Trematomus bernacchii (emerald rockcod): 117473557
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Entry
117473557 CDS
T09643
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117473557 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117473557 (msh2)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117473557 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
117473557
NCBI-ProteinID:
XP_033975076
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MAVQPKHNLSMDSAAESGFLSFIFSMPEKPDTTFRIFDRNDFYTVHGKDAVFAAKEVFKT
NGVIKYLGSGSRKLESVCLSKMNFEAFVRDLLLVRQYRVEVYKNHSKSSKDWKLEYKASP
GNLTQFEEILFGGGTGAVGGAGVVAVRVATGADGQRVVGVGYVDAAQRTMGVCEFPDNEI
FSNLESLLVQIGPKECLLAQGDGNTDSSKLRQVVERGGVLVSERKRAEFSSKDTVQDLNR
LLRAKKGESVASSTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTSLDLGQYMRLD
NAAVRALNLFQGAPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLDMV
ESFVCDSELRQTCQEDLLRRFPDLNRLSKKFQRHSATLQDCYRVYQAVSHLPTLISALER
YSGSYEVLLEAVFLSPLRDLHSDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSELRE
KMDELEESMKVVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKTLRNNKKFSTLD
VQKNGVRFTNGKLSSLNEEYTKNREEYEGAQDAIVKEIINIASGYVDPLQTMSDVIAQLD
AVVSFAVASVSAPVPFVRPRLLADGCRRMELTQARHPCMETDADTAFIPNDITFTQGEKN
FYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKGVS
TFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKISCFCLFATH
FHELTALAAQQSTVHNLHVTALTSHNTLTMLYRIKHGVCDQSFGIHVAELACFPPSVVAM
AKEKAEELEEFQEPAGGKQEKGPEAKRRRTDKQDGETLIQEFLEKAKSLPAATMSEEEVK
TALRKMKQELLSKNNTYITEILSRCVPAKTV
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacacaacctgtctatggacagtgcagccgaaagtggctttcta
agctttattttctccatgccggagaaaccggacacaactttcagaatatttgaccgtaat
gacttctacactgtccacggaaaagatgcagtattcgcggccaaggaagttttcaagacg
aatggggtcatcaaatatttgggctcagggagtcgcaagttggaaagtgtctgcctgagc
aagatgaacttcgaggcctttgtgagagacttgctgctggtgaggcagtacagagtggaa
gtttacaaaaaccacagcaagagcagcaaagactggaagctcgagtacaaggcctctcca
ggaaacttgactcagtttgaagagattctgttcggcgggggaaccggagcagtggggggt
gcaggagttgtagccgtgcgtgttgctacaggagctgacggacagcgcgtggtcggggtt
ggctatgtggacgctgcccagaggacgatgggagtgtgtgagtttcctgacaacgagatc
ttctccaacctggagtctcttcttgtccagatcggccccaaagagtgtctcttggcccag
ggcgatggcaacactgacagcagtaaactacggcaggtggtggagagaggcggcgtgctg
gtctctgagagaaagagagcggagttcagcagcaaagacacggtccaggatctgaaccgg
ctgctgagggccaagaagggagagagtgtggcgagcagcacgctgccggagctggacaaa
caggtggccatgtcgtgcttggctgcagtggtgcgtttccttgagctgctctctgacgag
tccaactttaactcctttagtctgacctctctggacctgggtcagtacatgaggctggac
aacgctgccgtcagggctctcaacctcttccagggagcccccgatgacacaagtggagct
cattcattggccggtctgttgaacaagtgccgcacgccgcagggtcagcggctggtcaac
cagtggatcaaacagcctctcatggacaaaaccaaaatagaggagaggctggacatggtg
gagagctttgtgtgtgactctgagctcagacagacctgtcaggaagatctgttgcggcgt
tttccggaccttaaccgtctgtccaagaagttccagcgtcactctgcgactcttcaggac
tgctaccgcgtctaccaggctgtgagccacctcccgacactcatcagcgccctggagaga
tactcaggtagctacgaggttctgttggaggcggtgttcctctctcctctcagagacctg
cactctgactttgttaaataccaggagatgattgaaaccacgctggacatgaaccagatt
gaccaccatgagttcctggtgaaggcgtcattcgaccccgtgttgagcgagctgagagaa
aagatggacgagctggaggagagcatgaaggtggtgctgaacagtgcagccagagaacta
ggtctggatgctggtaagacggtgaagctggagtctaacgccatgctgggcttctacctg
agagtcacctgcaaggaggagaagactctgaggaacaacaagaagttcagcacgctggac
gtccagaagaacggagtgcgcttcacaaacgggaagctgagctctctgaacgaggagtac
actaagaaccgtgaggagtacgaaggggcccaggacgccattgtcaaagagattatcaac
atcgcctcaggctacgtggatcctctccagacgatgagcgacgtgattgcgcagctggat
gccgtggtgagtttcgccgtggcgtccgtctccgctcctgtgccgttcgtgcggcctcgc
ctgctggcggacggatgcaggcggatggagctgacgcaggccagacatccctgcatggag
actgacgctgacaccgccttcatccccaacgacatcaccttcacccagggagagaagaac
ttctacatcattacaggaccaaatatgggcggtaaatcgacgttcatccgtcaggtggga
gtgatcgctctgatggcgcagatcggctgctttgtgccgtgtgaaaaggcggagcttagt
gtgattgacagcgtcctggccagggtgggagcgggagacagccaggtcaaaggagtgtcc
acttttatgtctgagatgctggagacggctgccatcctgcgctcggcaacagagaactct
ctcatcataatcgacgagctcggaagaggcacgtccacgtacgacggctttggtctggcc
tgggccataagcgaacacatcgcctccaaaatcagctgcttctgtctgttcgccactcac
ttccacgagctgacggccctggcagcgcagcagtccaccgtccacaacctgcacgtcacc
gctctgacctcacacaacactctcaccatgctgtacaggatcaaacacggtgtgtgcgac
cagagtttcggtatccatgtggccgagttggcttgcttcccgccatcggtggtggccatg
gcgaaggaaaaggcggaggagctggaggagttccaggaaccagcgggggggaagcaggag
aaggggcccgaggccaagagacgacgcacggacaaacaagacggggaaaccctgatccag
gagttcctggagaaggccaagtctctccctgctgccaccatgagtgaagaagaggtgaag
acagcgctgaggaagatgaagcaggagctcctctccaaaaacaacacgtatatcacagag
atcctttcacgctgtgttcctgcaaaaacagtttga
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