag
atcatcatggaggtggagtccaaggctccagtcctgaagcgtcagagggaggagtacgag
agcatgcagaggtccatggcttcactgtgctacaagctggagcaggcccggaaggagatc
tacagtttgcagaaagagaaagaggaggccaagcagcgctgtgattccatagagagagag
aaacagaggatagataggcagcttgaggatacatctacacaggtgtgtactcttctggtg
cagctggaggaagctaggggtaacgaggtgaccaaggacgacggcagctcctctaacttc
tccagcccctcggaggtcaccagtccgctgtccttccgcagcgtggaggagctgcagaag
cagaaccaaagcctgctgggaaggctgagggagctggaggaggagaaggacctccagaag
agccaagccacatcagcgcgtgtgtccgagttggaggcgagtgtggataagcttctgaag
gaggtggagcagctaagggagcagaggaaccagcagaaacagctggctgactccaacgcc
cggcagagggacatgtacaaggccctgctgactcagagcaccggcttcagcctgcccccc
caaggtctggattctccttctcaacctgcacctgttaggccgtcagttcctgctactcgc
tctactcctcagagagttgctgctgctgagtcagcacagactgctcagactaaagctgcc
ttaaaacagctgaatgacgccttcactctgtataagaaggagaaggcagagaacgacagg
ttgctgaatgaaaccaacgaccggctgcagaagcagctcactgatctccgctccagccac
gccaaactcacctctcaaattgagttcagcagcaagaggtacgagatgctccaggacacc
gtgtcagcccaacgcagagagatctccgctctacaggacaggaaccaaaagatggctgcc
actgcccaacggcacgagcaaatcatccacaccatgagccaggacctgcggcaggctaac
gagaaactggcgctggaagaggtgcgtgtcgagaacttgacgaaagagaaagacatgttg
agacaagcagagagtcgactcaatagagagaaggaatctattctggtggagcaacgcaac
cagaacctgctgctgaccaacctgaagaccatacagttgacgatggagcgtacagagaca
gagactcgccagagactgaacaacaaggtggagcatttggaggcagaactggctgcaatg
aagaccaagcaggaccaggaagtagcacagagacacgccctggggcgcaccatggacgct
cagttattagaggctaaaaagcagctggagacccagaacaccttgcagcagaagaccagg
gagttgttgcgcagctctgagcagcaggtggcagcactgagagctcagctggctgctgct
gctgctgctgctgctccatcctctgaggctgcccccccctccagcagcacccccaccacc
ccagctaccagagctgcaggcctcagagctccactcagagtgcgctctccagtgccagca
gcctcgcagcagctcagccaatcagagcaggagcttgcagaggcgatgggtctcctgcgt
actgcagaggaacggaacagagaactaacagagcagctggagaatgcaaatgctagggtt
gagcagtacagggccgtggtgctgactctggaggacagtctgaagaaagaaaaggagtct
cgctcccctctggagctccggctgaaggagtctgacgaggttcagaagcagctggagaaa
accatcttggaggctgagaagatgaagcagcaggagagagaagagaggagaaaggctgtg
gatgctgtggagaaacaactgtgtgaggtgcagcgctgcctgaagtccagccagacggag
cagcaggaggcgctggagagagctgctgctgctgtcactaaggagcagagagccatacag
gagagcctgctgcagactaagctagctggagaggcgcaggctaagtatgagagggagctc
atgcttcatgctgcggacgtggaggccctgcaggagctgaagaaaagatcccagcaggat
ggagcacggaagagagagctggaggagcagctgaacaagacctcgtccctcctgcagcag
aaaactgcagctctgaactcagtggagaggcagctcaaggaggatctgtccaatcagagg
cgtcgctgtgaggagttggggaagcagaacgccctcctgcaccagcagatgggtgagatg
gccaccaggagtcgtgggctgcagaccccccggcagcagctcgacctgtccttcagtgag
gaggggaagaccaccgagcagatcctggaaatactcaggtttgttcggcgtgataaagag
atcgctatggctcagtgtgaggcgtctgatgaagaagctcagcgctataaacagcgagtg
gaacaccaggacagagaactgaaggagctgcaggaggctctgaactctgagagggagaag
atgcaggttacagccaagactctggcccagcaggaggagcagctgaagaagatggagacc
atcagtgctctccaggaaaccgtcaggatgctgaacgcagagaaggacaaactggaacaa
gagatgcagcaggcgcaggctaaagttaagaagctgcagtcagacatcagcccgctgcac
cagtctctgtctctgctgtcggagaagaacggctccatgcaggccgacaagaggatcctg
gaggaggacctcaaacgctggaaggccaaaacccaggtaactaatccacagcagaaagac
ggggacgtggaggagagacagaaactgtccactgagagagaagctcagcagagacgcatc
acacagctcgctgaggagacggccaagctgaagactgaactcgcaagatccagcgccagc
gggaactcggctcagtctcagctgcaggccttcagagactcggtggcccgtctgacgtca
gagagagacactctgaagaaagacctggagacgaagaacagtgacatcctggagaggaac
cggaccatcactcaggtcnagaagattggacggcgctacaagacgcagtatgaggagctg
