Trematomus bernacchii (emerald rockcod): 117473546
Help
Entry
117473546 CDS
T09643
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117473546 (jmjd1cb)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117473546 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
zf-C5HC2
FYVE
Motif
Other DBs
NCBI-GeneID:
117473546
NCBI-ProteinID:
XP_033975060
LinkDB
All DBs
Position
Unknown
AA seq
2873 aa
AA seq
DB search
MAVEARPELVGKRFLCVSGEEPPEIGDTGRWPWRSGVIRAVNHRDNDSLDLTVYVEFDDQ
EWEKREWVKVYEDFQLFLLEHQLVWAKRKEGTGSGAGGLQGPKAKHIQWPALAFKPVVGK
SLLSSFTAVEFLLDRQLDFLSDLSAFQPYQDEVDSLNPVLRDNHQLHDEVRGWLKDQKVQ
EIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRNMVVMNDQVLEPQNVDPSMIQ
MTFLDDVVHSLLKGENIGITSRRRSRSSTNNNNAHMTGGRPSGTTGSTQSHYTRAQANSP
RPIMISSGPNAKGSQGTQASQQQSQSQQSQQTASQSHNSPGGNAREQREQRNARSSRRKG
SDSSVPEEDKREEPPARESKKAKQAVNKRRKGEEEEKKASLKRLKTDITSDLSESSDSEN
PLNKRAALSSCSSSSSSSSSSSSSSSSSSSEPNSENELKTRSSDVKQSAVSKKEEEEKPL
MPANKMNESSSLIGRLSPWAELQEDTKKGVVKETSKITTKEEEELVAVTQITQSPRQQTP
VMPDSLQAGSMESSKNTVKASSQSQTPAVSQPGGGGAVTDITEEAQATVHQESSEAVSAL
LASQNAESTALSPYLPLNPSPVSSPPVPPSPSPSEGGRKAETEPSAQQQQHGLTGGGTTA
ARSSGNKMEFAPSEVIRPVTSMVENVLLVEKEKPVLPHHLQHQQQQQQQQQQQQHTQQKQ
HYTSVHPSINSPSLSEETRKPPQQHPPPNKINAAIPPDFKSKTSPNPAQLDSLKQKPQHP
NNSQSHPYPNTTPAEPLKAKPHPGLLDISKPKPNTSPEVSKHKIQRYSGPSPPPIGRLSA
KVEPAEPPRSCFKPVPVRLESGGVSSTKSPFIIDKNETFTVYRDPALVRSAAENSVSVSI
SSNHVAAYLHPHLHTLHSPSPHSPCLTSASHPHTSHLLAPPHTSALPHPHLLPPGVLPAM
PPPTASLLGGHPRLDSPSGLGHLGLPHPAAVHQQQFLQAQGPPLLAQAHSGAAGLGLYPI
LWQYPNGTPSSYPPGLNLPPTAKWVHPDNPVNSEVSLRRNTASPWLHQAGGGADGLGLLS
HVPVRPASADPHRPSVKMNTHASPPLSKASMNAHKEEMDKKGFVDPIRTLTLAQLKQEQS
DRSRTPTGKEVHLHRLYMDPHSKARMDAVQAADRASKYKEENRQILKESIEVAPYTAKIQ
RSSDPGMDRDRERSRDPAFPVRVPALSSPNPKAGHIHPHVIQSEKSNYFTTLSNSVVNEP
PRLYSSKELSSYYENVSSGAPGVVASVGAAVPSQGALSLGSYSSKASLSKPPPLIKHQPE
GGEGLAGKINEQLSQQVTLVQQQHQHHAGLDRMERHSPAISPSSSTSSSLAPNHHHPHHH
LHHQQHQQQQQHQQQQQQLRAMPSLHRAPVFHPPTQHALERKEAAEREREREKERERERD
RASYGGRLSPPTLTPIQPVSLAAAGSKTLAEQQKPPTLLPELRDTKGHGNAAVVTSVAAA
ISGDVMTSSADAWRERGGSFSGEKGMSRGKPQSAMASVIVRPSTSIKYDIPVGANKSGAM
IPKELPQGRFYSSKLQGECLRRGEGFRDVGRIIQPNSNLDDMCVQYNNTSMRSMHGMMGA
SMSNSVCRTISPAFGIQSMSGTALPELGYSSSAHISSHKTGIGGWVLSHSGPGEYHEVLR
TTSPGGSLPPPSPAGTPQPSPSITPTPSSVSGSSQPYSPSFVHLKKHKAALAAAQSRTNF
SSAPTAITTGNCFLPVDSADKTPIQNSPPLPSSSQASTSSVDSSSNSSVGGSTTTGKSSP
LPNGQSSVSSSVQPSNYHKLKKAWLTRHSEEDRNTTANTTPPSVKPEKVPTTTTSTSNTA
AMSDMIKPCTVNLSASTSSEVEMSKDSVIKAERERQQEEKVGGAEGGGGEERKVPPSLRR
GNKRTYESASESGGDDSDASESKMEGRAKRQPKPTYKKKQNDMAKKKGDNEKEEDDLKPN
