KEGG   Trematomus bernacchii (emerald rockcod): 117474764
Entry
117474764         CDS       T09643                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117474764 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tben03021]
    117474764 (taf5)
   03036 Chromosome and associated proteins [BR:tben03036]
    117474764 (taf5)
Transcription machinery [BR:tben03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     117474764 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     117474764 (taf5)
Chromosome and associated proteins [BR:tben03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     117474764 (taf5)
    STAGA complex
     117474764 (taf5)
    TFTC complex
     117474764 (taf5)
    SAGA complex
     117474764 (taf5)
    SLIK complex
     117474764 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd TFIID_NTD2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_Aladin DSE1_N Beta-prop_TEP1_C CFAP251_N Beta-prop_SCAP WDR90_beta-prop_4th PAC11 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_SPT8 Tricorn_2nd Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_DCAF12 ASA1 Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_NOL10_N LisH_PAC1 LisH_TPL Beta-prop_WDR11_2nd Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 117474764
NCBI-ProteinID: XP_033976656
LinkDB
Position
Unknown
AA seq 749 aa
MAAVQGGQVDAVEEKDIKTEPSNDGGGNNNANDGRLLSTSPGSSSSTGSIKSTAGPPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLDLKGGDSSGAGSGAAAGSVELADGDAS
SLLSRVTSSASAVAPAPTKAAGEDQPDVNVVLSAYSQQGDPPLYQVYYSGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEDDLRILSSLSKREH
MRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEADNEEGKPKKKKPKKDSM
GSKSKKQDPNAPAQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPEILPSICFYTFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASELKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPHGYYFISGGHDRVARLWATDHYQPLRIFSGHLADVTCTRFHPNSNYVATGSSDRT
IRVWDVLTGNCVRIFTGHKGPIHSLAFSPNGKFLASGATDSRVLLWDIGHGLMIGELKGH
TDTVYSLRFSRDGEILASGSMDNTVRLWNATKAFDDLETDDFTAATGHVHLHDNSKELLL
GAYTSKSTPVIHLHFTRRNLLLAAGGYNP
NT seq 2250 nt   +upstreamnt  +downstreamnt
atggcggccgtacaaggtggtcaggtcgacgcggttgaagaaaaagacattaaaacagaa
ccatcaaacgatggcggtggaaataataatgcaaatgatggaaggctgctttctacgtcc
cctggctctagttcttcgactggaagtattaaatcaacggcaggacccccggaggatcag
cagacgctgctggcggtcctgcagttcctccgaaagaacaaactgactgagtctgtcgaa
atattgcgtcgtgaagccggattaccggaggattcactggacctgaaggggggtgactcc
tccggggcaggttctggtgctgctgcgggcagtgtggaactagcagacggggatgcgagc
tctcttctcagccgagtgaccagctcagcctccgctgtagctccggcgccaactaaagct
gctggggaggatcagccggacgtcaatgtggtgctgtcggcctacagtcagcagggagac
ccccccctgtaccaggtttactacagcggcctgaagaagttcatcgaatcggttctggac
tgtcaccgagcggagctgtcccaggtcttctacccgctgttcgtgcacatgtatctggaa
ctggtgtacaacaaccacgaaagtgaggccaaggcgttctttgaaaagttcagtggggat
caggagtgttactacgaagacgacctgcgcattctgtccagcctgtccaagagggagcac
atgagaggcaacgagacgctgctggacttccgcaccagcaagttcgtcctgcggatctcc
cgagactcctaccagctgctgaagaggcatctgcaggagcgccagaacaaccagatctgg
aacatcatacaagagcacctctacatcgacatcttcgatggcatgccccgtagcaagagc
cagatcgatgccatgtctggcagcctggccggggagggcaagcgggaggccaacaaggca
aaggtttactatggactgctgaaggaaccagaaattgagcttccccttgacgacgaggat
gaggaggcagacaatgaggagggcaaacccaagaagaagaaacccaaaaaggacagcatg
ggctccaagagcaagaagcaggatcctaacgcacctgcacagaccaggataccccttcca
gaactaaaggactcagacaagctggacaagatcatgtacatgaaggaggccaccaagagg
atccgcctgggaccagaaatcctgccttccatctgcttctacactttcctcaacgcttac
cagggtctgacagctgttgacttcacagacgactccagcctgatcgcggggggcttcgct
gactccacagtacgggtgtggagcgtcacgcccaagaagctccgcaaggtcaagtccgca
gcagacttgaatctgatcgacaaagagtcggacgacgtgttggagaggatcatggatgag
aagacggccagtgagttgaagatcctgtacggacacagcggcccagtgtacggcatcagc
ttcagcccggacagaaactacttgttgtcgagttctgaagatggtacggtccggctgtgg
agtcttcaaacattcacgtgtctggtgggctacaaaggccacaactacccagtgtgggat
acccaattttccccgcatgggtactattttatctccgggggacatgacagagttgcccgt
ctgtgggcgacagatcactaccagcctctacggatcttttctggtcacctagctgacgtc
acttgcacccgcttccaccccaactccaattatgtggccacagggtcatcggatcgcacc
atccgggtgtgggacgtcctgaccggaaactgcgtccgcatcttcaccggtcacaagggt
cctatccattcgctggctttctctcccaacgggaagttcctggcttcaggggccactgac
agcagagtgctcctgtgggacatcgggcatgggctgatgattggcgaactgaaaggccac
acagataccgtgtactctctgcgcttcagcagagacggagagatccttgcctccggctca
atggacaacacagttcgtctttggaacgctacaaaagcatttgatgatttagaaactgac
gatttcacggcggctacagggcatgtccatctacatgataactccaaggagcttctgctg
ggcgcctacacgtctaaatccacccccgtcatacaccttcacttcacccgcaggaacctg
ctgctggccgccgggggctacaatccatga

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