aaagcccagcatgacaagatggttggggaaactgctgttaaagcaggaagtgaggcgggt
ccgagccaggaagtgcaggagctgactaaagcccaggaggagctcaacaaggccagagag
gagctgagcacactgaaagaggaggcgcagaaaaaagtggaggaggaccagaagggccag
caggagctggaggaagccaagaaggagaaccagcagaccaaggataagttccaggaggtc
caaaaccagctgacccagaaacagaaccagcttacacaggtccagtcccagttgtcccag
atccagactcaacagcagcagaatcagaaccagctgacccagagtcagaaagagcttcag
caagccaagacccacagccagcagttccagaaccagttgaaagcagctcagtctcagtct
caggcccggcagaaccagattcagcagatccagagggagctccagcaggctaaagaggcc
cttcagcagaacctggttaatcagaaggagctacagcagaccaatcagagcagtcaacag
agccacaaccaggaagtcagcaacctcaagactgctctcagccaatcagagtgcaaggtg
actgagattcagggccgcctggacagcctgcagaagatggttgaagagcgtgaagccgac
atcaagcgtctgcaggagcagctaactgaagctaacaaagctaaccgagcaacgcaggcc
ttccagaaccagagttcccagtccatccaggccagtgatgctaacgttgcttctgacgct
aaccatgcccaacaagaggagcttgcaaaactcagacaagagatgtctgaaagcaaggcc
agagaggagcagctcaaaaagcagatagctgaaaaagaggaaaagactaaaaaggtcttc
atgggagccaagaccaaaatcaaccaactaaacagtgctaaggtgcagctcagtaaggag
atagaggagatgaaacagagtaaggaggagctggaggtgaggatgaacgccctcaagtct
cagtatgaaggacgacttctgcggctggacagagagctgagagaactgagagggacacag
gcacagtcggacccccgagaggagccccaggaccagagtggagctaaggcgggggatcag
gccagacctgcagaccagagacagatctctctgaagagtcctgctcaagaccggggaagc
tccagcctgtccgacccccccactgccaacatccgccccaccacaagtactccatctcct
agcaacaagccaagcccctcccaaggtagcaagtccacacctcgtgccagcatccggcca
atggttaccccagcaactgtgtccgtcccaacacctaccgccactgtcatgccgaccaca
cagactgacagtcaagaggtgctgatgggtgcaggagccactgtgcactccaccagctcc
agtctggtgaacacacccacttcaatgactcagccaaccagcacccaggccacagctttt
gtccagcccacccagcagcaggcagccaatcaggacgcaggccccagtatggatgcagag
agaccatctacgtcctcttttctgagtggaacagcaggttcaaagcgaagcatagaggat
gaggacggggaagaggagaacacgtatccgaccttgaaaaaaacaaagatagcactgcag
atggaaggtgatgaggagattgtagaagagctgcaggacgaggaaaagcgtcaggattca
cctgatgacagtcaggagcttccggacgattgtttccccgttctagctgaagatgacgag
gatgtggagagagtgtcccagtccgtcccctctgacatgatgtcccctcagggctccact
attatccgggacgtcatcgtgatcgacacggacagcgagagccgtgagagtagagagggg
gaggagaagcatgatgacgaggaggaggaagatgaggaggaagaggaggaagaagatgac
gggtataaggaggaagaggatgatgatgaagatgatgaggctggtgagagcgggatgaga
ggaggagaggaaggcagtgagagcagggaggcagaggaggaggaaggagagccgtcagaa
gtgtgtggagcgtcttcagactcgcagcagccgtcccacagcaatgaaggcagcagcagc
gccacatcggagtccgagcccccccgagagcctgtgcacttccccccaacctcctctaca
ccctccccctcctccctcaccccccgcctgccacacccacgcaggccccctcaccccctc
ccaccaagactctatatccaacccccggttcaagagctgggacccccacacacacagaga
cagtcctctcagctgcgcagaccctcagtgggacgcggacctcagctcaccccgggaata
ggcagcatgcaacatttctttgatgatgacgacaggatggttcccagtactcccaccctg
gtggtcccacaccgcaccgatggctttgctgaggccatacactctcctcaggtgacgggt
ctgtccaccaggttcaggttcggacccccagaagacctgctgcctcagacctcagcctcg
cactctgacctgggacagctggcctcgcaaggaggtctggggatgtacgagtcccctctg
ttcctggctgctcacgatgaagacggaggagggaggagcgttcccaccacccccctgcag
gtggctgcaccagtgaccgtcttcacggagtctctgccctcagacagtggtgacaacatg
gcatcccagtcggttcccatggtaaccacctccactgggatggcgtctgctgcagatgat
ggggacgaagtgttcatggagcaggagggagagggtgctggtattgaatcttctctggac
agccagacagacctggagtcagcaggtcagcagagtgatgatgcttcactgccctctacc
agccaggagcctgacaccagcagtgcagctcagcggcgcacagtaagtggtgtgatgagc
agaggaaccaggggggggaggatggaggcgcgcacgctgctcagccgcagaggcactttc
tttcgaggaggaaggggaggggccatgggcagagggggcttggcctga
DBGET
integrated database retrieval system