GIFRSAREKTKLKLASSNGIPRSVLKDWRKVKKLKQTGESFLQDDSCAEIGPNLQKCREC
RVIRSKKGEEPAHSPVFCRFYYFRRLSFSKNGVLRMDGFSNPEQFDDEALSLWVPGLEDT
QLDQNTAKYILSFIGDKFCQMVVTENTAATWVKKDAKVVWKRAVRGVREMCDACEATLFN
IHWVCQKCGFVVCLDCYKAKERRSSKDKELYGWLKCVKGQPHDHKHLMPTQIIPGTVLAD
LVSSMHSLREKHNIKSHCPCSTKQNLLTKLPATNGVSQVLQNVLNHSNKLSVLKTELGSQ
QNSDQGGTKVETNGGGGGSSPNSDAGSAPVTPPESQSPLHFLADLAEQKSREEKKENKSV
VLGKSVKEDKVGDSLEVLQQCKTTSLVANSTEQGSTLRDLLTTTAGKLKMGSTDAGIAFA
PVYCNAAQHGKGGRTMPNILDEIIASVVENKIPANRQNIASKLSSIKHEPVTPSNNNNNP
TPAITEDVKPDRKKTAVPAAVPEESTNQYPDIPHCWLNNRRLLWLKDHRNHNNWKLFREC
WRQGQPVLVSGIHKRLNSALWKADSFNQEFADHQGDLLNCKDQVVSNSGIKEFWDGFEDI
TKRPKSKDGEPMVYRLKDWPSGEEFMALMPSRYDDLMKNLPLPEYSDPEGNLNLASHLPS
FFVRPDLGPRLCCAYGVAASQDQDFGTANLHVEVSDVVSVLVYVGVAKGNGVLSKTGVLK
RLEEEDLDEGVRRRLKDSSETPGALWHIYLNNDMEKVREFLRKEQSLDGAPEQDPIREQG
LYLSRKHRQRLLEEQGVQGWTVVQFLGDSVLIPAGAMHQVQNLHSCVQVINDFVSPEHVA
NSFHLSQELRPNNEEVNYEDKLQVKNILFHCVKEAVSSLKRSSSEEDEEEQNS
NT seq
8622 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcgaggctcggccggagctggtcgggaagcggttcctctgtgtcagcggggaa
gagccgcctgaaatcggcgacacaggtcggtggccgtggaggtccggtgtcatacgagcc
gttaaccaccgtgacaacgacagtctggacctgacggtttatgtggagtttgatgaccag
gagtgggagaagagagagtgggtgaaggtctatgaggatttccagctgtttctactggag
caccagctggtctgggccaagaggaaggagggaacaggaagcggagcagggggcctgcag
ggacccaaggccaaacacatacagtggcctgccctggcatttaagccagtggtggggaag
agcctgctgtcctcattcacagcggtggaattcttgttagaccgacagctcgacttcctg
tctgacctttcagccttccaaccataccaggatgaggtggacagtctgaacccagtgcta
agagacaaccatcagctccatgacgaagtgagaggctggctcaaagaccagaaggtgcag
gagatttttatgcaaggtccctactctctgaatggataccgtgtgcgggtgtacagacaa
gactcggccacccagtggttcactggcatcattacacaccacgacctcttcagtcgaaac
atggtcgttatgaatgaccaggtgctagagcctcagaacgtggatccctctatgatccag
atgacctttctggatgatgtggtccactccctactgaaaggagaaaacatcggtatcacc
tccagaagaaggtcacgatccagcaccaacaacaacaatgcccatatgacgggtgggaga
cccagcgggaccaccggcagcactcagagccattacacacgagcccaggccaacagcccc
cgtcccatcatgatctcatcaggccccaacgcgaaaggttcccaggggacccaggcctcg
cagcagcagagccagtcacaacaaagccagcaaacagccagccaatcacacaactcgccc
ggcggcaatgcgagggagcagagagagcagcgcaacgcccgctcctccaggaggaaagga
tcggacagcagcgttccagaggaggacaagagagaggagcccccagccagagagtccaaa
aaggctaagcaggcagtaaacaaacgcaggaagggcgaggaagaggagaagaaggccagt
ctaaagaggctgaagacggacataacctcggacctatcagagagcagtgactcagagaac
ccactcaacaagagggctgccctctcctcgtgctcttcttcgtcctcatcgtcctcctca
tcctcctcatcttcctcttcctcctcctcagagcccaactctgagaacgagctaaagact
cgcagcagtgatgtgaaacaaagcgctgtttccaaaaaggaggaagaggagaagccgctg
