Trematomus bernacchii (emerald rockcod): 117474786
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Entry
117474786 CDS
T09643
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
117474786 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117474786 (slx4)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117474786 (slx4)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
117474786 (slx4)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117474786 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
NPFF
DUF4238
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
117474786
NCBI-ProteinID:
XP_033976683
LinkDB
All DBs
Position
Unknown
AA seq
1629 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPGESKQPKRAEHQPSCQASDGDKRRRNTRRDVADSGSV
STAAADGEQPVVGGGTGHDAGGAEVLAVPSAAARQRAEIGLTAKDKVLHRMQQFKRASPQ
KIVYEDKSQPSHQETEPPPPLAPRQGPPESSSSPLPPDPQDGDEALALRLQQELDREAAG
VQSVDLEEGGLFFCQICHRDLSHMTPEGRTQHLNRCLDQSEESAPAPPPPPPGLPDCPIC
GKKFKSQKSRSAHLKRCSSDMGVAPAVLLQALHRQTEETPNVPATNTLTETGGNKRKGPS
IPSLRPRKKSRKKTAPLDEDTLVALALSSSLLEQEQRSERETERLLQTAAPNTSMTAALK
WRPDKGKGRGKRRKGGVPRPPPLLLVQDAQAALTRLQERVSALLLRSRPPSPPTPTRPPS
SLPGWSGAAPLWQRSSLLDGASTCEADFYTPELREFITPWDPAKKDAASSSTITRPITPV
LPVSEGAPVTGTGVSILPACTPQTAPSTPGAGQLPAGSQAVLMELMELAEDGVTLTQYGR
TAPGPDKDKSGSQITTLRLSGFVLEEPEEPADLGVSGFLPETAHTHPDAHSRARRRTDPP
GADQERQTAAQSRLTSDLSSMVNNPQLSDLQLQVDSGDVFFAHSFMVYARCPLLAEMVHE
SGFGVQEEGSPAAQRVLVNDVPGQAVLALLQYLYTARCSIPPALQPHVLELASRFDLQEL
QQLCEPEGFLNQEEDASDQMQQTLGELLRSMWDEEEDEGGDTDGGREEERELEDDHQAED
LASADREEEKVNEEELEEIYEFAATQRKREEEDSIEEEEEEEEEEEEEEEEKVEEEEGGD
DVFAELTEPEKSSAGFNEKEHLQPDPSLERSYSRLFSDSWGVYEEDPPSVPSTSGLARKH
TPQAPQAPQAPHIPSLHPSGRTLLQSSASGVEDLSPSPPPSTSTLPIPGLSPGLGGGGEE
GQTLRRESQGRRSIPVPHSLVSPQENEPELIVLSDSSEDMEVVLISRSPSPPSPYPVQTH
TYTQIKPNDPTLENKRSGSLELSLDGEPGQSPSDLFGCSPEVSWLIPSTPLQTKRVSTSS
STQTQSSMCRTQLFPKADPSSLSSFSPPALPSNDRPHTSNSPTRASSRVSPTEANALKLD
FSSRRSRSSDASKDRGVFAVPLSQPKLSISSKQGTPPHLQTSSRPYSSTPLHTELHKAPA
LLTTSPLSWTSQGKDRAPCESQEKMELGSFHLSPLSDPSDPPSSSSLGGRQRHSESSSNS
RRSVDSHSKTGSELERRGMRLEEGQGETECGNRGNEAETGEAEVAESSFRQSIMDEPPMA
FNDSWGLGACGDEDPGCFSLRLEDSGASSQGKDPPSSTERQPPPPQPQARPLFIQIHLPS
RNKRRRTLVPITPLPHYSDMDTPELKTKLNRFGVRPLPKRQMILKLKEIHQYTHQLVSSE
EEEEEAAPSAQTKPPPASSASCSQRVQFKEPQAPAAVSPVKAGREEAELLSASQGSNTSS
TAASEESERSNPELCLSSGSDSDGGLSASQSVNRLQDRLQAVRSFILSDSTLYSQILQYQ
PLVLSQLKERLKAAGIRLAAAKLVDYLDSQCITFTTAKPGPRAASRWRGKKTGTRAKAAG
RKKAVAANI
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggactttgtggacctttgctctaagcttctaaaacgagtccgc
