Trematomus bernacchii (emerald rockcod): 117474503
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Entry
117474503 CDS
T09643
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03030
DNA replication
tben03410
Base excision repair
tben03420
Nucleotide excision repair
tben03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117474503 (rfc1)
03410 Base excision repair
117474503 (rfc1)
03420 Nucleotide excision repair
117474503 (rfc1)
03430 Mismatch repair
117474503 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tben03032
]
117474503 (rfc1)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117474503 (rfc1)
DNA replication proteins [BR:
tben03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117474503 (rfc1)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117474503 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
AAA_30
AAA_5
AAA_17
AAA_33
AAA_16
BRCT_2
AAA_14
Rad17
RNA_helicase
nSTAND3
AAA_7
AAA_18
NTPase_1
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117474503
NCBI-ProteinID:
XP_033976213
LinkDB
All DBs
Position
Unknown
AA seq
1183 aa
AA seq
DB search
MDIRRFFAPTASKPAVQKPASNGNIKTEKEEKKKKKKNPLSSDEEVKKKETTKVKSSKTE
EKLKDGDKKRKKQTIIVSDSDDEEPVGKSKKSPKEKQKKSKSEMPPKKDPVQYVSETDSD
SDSFQTLKKVSKTKPKQNGTAKQTKSDARPGAKEGLKSPVTPSSTKGKTAVKSPPTPVTP
KSAPPPAPKHTPTSVLDYFGSAAVQRSEKKLVASTKRKTPTQDTDDLSDEQIAKQLQMHE
DMELEKQVHEDEEFARTLAMLDEEPQAKKARKGSDEKPAPTTLPKKISPDSAAGSLSSPS
KSSRRGSMSEDAISPTPKKNPASVRASSKLATMKKEQEERDVSSKSKTIISPSKIKISPK
KEPLASPRYEKKFTPKTGTTVKTSPKKPEVSKSTSTSPDDAEKKKNTAAFRNFLNRDGPR
ALGSKEIPQGAENCLEGCVFVLTGVMESMERDDAKSLIERYGGKVTGNISKKTTYMVQGR
DSGVSKLEKAESFGTKILDEDGLLELISTKPGKKSKYEIAAEAENKASKTKTPPGRTSKS
TPTSQKISPSKGNSRSPHTPSPSKTGLAPGHGAGTRGRDTPPGRGSAHTARRELGLSSSS
AASPSEKGEDASLLWVDKYRPLSLKAVIGQQGDQSCANKLVRWLQNWYRHHGSGTSKPPV
ARFGKFGGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGLSFVEMNASCTRSKNSLKE
VVSESLNNTSIEGFYKGTSQKVTSKHVLIMDEVDGMAGNEDRGGIQEMISLIKTSKIPII
FMCNDRNHMKIRSLANHCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEIILASNQ
DIRQVIHNLSMWSAKDKVMTYDQCKTDAANARKDMKMGPFDVCRKVFAFGDETAHMSFID
KSDLFFHDYSLAPLFVQENYLHVRPKAAGGDPKSHLMLLSKAADSISDGDLVDRRIRSGQ
NWSLLPTQAVYASVLPGELMRGYMSQFPTFPSWLGKHSSTSKHSRIVQELSSHMGLKTMS
SRQAVNLDYLFYLRQALLSPLQRLGAEGAAQAVQLLDDYQLVREDVDSIMEISVWGGQPD
PYSKLESKVKAAFTRAYNKEVHLTPYSLQVVKKGRRGGAGESELGGEEVANEAQESEDEG
VKVDAMIKQKKAKPIKKEKNEKKNEKKEASGKGKGKGKGKAKK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgactgcaagcaagcctgcagtgcagaaaccagct
tcaaatggaaacatcaaaacagagaaggaggagaagaaaaagaagaagaagaatcctctc
tcttcagacgaggaagtgaaaaagaaagagaccaccaaggtgaaaagctccaaaacagag
gagaaactcaaggatggtgacaaaaagcggaagaagcagaccatcatagtgtctgactcc
gacgacgaggagccagtgggaaagtcaaagaaatcccccaaagagaaacagaagaagagc
aaatcagagatgcctcccaaaaaggatcctgtgcagtatgtctctgagacagactcagac
agcgactcatttcagaccctgaagaaggtctccaaaactaaacccaagcagaacggcacg
gccaaacagacaaagtcagacgctcgccccggagccaaagagggactgaagtctcccgtc
actccctcctccacaaaggggaaaactgcggtgaagtctcctcctacgcccgtcacccct
aagtcagccccgcctcctgcccccaaacacacccccacttcagtactcgactacttcggc
agtgcagctgtccaacgttcagagaagaagctcgtagccagcaccaaacgaaagacgcca