atgccggccaacaaaatgaatgaatcctcgtctctcattggtcgcctttccccgtgggcg
gagcttcaggaggacactaagaagggcgtggttaaggaaacgagcaaaattacaacaaag
gaggaggaggagttggtcgcggtaacacagatcacccagtctccacggcaacaaacgcct
gtgatgcctgacagtcttcaggcaggcagtatggagagcagcaagaacactgtgaaagcg
tcctctcagtcccagacgccggcggtgtcccagcccggcggcggcggcgctgtgaccgac
atcacagaagaggctcaggccacggtgcaccaggagagctccgaggcggtgtcagcgctg
ctcgcctcacagaatgcagagtccacggcactctcaccttacctccccctcaacccctcc
cctgtgtcctcgcctcccgtccctccgtctccttcgccttcagaaggaggccgcaaggca
gagactgagccttccgcacagcagcagcagcatggccttacaggaggcggcacgacagca
gcccggagctcaggaaacaagatggagtttgctccctctgaggtcatcaggcctgtcaca
tcgatggttgaaaatgtgttgctagtggagaaggagaaacctgtccttcctcatcatctt
cagcatcagcaacagcagcagcagcagcaacagcagcaacagcacacacaacagaagcaa
cactacacatctgtccaccccagcattaatagcccttctctgtctgaggagacgagaaaa
cccccccagcagcacccaccccccaacaagatcaatgcagccatccctcctgacttcaaa
tccaaaaccagccccaacccagcgcaactcgactccctgaaacagaaaccccagcacccc
aacaactctcagagccatccctacccaaacacaaccccagctgagcctctcaaagctaag
ccccacccgggcctgctggacatctccaaacccaaacccaacacctccccagaggtctcc
aaacataaaatacagcgatactctggcccctcccctccgccgataggtcgtttgtcagct
aaagtagaaccagcagaacctccgcggtcctgcttcaagccagtgccggtgcggttggag
tctggtggggtcagcagcacgaagagccccttcatcatcgataagaacgagacgttcacg
gtttacagagaccccgccctggtgcgttcagccgcagagaactctgtctctgtcagcatc
tcctccaaccacgtggcagcttatctccacccccacctgcacactcttcactccccttcc
cctcactccccctgcctcacctccgcatcgcacccccatacctcccatctccttgcccct
cctcacacctctgccctacctcacccgcaccttttaccccccggggttctccccgccatg
cctccgcccacagcctctcttctcgggggccacccacgtcttgactcccccagcgggttg
ggtcaccttggtctgcctcacccagccgccgtacaccagcagcagttcctacaggctcag
ggcccccctctactagcccaggcccacagcggggccgcagggctgggcctctaccccatc
ctctggcagtaccccaacggaacaccttcttcctaccccccagggctcaacctgcccccc
acagccaagtgggtccaccctgacaatcctgtgaattcggaagtgtctctcaggaggaat
acagccagtccgtggctgcaccaggctggggggggggctgatggtctgggtcttctgagc
cacgttcctgtacggcctgccagtgccgatccccaccgcccctccgtcaagatgaacaca
cacgccagccctccactgtcaaaggccagcatgaacgcacataaagaggagatggataag
aaaggctttgtggacccgatcaggacgctgacactggcccagctgaagcaggagcagtca
gacaggagtcgcacccccacagggaaagaagtccacctgcaccgcctctacatggacccc
cacagcaaggcccgcatggatgcggttcaggcagcagatcgagccagtaaatacaaagag
gagaatcggcagatcctgaaggagagcatcgaggtggctccctacacggctaagatccag
cgctcaagtgacccgggcatggaccgggaccgagagaggagcagagacccagccttccct
gtccgagtccccgcactctcctccccaaaccccaaggcgggccacatccatccccacgtt
atccaatcagaaaagagcaactacttcaccacgctgtccaacagtgtagtgaatgagcct
cccagactctactcctccaaggagctcagctcttactatgagaacgtttctagcggagct
