Trematomus bernacchii (emerald rockcod): 117473570
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Entry
117473570 CDS
T09643
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03430
Mismatch repair
tben03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117473570 (pms2)
03460 Fanconi anemia pathway
117473570 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117473570 (pms2)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
117473570 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117473570
NCBI-ProteinID:
XP_033975105
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MSDACTSEPAGAIKAIDKQSVHQICSGQVVLTLATAVKELVENSIDAGATNVDVRLKECG
AELVEVSDNGKGVDEANFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSGLSV
VTCHESTQVGTKLVFDHKGHLVQQSPQPRQQGTTVSLQQLFNTLPVRYKEFQRNIKKEYA
KMIHILQSYCIISTGVRITCSNQNGQGKRSTVLSTSGSQSMRDNIGAIFGPKQLQSILPF
QQVSPAENVIEEYGLTDADLPKQLFTMTGFVTRADHGAGRSSTDRQFFYVNNRPCDPVKV
TKLVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQIFLQEEKLLLAILKTSLINM
YESGVNKISLNYTLKPSMNTKSASGISQVVNSNGKMQEPAEEKDHVTRCPKSSVNLAALK
AAFSSSHSSNHGNKSSVAKAANSGPTQKTLQTFFKDTVKSPTCNSSVRSPLKATRDLAEY
SPVGKSVLDGFRYGKTSCSDADTKKESAVTMPSPDIEVSGLEFRSSEPDTDCVKEGSDNT
QTVPEPHTSNEDCPVSPNAKRARKEKPHSPTKHESNTSSKCSSTVDASVRLQKRTVNLQF
SLQELAGKVKRIQDLQRQKDDDELLYRRFRAKINPGENNSAEEELKKEISKDMFKEMEII
GQFNLGFIITKLNSDIFIIDQHASDEKYNFEMLQQHNVLQGQKLIVPQKLHLTAISENVL
MENIEIFRKNGFEFLVDEDAQVMERVKLVSLPTSKNWTFGPPDIEELIFMLSDSPGVMCR
PSRVRQMFASRACRKSVMIGTALSVSEMKKLLIHMGEIEQPWNCPHGRPTMRHLANLDMI
SQD
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcttgcacctctgaacctgcaggagccatcaaggccattgacaagcagtca
gtgcatcagatctgctcaggacaggtggtgctgactttggccactgctgtcaaagagctg
gtggaaaacagcatcgatgcaggggccaccaatgttgatgtcaggctgaaggagtgtgga
gctgaactagtggaagtgtcagacaatggcaaaggagtagatgaggcaaactttgaagga
ctgacattaaaacatcacacgtctaagctgagggatttctccgatctcatccatgtggaa
acatttggcttcagaggtgaagccctcagctctttatgtgctctgagcggcctgagtgtg
gtgacgtgccatgaatccactcaggtgggcaccaagctggtgtttgaccacaaaggccac
ctggtgcagcagtcccctcaaccccggcagcaaggcaccaccgtcagcctgcagcagctc
ttcaacaccctgcctgttcgctacaaggagttccaacgcaacattaagaaggagtatgcc
aaaatgatacacatcctgcagtcctactgtatcatctctacaggagtgcggatcacctgc
tccaaccagaacgggcaggggaagcgcagcaccgtcctcagcaccagtggctcccagagc
atgagagacaacataggggccatattcggaccaaaacagctacagagtattctgcctttt
cagcaagtgtctcctgcagaaaatgtcattgaagaatatggactgacagatgcagatctc
cccaaacagctttttaccatgacagggtttgtgacccgagcggaccatggtgctgggagg
agttcaacagacaggcagttcttttatgttaacaaccggccgtgtgatcctgttaaggtg
accaaacttgtaaatgaagtgtatcacatgtacaacagacatcaatatccctttgttgcc
ctgaacatagctgttgcctcagagtgtgtggacgtgaacgtaaccccagacaaacgacag
attttccttcaggaggagaaactcctgctggctattctcaagacctctctcatcaacatg
tatgagtcgggagtcaataagatcagcctgaactacacgctgaaaccaagcatgaataca
aagtctgcgtctggaatcagtcaggtcgtcaactctaatgggaaaatgcaagagcctgca
gaagaaaaggatcatgtgactcggtgcccaaagtcatctgtaaacttagccgctctaaaa
gctgctttttcaagtagtcacagctcaaatcatgggaacaagtcaagcgtggcaaaagct
gccaacagtggcccgacacaaaaaacactgcagacgtttttcaaggacaccgtcaaatct
cctacgtgcaactccagtgtaagatctcctttgaaagccacaagagatttagctgaatac
tcccctgtgggaaagtcagtgctcgatgggttcaggtacggaaaaacgtcatgcagtgac
gccgatactaaaaaagagagcgctgtcactatgccatcaccagatattgaggtttctgga
ctggagttcagatcttcggagccagacactgactgtgttaaagaagggtcagataatact
caaactgtccctgagccacacacttccaatgaggactgtcctgtgagccccaatgctaag
agagccaggaaagagaaaccacattcaccaacaaaacatgaatccaacacttcttcgaaa
tgttcctcgacggtggatgcttcagtgcgcctacagaagaggacggtgaacctccagttt
tctttacaagagctggcagggaaggtgaagaggatacaggatctgcagagacagaaggat
gatgatgagctgctctatcgacgcttcagggccaagatcaaccccggagaaaacaacagt
gcagaggaagagctgaagaaagagatcagtaaagatatgtttaaggaaatggagatcatc
ggccagttcaacctgggcttcattatcaccaaactgaactcggacatcttcatcattgac
cagcatgcatcagatgagaaatacaactttgagatgctgcagcaacacaatgttctccaa
ggacagaaactcatagtccctcagaagcttcacctaactgctatcagtgaaaatgtgctc
atggagaacattgagattttcaggaagaatggctttgagtttcttgtggatgaggacgct
caggtcatggagagggtaaagctggtatctctgcccaccagtaaaaactggacttttggc
ccccccgacattgaagagctgatcttcatgctgagtgacagcccgggggtcatgtgtcga
ccgtcccgcgtcaggcagatgtttgcctcccgagcttgtcggaaatctgtgatgatcggc
actgcactgagcgtcagtgagatgaagaagctcctgattcacatgggggagatcgagcaa
ccctggaactgtcctcacggcagacccaccatgagacacctcgccaacctagacatgatc
tcacaagactga
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