Trematomus bernacchii (emerald rockcod): 117474396
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Entry
117474396 CDS
T09643
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117474396 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117474396 (ddx61)
03036 Chromosome and associated proteins [BR:
tben03036
]
117474396 (ddx61)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117474396 (ddx61)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117474396 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
117474396 (ddx61)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117474396 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117474396
NCBI-ProteinID:
XP_033976099
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MATARTANPMIGLNKPANGQLKGQMGLLSGVQQSSALQKKTSIPQSSGGIKFGDDWKKCL
DLPPKDCRMRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIALSGRDI
LARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQMSQISIQLSKHLGGVKV
MATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKMDRAQLIVMDEADKLLSQDF
VVLIEDIISFMPKDRQILLYSATFPISVQKFMSKHLSKPYEINLMEELTLKGITQYYAYV
TERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRV
FHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAIN
LITSEDRYNLKNIEDQLVTDIKPIPSCIDKSLYVAEFHSVDPDAEDDELEIGGRNKELGG
I
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagcaaacccaatgattggattgaacaaaccagcaaatgggcag
ctcaaaggacagatgggactcctttcgggtgtccagcagtcgtctgccctccagaagaag
accagcattcctcagagcagcgggggcatcaaatttggtgatgactggaagaagtgcctg
gacctgcctccgaaggactgcaggatgagaacttcggatgtgacatcaactaagggaaat
gaatttgaagactactgcctaaagcgcgaactgcttatgggcatctttgaaatgggatgg
gagaaaccgtcccctgtccaggaggagagtatccccatcgctctgtcaggcagagatatt
ttggctcgtgctaagaatggcacaggaaaaagtggagcctacctcatccctctgctggag
aggatagacctgaagaaggatcacattcaggccatagtaatggtgccaacaagagagctg
gcccttcagatgagccagatcagcatccagctcagcaagcacctcggtggtgtcaaggtg
atggcgaccacgggtggcaccaacctgagggacgacatcatgcgtcttgatgagacagtg
catgtagtgattgctacaccaggcaggatcctcgacctgatcaagaagggtgtggcaaaa
atggacagagcccaactgattgtgatggatgaggcagataagctgctgtcccaggacttt
gtggtcctgattgaagatatcatcagcttcatgccaaaggaccgtcagatcttgctttac
tctgccacgttccccatcagtgtgcaaaaattcatgagcaagcacctgtcgaagccttat
gagatcaacctgatggaggaactgaccttgaagggcatcactcagtactacgcttatgtg
actgaaagacaaaaggtccactgtctcaacacactcttttctaggcttcagatcaatcag
tccatcatcttctgtaactccacccagcgggttgagcttctggccaagaaaatcacccag
ctgggatactcgtgcttctacatccatgcaaagatgatgcaggagtacaggaaccgtgtg
ttccacgacttcaggaatggattgtgcagaaacctggtctgcacagatctgtttactcgg
ggaattgacatccaggcagtgaatgtggtcatcaactttgacttccctaaaaatgcagag
acctacctgcatcgcatcggcagatcagggcgttttggtcacctgggtctggccatcaac
ctgataacttcagaggaccgctacaacctgaagaacattgaggatcaactggtcactgac
atcaagcccatccccagctgcattgataagagcctgtatgtggcagagtttcactccgtt
gaccccgatgccgaagacgacgaacttgagatcgggggccgaaacaaggaactgggagga
atctga
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