actcaggacacagatgatctgagtgatgagcaaatcgccaaacagctgcagatgcacgag
gacatggagctggagaagcaggtccatgaggatgaggagtttgccagaactctggccatg
ctggatgaggagcctcaagcgaagaaggctcgtaaaggctctgatgaaaaaccagcccct
accacattacctaaaaagatcagtccagattctgctgcgggcagcctgagcagtccgtca
aagagcagccgaagaggcagcatgtcggaggatgccattagtcccacccctaagaagaac
cccgcctccgtcagagccagctccaaactggccacgatgaagaaagagcaagaagagaga
gatgtatcgtcaaagagcaaaacaattatttcgccatcaaaaatcaaaatctcccccaaa
aaggagccgctcgcttctccgagatacgagaagaagttcactcccaaaacaggaaccacg
gttaaaacgtctcccaagaaaccagaggtgagcaagagcacgagtacgagtcctgacgac
gcagagaagaagaagaacactgcagctttcaggaacttcctcaacagggacggaccccga
gctctgggctcaaaggaaatccctcagggtgcagagaactgtttggagggctgtgtgttt
gtgctgacgggggtcatggagtccatggagagggatgacgccaaatccctgatcgagcgc
tacggaggcaaggtgacgggcaacatcagcaagaagaccacctacatggtgcagggcaga
gacagcggagtctccaaactcgagaaggcggagagttttgggaccaagatcctggatgaa
gatggtctgttggagctgatcagcaccaaacctggaaagaagtccaagtacgagatcgct
gcagaagctgagaacaaagcctcaaagaccaagactccccccggcaggacttcaaagagc
acccccacatctcagaagatctctccctctaagggtaactcccgctcccctcacaccccg
agcccctcaaagaccggcctggctccgggccacggcgccgggacccgaggcagagacacc
cccccggggaggggctcggcccacacagcccggagggagctgggcctctcctcttcctca
gcagcctccccctcagagaaaggggaggacgccagcctgctgtgggtggacaagtaccgc
ccactctctctgaaggctgtgattggccagcagggagatcagagctgtgccaacaagctg
gtccgctggctgcagaactggtaccgacaccacggcagcggcacctccaaaccaccagtt
gcaaggttcggtaagtttggaggcggcaaagatgacggatcaggattcaaagctgctctg
ctctctggacccccgggcgtggggaagaccaccacagcagccctggtctgtgaggagttg
ggcctcagttttgtggagatgaacgccagctgcactcgcagcaaaaacagtttgaaggaa
gtcgtgtccgagtcactcaacaacacgagcatcgagggcttctacaaaggcacgtctcag
aaagtgaccagtaagcacgtcctgatcatggatgaggtcgatggcatggccggcaacgag
gaccgcggaggaatccaggagatgatcagtctgatcaaaacgtcaaagattcccatcatc
ttcatgtgcaacgatcgtaaccacatgaagatcaggtcgctggcaaaccactgcttcgac
ctgcgcttccagaggccccgagtggaacagatcaagggagccatgatgtcccttgctttc
aaggagggaatcaagatcccccctccagctcttaatgagataatcctggcctccaatcag
gatatccgacaggtgattcacaacctcagcatgtggtcggccaaagacaaggtgatgacg
tacgatcagtgcaagacggatgcagcgaacgcccgcaaggacatgaagatgggtccgttt
gacgtctgcaggaaggtgttcgccttcggggacgagaccgcccacatgagcttcatcgac
aaatccgaccttttcttccacgactactcgctagcgccgctcttcgtccaggagaactac
ctgcacgttcggccaaaggctgcgggtggggacccgaagtcccacctgatgctgctcagc
aaggcggccgactccatctctgacggagacctggtggaccgacggatccgctcggggcag
aactggtccctgctgcccacccaggctgtctatgccagtgtgttacccggcgagctcatg
aggggctacatgagtcagttccccaccttccccagctggctcggcaagcactcctccacc
agcaagcactctcgcatcgtgcaggagctttcctcacacatgggattaaagacgatgagc
agccggcaggcggtgaacctggactacctgttctacctgcgccaggcgctgctcagcccg
ctgcagaggctcggagcggagggcgccgcccaggctgtgcagctgctggacgactaccag
ctggtcagggaggacgtggacagcatcatggagatcagcgtgtggggggggcaaccagac
ccctactctaaactagagtcaaaggtgaaggcagcgttcacccgggcctacaacaaggag
gtccacctgacgccgtactctctgcaggtcgtgaagaagggccgccgcgggggtgcgggg
gagtcggagctgggaggggaggaggtggccaatgaagcgcaggagtctgaggacgagggc
gtcaaagtggacgccatgatcaaacagaagaaggccaaacctatcaagaaggagaagaac
gagaagaagaacgagaagaaggaggcttctgggaaggggaagggcaaaggcaaaggaaag
gccaagaaatga
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integrated database retrieval system
