Trematomus bernacchii (emerald rockcod): 117474571 Help Entry 117474571         CDS       T09643                                  Symbol pdcd11 Name (RefSeq) protein RRP5 homolog   KO K14792   rRNA biogenesis protein RRP5 Organism tben  Trematomus bernacchii (emerald rockcod) Brite KEGG Orthology (KO) [BR:tben00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:tben03009]     117474571 (pdcd11) Ribosome biogenesis [BR:tben03009]  Eukaryotic type   90S particles    Other 90S particles     117474571 (pdcd11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  S1_RRP5 S1 Spt6_S1 HAT_PRP39_C HAT_PRP39_N HAT_Syf1_CNRKL1_N Suf OB_RRP5_4th TPR_14 TPR_19 HAT_Syf1_CNRKL1_C OB_RRP5 ARM_TT21 TPR_16 TPR_CcmH_CycH ARM_TT21_5th DUF2110 TPR_15 RE_ScaI DUF1344 TPR_12 Motif Other DBs NCBI-GeneID:  117474571 NCBI-ProteinID:  XP_033976312 LinkDB All DBs Position Unknown AA seq 1811 aa AA seqDB search MASVEEDFPRGGSAKKPIESKIAVQRTEVDNLFQSNEPAETKKRKGAGKDDGKKLKKSKT GKEDGLTLNAASKCVEILHMKNLKEGILMLGCVKEVTDFEVTVSLPCGMQGFLSIKNICD SYTKLLSEQLESADTEEICSLQHIFSPGMLFRCVIAKLDLAKGGALSIQLSINPKLVNKA LTSNSLKAGMVLSGCVDSVEDHGYIVDIGLSGTKAFLPREAVKDKHPEELKVGQNVTCGV DEVKNDGRMIRLSLSTPTQACAESEQGWNLTNLLPGLLVKATIKKVTKHGLLLDFLSSFT GQVDFLHMEPEQTDSYTEGAQVRACVLYVDPSTRLVGLSLRTFLTQPGSSIDVSPAGGDR IGEVVKDCKMIAMHHMSGALLELPDNTMAFVHRNHVKESSEPSNENRVLARTEHICRIMD FSPMDQIHFASLRKSVISRRFFRYHDLQAGQVVEGTVSVLLPHGMMVKVSDHIKGLVPRT HLSDILLKNPEKKYIEGMKIKCRVLSVDAENKKLYLTRKKALVESPLPLFLSFSDARPGR VSHGYIVCIKDFGCIVRFYNNVKGLVPTSELSSEPIVSPQEVFYVGQVLKVKVLNCDPAK EKMAMSFKAAVEGDTEEAPQPQFDCEVGTKLEAKVLKKSVNGLEVAILPDENRAMLPTMH LSDHMSNCPLLWESLQEGDHISNIVCSSKTKQHVIVTKKPTVLWSLEEGVVAKDFSEITV GMQLVGWIKNIMSYGVFVEFPYGLVGLAPKSAMTNKFLSDTASAFQPGQTVLAKVTNLDE EKRRFLVTLKMSEVISPDGNAQTRLFNGVQERKAVSEMLASRENSELHQQLSALAVGEKL KLTVDTSSKDSGATFKSDDLTRATILATKHHVMGANLSPGQKATAVVLHVDILSGQVHVS LLPKLVAKKKSLTEGTKYTVMVQHVDKDFAVISLEDTAQLTVIQTSSQLNEIFLTDSERL KAGMCLAAEVIEASCEALQGLPLVSWARSAPNRQRTVSENLTSTKGHCFGDIVRGKVKKV KPTSIMVTLDDGSTGSVHVSEVGEVADVREGSFPTSSVKVGSEVTARVIGGREASSQRFL PFSHPKFTYTIPELTLIPSKLDESADFKAVPTKEKLNGYKVGEKIQCFVSKFVPERKTLE VTTDPSVTGTVELLALITNPTDARHPEKLYKLGQAVNAKVVEVSSKPQRLMLSLTGVHKL EKHSVAMGMVTNIQPTVGLLVKLPFGGMGAVAVTDLADAYRPNPLDGFSKDQLLRCFLLG EENGKWQLSIRPSRLNQKQTKPAKDPEVLSLDTLTAGQIIRGYVKSVGEQGVFIRLSANI TGRAQLQQSSKYFVSHHKVLSDHLTPNSLLTTKIVSIDTKEELVHLSLLPEDTGKPDVLP ESLGLPLRLLGEEKKEHDSNRRKRAASESEKTPEESTVSKKKKKKTKQSKSDENDSGVEV YFREEEDKEEEEVTKSVSVKVAQSSAAPSRLQLAAGFSWDVGLSSLKPASVAQEGDSSEG EDEDGSSKTQKKTRHELEQEKKAAEKALVQRETELMNPSLRPEDAAAFERLLLASPDSSL LWLQYMANHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENLYGTEESLKKV FERALQFCEPMPVFQQLADIYAKCDKTKEAEGLYKTMVKRFRQSKAVWLSYGTFLLQQGQ SDAASALLQRALKSLPSKESVDVIAKFAQLEYRYGDSEKGRTMFDKILTSYPKRTDLWSV FIDLMVKHGSQKEVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKLGTPQSIQAVKEKAME FVEAKGTEAAN NT seq 5436 nt NT seq  +upstreamnt  +downstreamnt atggcatctgtggaggaggacttccctcgaggagggtcggcaaagaagcccatcgagagt aaaatagctgtgcagaggacagaggtcgacaacttgttccagtcaaatgaaccagcagaa acaaagaaaagaaagggggcgggcaaagatgacggcaagaagctcaagaagtcaaagacg ggcaaggaagatggcctgacactgaacgcagcatccaagtgtgtggaaatcctgcacatg aagaatctgaaggagggcatcctgatgctgggctgtgtgaaggaggtgactgacttcgag gtgacggtcagtctgccctgtggcatgcaaggcttcctcagcatcaagaacatctgtgac tcgtacaccaagctgctcagtgagcaactggagtcagcggatacagaggagatctgctct ctgcaacacatcttctccccgggcatgctgttcaggtgtgtgattgccaagttggatcta gccaaaggaggcgctctcagcatccagctgtcaatcaatccaaagctggtcaacaaggct ctcacctcaaactctctgaaagctggcatggtcttgagtggatgtgtggacagcgtggag gatcatggctacatagttgacattggcctcagtggaaccaaagccttcctgcccagggaa gcagtaaaggacaaacacccagaagagctgaaagtgggtcagaacgtcacttgtggagtg gacgaagtaaagaacgatgggcgcatgattcgcctttctttgagcacccccacccaggcc tgtgctgaatccgaacaaggctggaacctcactaacctgctgcctggacttctggtcaaa gccaccatcaaaaaggtgaccaaacatggtctgctcctggacttcctgtcctccttcact ggccaggtggactttctccacatggagccagaacagacagacagctacaccgagggcgcc caggtgcgagcctgtgtgctgtatgtggatccctccacccgtctggtgggcctgagcctg cgcaccttcctcactcagcccgggtcctcaatcgacgtctctcctgctggaggagaccgc atcggagaggtggtgaaggactgcaagatgatcgccatgcaccacatgtctggagccttg ttggaactgcctgacaacacgatggccttcgtacataggaaccatgttaaggagtctagc gagccgtccaatgaaaaccgagtgctggccaggactgagcacatctgcaggatcatggac ttcagccccatggaccaaattcactttgctagtctgcgaaagagtgtgatttcaaggcgt ttcttcagatatcatgatcttcaggccggacaggttgtagagggcacggtatcagtcctg ctgcctcacggcatgatggtgaaggtgtctgaccacatcaaaggcctggtgccccgcaca cacctgtccgacatcctgctgaagaacccagagaagaagtacatagagggcatgaagatc aaatgtcgggtgctctccgtggacgcagagaataagaagctgtacctgaccaggaagaag gccctggtggagagccccctgccgctgttcctcagcttcagcgatgcccgtcccggccgc gtctcccacggctacatcgtctgcatcaaagactttggctgcatcgtgcgtttctacaac aacgtgaagggcctggtgccgaccagcgagctcagctccgagcccatcgtcagcccgcag gaggtcttctacgtggggcaggtgttaaaggttaaagttctcaattgtgaccccgctaag gagaagatggcgatgtcctttaaggcggcagtggagggagacacagaggaagccccccag ccccagtttgactgtgaggtggggacgaaactggaggccaaggtgctgaaaaagtcagtc aacggtctggaggtcgccatcctccctgacgaaaaccgtgccatgctacccacaatgcac ctttccgatcacatgtccaactgccctctgctgtgggagagcctgcaggagggagaccac atctcaaacatcgtctgctccagcaagaccaaacagcatgttatcgtcaccaagaagcca acagtgctatggtctctggaggaaggcgtggtggccaaggacttctctgagatcacagta ggaatgcagctggtcggttggatcaagaacatcatgtcgtacggcgtcttcgtggagttc ccttacggcctcgttgggctcgcacccaagtcggccatgaccaacaagttcctcagcgac acggcgtctgccttccagccgggccagacagtcctcgccaaagtgaccaacctggatgag gaaaaacggcgcttcctggtcacgctgaagatgtcagaggtcatctctccggacggcaat gcccagaccaggctcttcaacggcgtgcaggagagaaaagctgtgtctgaaatgttggct agcagagagaacagtgaactccaccagcagctgtctgctctggctgtgggggagaagctg aagctgactgtagatactagctccaaggacagcggcgccacatttaagtctgatgatttg acccgtgccaccatactggccaccaagcaccatgtcatgggtgctaatctgagcccagga cagaaagccactgcggtggtcctccatgttgacatcctgtccggacaggtccatgtgtcc ctcctccccaagctggtggcaaagaagaaatctttaactgaaggaacaaagtacacggtg