Trematomus bernacchii (emerald rockcod): 117474778
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Entry
117474778 CDS
T09643
Name
(RefSeq) DNA polymerase lambda-like
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03410
Base excision repair
tben03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117474778
03450 Non-homologous end-joining
117474778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117474778
Enzymes [BR:
tben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
117474778
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
117474778
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
117474778
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
117474778
NCBI-ProteinID:
XP_033976674
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MEPRHGIMKAFPKVKRARVLQGKDAPPVKKKPEEHDVKGYLQSETKNENIEEELPDVQPT
ANAIVEPTSDHSKQEETLDMAVLDTQEEVRGEEDGVSQSDLEALITGQTPQEETPGPSLE
PATDSAAQSVVPGKWVCAQSSQSKSNNFNKDITDKLEVLAKAYTHQGDKWRALSYSKAVN
ALKSYHKPITSHQEACQIRGIGKRMADKIDEIMESGHLRKLDHLGDAVPVLELFTNIWGA
GTKTAQLWYQLGFRTLVDIRTKAHLSTTQKIGLKHYDDFLDRMPREEAAAIEKVVKDAVH
AVDPGLLSMACGSYRRGKATCGDVDVLITHPDGKSHKGVFSKLLQSLRDSGFLTDDLVSH
EDNGEQKKYMGVCRLPDHRHRRLDIIVVPYNEFACAIMYFTGSAHFNRSMRAMAKTKRMS
LSEHSLNKDVVRQGSLKVFGGTPFTTKTEKDVFSILGIPYREPHERDW
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcgtcacggtattatgaaagcctttcccaaagttaaaagagcccgagtgtta
cagggaaaggatgctcccccagtgaagaagaaacctgaagaacatgatgtcaaaggttat
ttgcaatctgaaacaaagaatgaaaacattgaagaagagctgccagatgtccagccgact
gcaaacgctattgttgagccaacgtctgatcacagcaagcaagaggagaccttagacatg
gcagtcctagacactcaagaggaagtgcgcggagaggaagacggggtctctcagagtgac
ctggaagctcttatcactggtcagaccccccaagaggagactcctggccccagcctggag
cccgctacagactctgctgctcagagcgtcgtcccagggaagtgggtctgtgcccagtct
tctcagtccaaaagtaataacttcaacaaggacatcacggacaaactggaagtgctggcc
aaggcctacactcaccagggggacaagtggagggcactgagctactccaaggctgtcaac
gctctgaagagttaccacaagcccataacatcccatcaggaggcttgccagatccgagga
attggaaaacgtatggccgacaaaatcgatgagatcatggagagcggtcacctgcggaag
ctagaccacctcggggatgctgtgccagtgttggagctttttactaacatctggggtgca
gggactaaaactgcacagctgtggtaccaactgggatttcgcacactggtggacatccgc
acaaaagcccacctgagcaccactcagaaaataggactcaagcactacgatgattttctg
gaccgaatgcccagagaagaagcagctgccatagagaaagtggtgaaggatgctgtccat
gcagtagacccaggcctgttatcgatggcgtgtggctcctaccgtcggggaaaagccacg
tgtggagatgttgacgtacttataactcaccctgatggcaaatctcacaaaggggttttc
agcaaactgttgcagagcctccgtgacagtgggtttttgacggacgacctggtgagccac
gaggacaacggagagcagaagaagtacatgggcgtgtgccgtttgccagaccaccgccat
cgcaggctggacatcatcgtcgtgccctacaacgagtttgcgtgtgctatcatgtatttc
accgggtcggcacacttcaaccgctcaatgagagccatggcaaagacaaaaagaatgagc
ttatcggaacactcgctgaacaaagatgtggtgcgtcagggtagcttaaaggtgtttggc
ggcactccgttcactacaaagacagagaaggatgtttttagtattttaggcataccatac
agagagccccatgaaagggactggtga
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