aagaaaccaggtgagtccaaacagccaaagagagcagagcaccagccctcctgtcaggca
agcgatggagacaagaggagaagaaataccaggagagatgttgctgactctgggtctgtt
agtactgctgctgcggacggagaacagcctgtggtgggtggaggaactgggcatgatgca
ggaggggctgaggtgttagctgtaccttcagcagcagcaagacagagagcagagataggt
ttgactgccaaagataaagtcctccacaggatgcaacagttcaagagagccagtccacag
aagattgtgtacgaggacaagagccagccctcccatcaggagactgagcctcccccacct
ctggcaccgagacaaggacctccagagtcctccagctcccccctccctccggacccccag
gatggtgacgaggctctggccctgcggctgcagcaggagctggacagggaggcagcaggg
gtccagagtgtggacctggaggagggggggctcttcttctgtcagatctgccacagagat
ctgtcacacatgaccccagagggacgaacgcagcatctcaacaggtgtttggatcagagt
gaagagagcgcccctgctccccctcccccgcctcctgggctccccgactgtcccatctgt
ggaaagaagttcaagtcccagaagagtcgctcggcccacctgaagcgctgctcctcagat
atgggggtcgctccggcggtgctgctgcaggcgctgcacagacagactgaggagaccccg
aatgtccccgccaccaacacactaacagagactggtggcaataaaagaaaaggcccctcc
atcccgagcctccgaccgaggaagaagtccaggaagaagacggctcctctggatgaagac
accctggtggccctggctctgtcctcctctctgctggagcaggagcagcggagtgagagg
gagacggagaggcttctacaaacagctgcccccaacacctccatgactgcagcgctgaag
tggaggccagacaagggtaagggccgtggaaagaggagaaagggaggagtcccccgcccc
cccccgctcctcctggtgcaggatgcccaggcggctctgaccaggctgcaggaacgcgtc
tctgctctgctcctacgcagccgccccccctcgccccccacccccacccgcccccccagc
agcctgcctggctggagcggggcggcccctctctggcagaggagctccctgctggacgga
gcctccacctgtgaggctgacttctacacccccgagctcagagagttcatcaccccctgg
gacccggcgaagaaggatgcagcctcctccagcaccataaccaggcctatcactcctgtt
ctgcctgtgagtgaaggagctcctgtcacagggactggggtctccattcttccagcctgc
accccccagacggccccctccaccccgggggcggggcagcttccagcaggcagccaggct
gtcctgatggagctgatggagctggccgaagacggcgtgaccctcactcagtatggtcgc
accgccccaggcccggacaaagataagagcggcagtcagatcacgaccctccgtctgagc
ggcttcgtcctggaggagcctgaggagccggctgacctcggtgtgagcggcttcctgcca
gaaactgcacacacacatccagacgctcacagccgagcgaggaggagaacagatcctcca
ggggccgatcaggagcgccaaacagcagcacagagcagactgacctcagatctgagcagc
atggtgaacaaccctcagctcagcgacctgcagctgcaggtggacagcggagacgtcttc
ttcgctcattccttcatggtgtacgctcgatgccccctgctggctgaaatggtacatgaa
agtggttttggggtgcaggaggaggggtctcctgcagctcagagggttctggtgaacgac
gtcccgggacaggccgtgttagctctgctgcagtacctctacaccgcccgctgctccatc
ccaccggcccttcagcctcatgtcctggagctagcatccaggtttgacctgcaggagctc
cagcagctatgtgagccggagggcttcctgaaccaggaggaggacgccagcgatcagatg
cagcagaccctcggcgagctgctgcgctccatgtgggacgaagaggaggacgagggcggg
gacacagacggaggaagggaggaagagcgagaactggaagacgatcatcaagccgaggac
ctcgcatcggctgacagagaagaggagaaggtgaacgaggaagagctggaggagatctat
gagtttgcagcaacgcagagaaaaagggaggaggaagacagcatagaggaggaagaggag
gaagaggaggaagaggaggaagaggaggaggagaaggtagaagaggaagaaggtggagat