ccaggagtcgtggccagcgttggagccgccgtgcccagccagggagctctgtccctgggc
agctacagctccaaagcctccctctccaagcccccgcctctcatcaagcaccagccagag
gggggggagggtttagcggggaagatcaatgagcagctcagccagcaggtgactctggtg
caacagcagcaccagcatcatgcaggtttagacaggatggagcgccacagccctgctatc
tctccttcctcctctacatcttcctccttagcaccaaaccaccaccatcctcaccaccac
cttcaccaccagcagcaccaacagcagcagcagcaccaacagcagcagcagcagctcagg
gcaatgccatctctccaccgagcgcccgtcttccacccgcccacacaacacgcactggaa
aggaaagaggctgcagagcgagagagggagcgggagaaggagagagagcgagagagggac
agagccagttacggtggacgcctgtctcccccaacactcacccccattcagccggtaagc
ttagcggcagctggcagcaagacgttggcggagcagcagaagccccccactctgctgccg
gaactcagggacaccaaaggtcacggaaacgctgccgtggtaacctctgtagctgcagcc
atcagcggggacgtcatgacttcctctgcagacgcgtggagagagagaggaggctccttc
tccggagagaaagggatgtcaaggggaaagccccaatctgcaatggcgtcagtcattgtg
cgtccatccacttctattaagtacgacattcctgttggtgctaacaaatctggtgctatg
atccctaaggagctcccccaggggaggttctactcatccaagcttcagggggagtgtctc
aggcgaggggaggggttcagagacgttggcaggatcatccaacccaactccaacctggac
gacatgtgtgtccagtataacaacacttctatgcgtagcatgcatggaatgatgggagct
agtatgtctaactctgtgtgcaggactatttctccagcctttggcatccagagtatgagt
ggcaccgccctccctgagctgggctactcctcatcagctcacatttcctcccataaaact
ggcattggtggctgggtgctgagtcactcaggaccaggagagtaccacgaagtgttacgc
actacatctccagggggctctctgccgccccctagtccagcagggacaccccagcccagt
cctagcatcaccccaacacctagctctgtttctggctcaagtcagccgtactccccctcc
tttgtccacctaaagaagcacaaagctgccctggctgcagcccaatccagaaccaacttc
tcctctgctcccacagccatcacaactggaaactgcttcctacctgtggactcagctgac
aaaactcctatacaaaactcccccccactaccctcctccagccaagcctcaacatcttcc
gtggacagcagtagcaacagctcggtgggcggtagcacaacgacaggcaagtccagcccc
ctgcccaacggccagagctcagtctcctccagtgtgcagcccagcaactaccacaagctg
aagaaagcctggctaacccgccactcagaggaggacaggaacacaactgctaacacaacc
ccccccagtgttaaaccagagaaagtgcccaccaccaccaccagcaccagtaacaccgca
gccatgtcagacatgatcaaaccttgtaccgtcaatctgagcgcctccacctccagcgag
gtggagatgagcaaagacagtgtgatcaaagctgagagagagaggcagcaggaggagaag
gtgggaggagcagaaggaggcggcggggaggagaggaaagtacctccctctttaaggcga
gggaacaagcgcacatacgagtcggcttcagagagtgggggagacgactccgatgccagc
gagagcaaaatggagggccgagccaagcgccagcccaaacccacctacaagaagaaacag
aacgacatggcgaagaagaaaggagacaatgagaaggaggaagacgacttgaagcctaac
ggcatcttcagatcagcccgagagaagactaaactcaagctggccagcagcaatgggatc
ccccgctccgtcctgaaggactggaggaaagtgaagaagctgaagcagacgggagagtct
tttcttcaggacgactcgtgtgctgaaattggacccaacctgcagaagtgtcgggagtgc
agggtgatccgcagcaagaagggggaggagcccgcacattcccccgtcttctgccgcttc
tactatttcagacggctgtccttcagtaaaaatggagtcctccggatggatggcttctcc
