KEGG   Trematomus bernacchii (emerald rockcod): 117474564
Entry
117474564         CDS       T09643                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1-like
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tben  Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:tben00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tben03041]
    117474564
Spliceosome [BR:tben03041]
 Complex B
  Other components
   Complex B specific factors
    117474564
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_EML ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_Nup120_160 Beta-prop_WDR75_1st NBCH_WD40 WD40_MABP1-WDR62_1st LisH_TPL Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_NWD2_C Beta-prop_HPS5 Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_IP5PC_F RMC1_N Beta-prop_LRRK2 Beta-prop_WDR75_2nd VPS8_N WD40_like Beta-prop_RSE1_1st Mala_s_1-like PD40 RicinB_lectin_2 Beta-prop_IFT122_2nd WDR54 LisH
Other DBs
NCBI-GeneID: 117474564
NCBI-ProteinID: XP_033976299
LinkDB
Position
Unknown
AA seq 509 aa
MAAEMEPSDVIRLIMQYLKENNLYRTLTTLQEETTVSLNTVESIDSFIADIKSGHWDSVL
LAIESLKLPDNTLIDLYEQVVMELIEMREIEAARSLLRQTDPMIMLKQTQPERYIHLETL
LTCVHFDPCEAYPNGGSKEKRRREIAEALVREVSVVPPSRLMGLLGQSLKIQQCPGNLFS
DMAIDTSANKDRHVEKESFPTQLYRHIKFGRRSHVECARFSPDGKYLITGSVDGFIEVWN
FNTGKISKDLKYQAHDSFMMMDDAVLCLCFSHETDLLATGAQNGKIKVWNIESGLCLRRF
EHAHHKGVTCLNFSKDNDLILSASINQTIRIYALRSGTTLKELNGHSSIVTDASFTQDGF
HIISASSDGTVKIWNTESGKCIHTYKNLSHTSEVPVNNVIPLPQNPEHFVICNRSNTVVI
MSMHGQTIKTFSSDREERAKFVCCTLSPRGEWIYCVGEDLVLYCFNYTTGRLQKTLTVHE
KAVIGIAHHPHENLIATYSEDGLLRLWKP
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggctgcggagatggagccctctgatgtgatccgcctgataatgcagtacctcaaggag
aacaacctctaccgaacactgaccaccttacaggaggagaccaccgtctcactcaacaca
gtggaaagcatcgacagcttcattgcagatataaagagcggccactgggactccgtcctg
ctggctatcgagtccctcaagttgcctgacaacacactgattgacctttatgagcaggta
gtaatggagctcattgagatgagggagattgaagcagctcgctcgctcctcagacaaacc
gacccaatgatcatgttgaagcagacgcagccagagaggtacattcatttggagaccctg
ctaacatgcgtccactttgacccttgcgaggcgtacccaaatggcggcagcaaggagaag
cggcgcagggaaatagccgaggctctggtgagagaggtcagcgtggttcccccttctcgc
ctcatggggctcctgggacaatctctaaagatacagcagtgtccaggtaatctgttctct
gacatggccatcgacacatctgccaacaaggacagacatgtggagaaggagagctttcca
acacagctgtaccgccacatcaagttcgggcgtaggtcacatgtagagtgtgcccgtttt
tctcccgatggaaagtacttaatcacgggatcggtggatgggttcatcgaggtctggaac
tttaatactggaaaaataagtaaggatttaaagtaccaggcccatgatagcttcatgatg
atggatgatgctgtgctgtgtctgtgcttcagtcacgaaacagacctactggcaactggg
gctcagaatggcaaaataaaggtgtggaatatcgagagcggtttgtgtctgcgcaggttt
gaacatgcacaccacaaaggtgtgacctgtctgaacttctccaaggacaacgacctgatc
ctcagtgcctccattaaccagaccatcagaatctatgcgctgaggtcaggcacgacacta
aaggagttgaatggtcattcatcgattgtgactgatgcttctttcactcaagatggattt
cacatcatcagtgcctcctctgacggcacggttaagatttggaatacagaatccggaaaa
tgcatccacacttacaaaaatctgtcccacacatcagaagttcccgtcaacaacgtgatt
cctctgccccaaaacccagagcactttgtgatttgtaaccgctccaacacggtggtcatc
atgagcatgcacggtcagactattaagaccttcagctcagatagagaggaaagggccaag
tttgtctgctgcacgctgtccccccgaggggagtggatttactgtgtgggggaggactta
gtgctctactgcttcaactacacaacggggaggctgcagaaaactctgactgttcatgaa
aaagctgtaattggcatcgctcaccacccacatgagaatctgatcgctacttacagtgag
gatggactcctgaggctttggaaaccttaa

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