atggtgcagcacgtggacaaagacttcgccgtcatctccctggaggacacggcccagctg acggtgatccagaccagcagccaactgaatgagatcttcctgactgactcggagaggctg aaggcgggcatgtgtctggcagctgaggtgatagaagccagctgtgaggcgctgcagggt ctccccctggtgtcctgggcgcgcagcgcacccaaccgacagcgcaccgtctcagaaaac ctgacgagcaccaagggccattgcttcggggacatcgtgcggggcaaagtgaagaaggtg aagcccacctccatcatggtcacattggatgacgggagcacgggcagcgtgcacgtgtcc gaggtgggggaggtcgcagatgtgcgtgaggggtccttccccacatcctccgttaaagtc ggcagcgaggtcaccgccagggtcatcggaggacgggaagcctccagtcagagattcttg cccttctcccatcccaagtttacatacaccatccctgagctcactctcatacccagcaaa ctggatgagagcgcagatttcaaagcagttccaacaaaagaaaaactaaacggctataag gtcggggaaaaaattcaatgctttgtttcaaagtttgttccagagaggaagactctggag gtcaccactgatccttctgttaccgggacagttgaactgctggccctgatcaccaatcca acagacgccagacacccagaaaaactctacaagctgggtcaagctgtcaacgccaaagtg gtggaagtgagctccaaacctcaacgcttaatgctgtcactcacgggtgtccacaagctg gagaaacacagtgttgctatggggatggtgaccaacatccagccgaccgtcggcctcctg gtcaagctgccgttcggcggcatgggggctgtggctgtcaccgacctggccgacgcctac aggccgaaccctctggacgggttcagcaaggaccagctgctcagatgtttccttctcggg gaagaaaatggaaagtggcagttgtccatacgtccatcgagactcaaccagaagcagacc aagccggcgaaggacccggaggttttatctttagacacactgacggcaggccagatcatc agaggctacgtcaagtctgtgggagagcagggggtcttcatcaggttgtcagcgaacatc acgggaagagctcaacttcaacagtcctccaaatactttgtcagccaccacaaggtcctc tctgatcacctgacccccaacagcctgctcaccaccaagatcgtcagcattgacacaaag gaagagctggtccacctctctctgctcccagaggacactgggaagccagacgtcctccca gagtccctcggcctgccgctgcgtctgctcggagaggagaagaaggagcacgactcgaac aggaggaaacgtgcagcatccgagagcgaaaagacaccagaagagtccaccgtctcaaag aagaagaagaagaagacaaagcaatcgaagagtgatgagaacgacagcggagtggaggtg tacttcagagaagaggaggataaggaagaggaagaagtaaccaaatctgtttctgtgaaa gtggctcagagctcagcagctccgtccagactgcagctggcagcaggtttctcctgggac gtgggactgagctccctgaagccggcctctgtagcgcaggagggcgactccagcgaggga gaggacgaagatggaagcagcaagacccagaagaagactcgccacgagctggagcaggag aagaaggcggcagagaaggccctggtgcagcgggagacggagctgatgaaccccagcctg cggcccgaggacgccgccgccttcgagcgcctgctgctcgcctcccccgacagctccctg ctgtggctgcagtacatggccaaccacctgcaggccacgcagatcgagcaggcccgcgcc gtggccgagagggccctcaaaaccatctccttcagggaggagcaggagaagctgaacgtg tgggtggcgctgctgaacctggagaacctgtacggcaccgaggagagtctgaagaaagtg tttgagcgggcgctgcagttctgcgagcccatgcccgtcttccagcagctggccgacatc tacgcaaagtgcgacaagaccaaggaggcagaaggcctgtataagacgatggtgaagcgt ttccgtcagagtaaggcggtgtggctgagctacgggaccttcctgctccagcaaggtcag agtgacgctgccagcgctctcctgcagagggcgctgaagagtctgccctccaaagaaagt gtggatgtgatcgccaagttcgctcagctcgagtaccgttatggcgattcggagaaaggt cgcaccatgtttgacaaaatcctgacaagctacccgaaacgcaccgacctgtggtccgtc ttcatcgacctcatggtcaaacatgggtcgcagaaggaagtcagggcgctctttgatcga gtgatccacttaagcgtttcagtgaaaaagatcaagttcttcttcaagcgctacttggag tacgagaagaagctcggcaccccgcagagcatccaggctgtcaaagagaaggccatggag tttgtggaagctaaaggcacagaggctgccaactaa

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