aacccggagcagtttgatgacgaggccctgtccctgtgggtccccgggctggaggacacc
caactggaccaaaacacagccaagtacatcctcagcttcataggagacaagttctgtcag
atggttgtgaccgagaacacagcagccacctgggtcaagaaagatgccaaggtggtgtgg
aagcgagctgtgaggggggtgagggagatgtgcgacgcctgcgaggcaacgctcttcaac
atccactgggtctgtcagaagtgtggcttcgttgtctgcttggactgttacaaggccaag
gagaggaggagctccaaagacaaagaactgtacggctggctcaagtgtgtgaaaggtcaa
ccccacgatcacaaacacctgatgccgacacagatcatccccggcacagtgctggcagat
ttggtgtcttccatgcactctctgagagaaaaacacaacatcaagtcccactgtccctgc
agcaccaagcagaacctgctcaccaaactgccagccactaacggagtctcacaggttctg
cagaacgtcctgaaccacagtaacaaactctctgtgctcaagactgagctgggctctcag
cagaactccgaccaaggagggacgaaggtggagactaacggagggggggggggaagcagt
ccaaacagcgatgcaggaagtgctcctgtcaccccgcccgagtcccagtcccctctgcac
ttcctggctgatctggccgagcagaagtccagggaggagaagaaagaaaacaagtctgtg
gtgctgggtaaatcagtgaaggaggacaaggtgggggacagcctggaggtgctgcagcag
tgtaagaccacctccctggtggccaacagtacggagcagggctccaccctcagagacctg
ctcaccaccacagcagggaagctgaagatgggctccacagacgctgggatcgccttcgca
ccagtctactgcaacgctgcacagcatggaaaaggtgggaggaccatgcctaacatcctt
gatgaaatcattgcttcagtggttgaaaataaaatcccggccaaccgccagaacatcgcc
agcaaactgtcaagcatcaagcatgagcctgtcacccctagcaacaacaacaacaacccc
acccctgctatcactgaggatgttaaaccagataggaagaagacagctgttcctgcggcg
gtgccagaagaatcaaccaatcagtatccagatattcctcactgctggttaaacaacagg
cggctgctgtggctcaaagatcaccgcaaccacaacaactggaagctgttcagagagtgc
tggagacaaggacagcctgtcctggtgtcagggatccacaagcgactgaacagcgccctg
tggaaagccgactccttcaaccaggagtttgctgaccatcagggagacctgctcaactgt
aaggaccaggtggtgtccaactctgggatcaaggagttctgggatggattcgaggacatc
accaagcggcccaagtcaaaggacggagagcccatggtgtacaggctgaaggactggccc
tctggagaggagttcatggccctcatgccctccagatatgatgacctgatgaagaatctg
cctctgccggagtactctgatccagagggcaacctgaacctggcctcccacctgccctct
ttctttgtccggcccgatctggggcccaggctctgctgtgcctacggcgtagctgcgtct
caggaccaggactttgggaccgctaacctccatgtggaagtctcagatgtggtctcagtt
ctggtctacgtgggagtcgctaaaggcaacggagtcctgtcaaaaactggagtgttgaag
cgtctggaggaggaggatctggatgaaggggtgcgcaggaggctcaaagactccagtgag
accccgggggctctgtggcatatctacctcaacaatgacatggaaaaagtgcgggagttc
ctgcgcaaggagcagagcctggacggggcccctgagcaggaccccatcagagagcagggc
ctgtacctgagcaggaagcacaggcagcggctgctggaggagcagggggtgcagggctgg
accgtggtgcagttcctgggagactctgtactcataccagcaggggccatgcaccaggtg
cagaacctccacagctgtgtgcaggtcatcaatgactttgtgtcccccgagcacgtggcc
aactccttccacctgagccaggagctgcggcccaacaacgaggaggtcaactacgaggac
aagctgcaggtgaagaacatcctgttccactgtgtgaaggaggcggtgagctccctgaag
aggagcagctctgaggaagacgaggaggagcagaactcatga
DBGET
integrated database retrieval system
