Trematomus bernacchii (emerald rockcod): 117473623
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Entry
117473623 CDS
T09643
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tben03016
]
117473623 (trub1)
Enzymes [BR:
tben01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
117473623 (trub1)
Transfer RNA biogenesis [BR:
tben03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
117473623 (trub1)
Prokaryotic type
117473623 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
117473623
NCBI-ProteinID:
XP_033975189
LinkDB
All DBs
Position
Unknown
AA seq
261 aa
AA seq
DB search
MARIISSNSSLTKLQALNGLFAIYKKQGPTSANVLNSLKEVLLREAGVENPNSRKRKKQS
LKMGHGGTLDSNACGVLVVGVGNGTKMLTTMLAGSKKYVAVGQLGKATDTLDAAGSVVLE
KDFEHVTRLEVEEKLKTFTGDIMQVPPLYSALKRDGQRLSALLMKGHKVEAKPARAVTVY
NLTLQEFTPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELTRTKQGQFTLEEHALQ
EEQWSLEHILRALQPCPEALS
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaatcatcagcagcaatagttccttaactaaactacaggctttaaatggattg
tttgcgatatataaaaaacaagggccgacttcagcaaacgtgctgaactctctcaaagaa
gttttactcagggaggctggtgtcgaaaacccaaactcgcggaagaggaagaagcagagc
ctgaagatggggcacggcggaacgctggacagcaacgcgtgtggggttctggtggttggg
gttgggaacgggacaaagatgctcactacgatgttggctggctctaagaaatatgttgct
gtagggcaactgggcaaagcaacagacactcttgatgccgctggcagtgtggtgctggag
aaagactttgaacacgtaaccaggttggaagttgaggagaaactgaaaacgttcactggt
gacatcatgcaagttcctccactctactctgcactgaagagggacggccagcgcctgtct
gccctgctgatgaagggccacaaggtggaggccaaaccagcgcgggctgtcaccgtgtac
aacctgaccctgcaggagttcacccccccgctcttcaccctggatattgagtgcggtggt
ggattttatgtcagaagtttggtggatgacctgggaaaagctctgtcgtcatgtgctcat
gtgaaggagctaacccggaccaagcagggccagttcaccctggaggagcacgccctgcag
gaggagcagtggagtctggagcacatcctgagggccctgcagccctgccccgaggccctc
agctga
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integrated database retrieval system
