Trematomus bernacchii (emerald rockcod): 117474654
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Entry
117474654 CDS
T09643
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117474654 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117474654 (exosc1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117474654 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117474654 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
117474654
NCBI-ProteinID:
XP_033976488
LinkDB
All DBs
Position
Unknown
AA seq
194 aa
AA seq
DB search
MSPMKLCVPGDKLCSTEDCIPGTGVYLRHGCIYSSLTGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPQTHSKE
FRKVARVQPEFLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagcacagaagactgtatt
cccggcacaggagtttatctgcgacacggctgcatttactcctcactaacaggctatgtg
cttaagaaaaatgaaggagaggagttaccagtgatctcggttgtaagggaaacagaaaca
caactactaccagatgtaggagctatagtcacctgtaaggtgaccagcattaaccccagg
ttcgcaaaagtccacatcctttatgtaggctccacaccgctgaaggaccgcttcagagga
acaatcaggaaagaagatgtgcgtgccacagagaaagacaaggtggagacgtacaaaagc
ttcagacctggcgacatcgtcttggccaaagttatttctctcggagacgtgcagtcaaac
tacctgttgacaacagcagagaacgagctgggggtggtggtggcacacagtgaagcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgcccgcagacgcacagcaaagaa
ttccgcaaagtggcgcgagtgcagccggagtttcttcaggcatga
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