gacgttttcgctgaactgacagaacctgaaaaaagctcagcgggcttcaacgaaaaagag
catttgcaaccggaccccagcctggagcgcagctacagccgcctcttctccgactcctgg
ggggtctacgaggaagaccctccctccgtaccctccacatccggcctcgctagaaaacac
acccctcaagccccacaagccccacaagcccctcatataccctctcttcacccgtccgga
agaactttgctccagtcttcagcgagtggagtggaggacctctctcccagccccccaccc
agcacctccaccctgcccatcccgggtctgtctcctgggctcggggggggcggagaagag
gggcaaactttgaggcgagaaagccaaggtcggcgtagtattcccgttccccactcccta
gtttcacctcaggaaaatgagcctgagttaatagttttgtccgactcgagcgaggacatg
gaggtcgttcttatttcccgcagtccttccccaccgtccccttaccccgtccagactcac
acctacacccagattaaacccaatgaccccaccctggagaataaacggagtggcagttta
gagttgagtctggatggagagccgggtcagagtccttcagatctgtttggctgttctcca
gaagtttcctggctgatcccctccacgcctctccagacaaagagggtctccaccagcagc
tccacgcagactcaaagcagcatgtgcaggacgcagctgttccctaaagcagacccttcc
tccctctcatccttctctccccctgctttaccttctaacgacagaccgcacacctccaac
agtccaaccagagcttcatctcgcgttagcccgacggaggctaacgcgttaaaactggac
ttcagttctagaagaagccgctcttctgatgcgagtaaagacagaggagtgtttgcagtt
cccctgtcccaacctaagctctccatctcctcaaagcagggtacccccccccacctccag
acctccagccggccttacagcagcactcccctgcacacggagctccacaaagcccccgcc
ctcctgaccacctctccgctcagctggacgagtcagggaaaggacagggcgccatgtgag
agccaggagaagatggagcttgggagctttcatctctcgccgctgtcggacccttcagat
ccaccctcatcttcctctctcggaggccgtcagagacacagcgagtcctcgagtaacagc
cggcgctctgttgacagtcacagcaaaacagggtctgagctggagaggagggggatgaga
ctggaggaaggacaaggagagacggagtgcggaaatagaggcaatgaagcagaaactgga
gaggcagaagtcgctgagtctagcttcaggcagagcatcatggacgagccccccatggcg
ttcaacgactcgtggggtctgggcgcctgcggggacgaggaccccggctgcttcagtctg
aggctggaggacagcggggcgtccagccagggaaaagaccctccgtcctccaccgagcgg
cagcctccccccccccagcctcaggcccgccccctcttcatccaaatccacttaccatcg
cgtaataaaaggcgccgcaccctggtacccatcacccccctgccccactactcagacatg
gacaccccggagctgaagaccaaactcaacaggtttggtgttcggcctctaccaaagcgc
cagatgatcctcaaactgaaggagatccaccagtacacgcaccagctggtcagctcggag
gaggaggaggaggaggcggccccctcggctcagacgaagccccctcccgcctcttcagcc
tcctgcagccaacgagtgcagttcaaagagccccaagcgcccgctgctgtctcccctgtg
aaagccggcagagaggaggcggagcttctgtcggcctcccagggctccaacacctcctcc
accgccgccagtgaggagtctgagaggtccaaccctgagctgtgcctctcctcaggctct
gacagtgacggcggcctctctgcctcccagtcagtgaaccgtcttcaggatcgcctccag
gcggtgcgctccttcatcctctcagactccaccctctacagtcagattctccagtaccag
cctctggtcttgtcgcagctgaaggagcgtctgaaagcagcagggatccgcctcgctgcc
gccaagctggtggactacctggactctcagtgcatcaccttcaccacggccaagccggga
ccccgcgcagccagccgctggcggggcaagaaaactggcaccagggcaaaggcagcaggc
aggaagaaagctgttgcagccaacatttga
DBGET
integrated database retrieval system
