KEGG   Trematomus bernacchii (emerald rockcod): 117474654
Entry
117474654         CDS       T09643                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117474654 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tben03019]
    117474654 (exosc1)
Messenger RNA biogenesis [BR:tben03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     117474654 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     117474654 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 ECR1_N_2
Other DBs
NCBI-GeneID: 117474654
NCBI-ProteinID: XP_033976488
LinkDB
Position
Unknown
AA seq 194 aa
MSPMKLCVPGDKLCSTEDCIPGTGVYLRHGCIYSSLTGYVLKKNEGEELPVISVVRETET
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPQTHSKE
FRKVARVQPEFLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgacaagctatgcagcacagaagactgtatt
cccggcacaggagtttatctgcgacacggctgcatttactcctcactaacaggctatgtg
cttaagaaaaatgaaggagaggagttaccagtgatctcggttgtaagggaaacagaaaca
caactactaccagatgtaggagctatagtcacctgtaaggtgaccagcattaaccccagg
ttcgcaaaagtccacatcctttatgtaggctccacaccgctgaaggaccgcttcagagga
acaatcaggaaagaagatgtgcgtgccacagagaaagacaaggtggagacgtacaaaagc
ttcagacctggcgacatcgtcttggccaaagttatttctctcggagacgtgcagtcaaac
tacctgttgacaacagcagagaacgagctgggggtggtggtggcacacagtgaagcaggt
gcccagatggttcccatcagctggtgtgagatgcagtgcccgcagacgcacagcaaagaa
ttccgcaaagtggcgcgagtgcagccggagtttcttcaggcatga

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