KEGG   Trematomus bernacchii (emerald rockcod): 117473557
Entry
117473557         CDS       T09643                                 
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    117473557 (msh2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tben03400]
    117473557 (msh2)
DNA repair and recombination proteins [BR:tben03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     117473557 (msh2)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_II MutS_I AAA_27
Other DBs
NCBI-GeneID: 117473557
NCBI-ProteinID: XP_033975076
LinkDB
Position
Unknown
AA seq 931 aa
MAVQPKHNLSMDSAAESGFLSFIFSMPEKPDTTFRIFDRNDFYTVHGKDAVFAAKEVFKT
NGVIKYLGSGSRKLESVCLSKMNFEAFVRDLLLVRQYRVEVYKNHSKSSKDWKLEYKASP
GNLTQFEEILFGGGTGAVGGAGVVAVRVATGADGQRVVGVGYVDAAQRTMGVCEFPDNEI
FSNLESLLVQIGPKECLLAQGDGNTDSSKLRQVVERGGVLVSERKRAEFSSKDTVQDLNR
LLRAKKGESVASSTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTSLDLGQYMRLD
NAAVRALNLFQGAPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLDMV
ESFVCDSELRQTCQEDLLRRFPDLNRLSKKFQRHSATLQDCYRVYQAVSHLPTLISALER
YSGSYEVLLEAVFLSPLRDLHSDFVKYQEMIETTLDMNQIDHHEFLVKASFDPVLSELRE
KMDELEESMKVVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKTLRNNKKFSTLD
VQKNGVRFTNGKLSSLNEEYTKNREEYEGAQDAIVKEIINIASGYVDPLQTMSDVIAQLD
AVVSFAVASVSAPVPFVRPRLLADGCRRMELTQARHPCMETDADTAFIPNDITFTQGEKN
FYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKGVS
TFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHIASKISCFCLFATH
FHELTALAAQQSTVHNLHVTALTSHNTLTMLYRIKHGVCDQSFGIHVAELACFPPSVVAM
AKEKAEELEEFQEPAGGKQEKGPEAKRRRTDKQDGETLIQEFLEKAKSLPAATMSEEEVK
TALRKMKQELLSKNNTYITEILSRCVPAKTV
NT seq 2796 nt   +upstreamnt  +downstreamnt
atggcggtgcaaccgaaacacaacctgtctatggacagtgcagccgaaagtggctttcta
agctttattttctccatgccggagaaaccggacacaactttcagaatatttgaccgtaat
gacttctacactgtccacggaaaagatgcagtattcgcggccaaggaagttttcaagacg
aatggggtcatcaaatatttgggctcagggagtcgcaagttggaaagtgtctgcctgagc
aagatgaacttcgaggcctttgtgagagacttgctgctggtgaggcagtacagagtggaa
gtttacaaaaaccacagcaagagcagcaaagactggaagctcgagtacaaggcctctcca
ggaaacttgactcagtttgaagagattctgttcggcgggggaaccggagcagtggggggt
gcaggagttgtagccgtgcgtgttgctacaggagctgacggacagcgcgtggtcggggtt
ggctatgtggacgctgcccagaggacgatgggagtgtgtgagtttcctgacaacgagatc
ttctccaacctggagtctcttcttgtccagatcggccccaaagagtgtctcttggcccag
ggcgatggcaacactgacagcagtaaactacggcaggtggtggagagaggcggcgtgctg
gtctctgagagaaagagagcggagttcagcagcaaagacacggtccaggatctgaaccgg
ctgctgagggccaagaagggagagagtgtggcgagcagcacgctgccggagctggacaaa
caggtggccatgtcgtgcttggctgcagtggtgcgtttccttgagctgctctctgacgag
tccaactttaactcctttagtctgacctctctggacctgggtcagtacatgaggctggac
aacgctgccgtcagggctctcaacctcttccagggagcccccgatgacacaagtggagct
cattcattggccggtctgttgaacaagtgccgcacgccgcagggtcagcggctggtcaac
cagtggatcaaacagcctctcatggacaaaaccaaaatagaggagaggctggacatggtg
gagagctttgtgtgtgactctgagctcagacagacctgtcaggaagatctgttgcggcgt
tttccggaccttaaccgtctgtccaagaagttccagcgtcactctgcgactcttcaggac
tgctaccgcgtctaccaggctgtgagccacctcccgacactcatcagcgccctggagaga
tactcaggtagctacgaggttctgttggaggcggtgttcctctctcctctcagagacctg
cactctgactttgttaaataccaggagatgattgaaaccacgctggacatgaaccagatt
gaccaccatgagttcctggtgaaggcgtcattcgaccccgtgttgagcgagctgagagaa
aagatggacgagctggaggagagcatgaaggtggtgctgaacagtgcagccagagaacta
ggtctggatgctggtaagacggtgaagctggagtctaacgccatgctgggcttctacctg
agagtcacctgcaaggaggagaagactctgaggaacaacaagaagttcagcacgctggac
gtccagaagaacggagtgcgcttcacaaacgggaagctgagctctctgaacgaggagtac
actaagaaccgtgaggagtacgaaggggcccaggacgccattgtcaaagagattatcaac
atcgcctcaggctacgtggatcctctccagacgatgagcgacgtgattgcgcagctggat
gccgtggtgagtttcgccgtggcgtccgtctccgctcctgtgccgttcgtgcggcctcgc
ctgctggcggacggatgcaggcggatggagctgacgcaggccagacatccctgcatggag
actgacgctgacaccgccttcatccccaacgacatcaccttcacccagggagagaagaac
ttctacatcattacaggaccaaatatgggcggtaaatcgacgttcatccgtcaggtggga
gtgatcgctctgatggcgcagatcggctgctttgtgccgtgtgaaaaggcggagcttagt
gtgattgacagcgtcctggccagggtgggagcgggagacagccaggtcaaaggagtgtcc
acttttatgtctgagatgctggagacggctgccatcctgcgctcggcaacagagaactct
ctcatcataatcgacgagctcggaagaggcacgtccacgtacgacggctttggtctggcc
tgggccataagcgaacacatcgcctccaaaatcagctgcttctgtctgttcgccactcac
ttccacgagctgacggccctggcagcgcagcagtccaccgtccacaacctgcacgtcacc
gctctgacctcacacaacactctcaccatgctgtacaggatcaaacacggtgtgtgcgac
cagagtttcggtatccatgtggccgagttggcttgcttcccgccatcggtggtggccatg
gcgaaggaaaaggcggaggagctggaggagttccaggaaccagcgggggggaagcaggag
aaggggcccgaggccaagagacgacgcacggacaaacaagacggggaaaccctgatccag
gagttcctggagaaggccaagtctctccctgctgccaccatgagtgaagaagaggtgaag
acagcgctgaggaagatgaagcaggagctcctctccaaaaacaacacgtatatcacagag
atcctttcacgctgtgttcctgcaaaaacagtttga

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