Trematomus bernacchii (emerald rockcod): 117474799
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Entry
117474799 CDS
T09643
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben02010
ABC transporters
tben04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117474799
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117474799
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tben02000
]
117474799
Transporters [BR:
tben02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117474799
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
DUF4162
AAA_29
Motif
Other DBs
NCBI-GeneID:
117474799
NCBI-ProteinID:
XP_033976695
LinkDB
All DBs
Position
Unknown
AA seq
2277 aa
AA seq
DB search
MTVSTQLGLLLWKNFTYRRRQTVQLLIEIIWPLFIFLILISVRIHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRNPTPGESPGVVGNFNDSIISRLFTDAQKILLYSQKDK
SYDGYTGLLRALRKMQENTARFKLKDFLQDNETLSHFLHNNASLPRYVLKQIVEADVNLE
KVLTKGFGFHLRDLCNTTSLEEFVHIADHNVSRQIQESICNSTSDWLDKAQSHFLSNLDF
FKPIRDVRSDPKVVQEVSAATDSLLESLGALATELASMKSWKDMRKEILYLTVNATGSPN
QMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDSDHPSSYDNTSTPYCN
NMMRSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGLLRDLGGMW
EEMRPKVWNFMENGEEIDMVRTLLQNSASAAFLNNQLSGTEWRVSDLSAFLSKVSEDKRP
AGSTYTWRNVFNETDQAILTISRFMECVNLDKLEPVANEERLVNKSMGLLHNQKFWAGIV
FPDIAHGNSTELPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSYL
QDVIEQGIIRAITGTKEKTGIYIQQMPYPCFVDDMFLRVMSRSMPLFMTLAWMYSVAIII
KGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISAGLLVVLLKMGNLLPYSDPG
VVFIFLASFGIVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAK
LIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEDDSYNLTTSISLMLFDAVLYG
IMTWYFEAVFPGQYGIPRPWYFPFTKSYWCGEKENPNISTPLSKKGNAEVCIEEEPSHIE
PGVYIENLVKVYSHGNKLAVDGLSLRFYKGQITSFLGHNGAGKTTIMSILTGLFPPTSGT
AYIHGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEEKVKAEMEQIV
NDVGLPHKRNARTHTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDYDL
ALQSCRNSASTVSYIKKAEKEDSVSESSSDAGLGSEPESETTTIDVSLISNLIFKHVKEA
RLVEDLGHEITYVLPYESAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVAED
SGVDAVELSDGVVPTRTRRHHAFGDHQSCLKPFTEDDFDFNDSEGRPSLPRVQFNESRET
DWLSGSDGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALIFS
LIVPPFGKYPSLSLDNSMYGEQFTFISNDIPEDPHINKLHSALTEQPGFGTRCMDGQPSP
DSHCTEVGDEWSAPLVSQSVKEMFDNGNWSMENPSPMCECSCEGRKRMLPECPAGAGGLP
PPEMKISETDTLQNLTGRNISDYLVKTYAQIIGKSLRNKIWVNEFRYGGFSLGARSSQLS
SHADQVDEAIAQLKRRFRLERGTAADRFFHSLSNFMQGLDTKNNVKIWFNNKGWHSIGSF
LNVMNNGILRANLPSDKDPTKFGITASNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAM
SFVPASFVVFLIQERVNKAKHMQFISGVQPLLYWLANFVWDMCNYVVPATLVIIIFMCFQ
QDSYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVST
FVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLA
WDMVGKNLFAMAIQGVVFFTITILIQYHFFFKARSSTSHLKPIGEEDEDVARERQRILNG
GGHSDILEIKELTKIYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSIFKMLTGDSTV
TGGEAYLAGKSVTSEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVA
EWGIRKLGLVKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWN
AILSIVKEGRSVVLTSHSMEECEVLCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRV
AGPDPDLRPVMEFIERELPGSNLKEKHRNMLQYQLPTSLTSLARIFSLLSQNKDTLSIED
YSVSQTTLDQVFVNFAKDQSDEDHLKDGLLHKRDAVVVDISQLNTFLKDNTTKESCV
NT seq
6834 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctccactcaactgggtttactgctttggaaaaacttcacctacagacggaga
cagactgtccagctgctgattgagatcatctggcctctgtttatcttcctcatcctgatc
tctgtccgaattcattatccaccctacgagcagcatgaatgccatttccctaacaaggct
atgccctcggcgggtacgttgccgtgggtacaaggcatcatctgtaacgccaacaacccc
tgcttccgtaatcccaccccaggcgagagtcccggggtggtgggaaacttcaatgattct
ataatctcccgtttgttcactgatgcccagaaaatcctgctctacagtcagaaggataaa
agctacgatggctacacgggactgctaagggctctcagaaagatgcaggagaacactgct
cgtttcaagctgaaggactttttgcaagacaatgagaccctttcccacttccttcacaac
aacgcctcccttcctcgttacgtgctgaagcagatagtggaggctgacgtcaacctggag
aaggtgctgactaaaggttttggcttccatctcagagacctctgtaacacaacgtccctg
gaggaatttgtccacattgctgatcacaacgtttcccgtcagattcaagaaagtatctgc
aattccaccagcgattggcttgacaaggcccagagccacttcctgtccaacttggacttc
ttcaaacccattcgggatgtgaggtcggaccctaaagtggtccaggaagtctcagcagcg
accgacagtcttctggagagcctgggagcattggccacggagcttgccagtatgaagagt
tggaaggacatgcgtaaggagatcttgtatctaactgtgaacgccacaggatctccaaac
cagatgtaccaggccgtgtcacgtatcgtctgcggacaccccgagggaggcggcctcaaa
atcaagtctctcaactggtatgaagacaacaactacaaggccctgttcggaaaccatggc
aacgacagtgacagtgaccacccctcatcttacgacaacacttcaactccctattgtaac
aacatgatgcgtagcctggagtccagccccatttcaaggatgatctggagagctctgaag
cctctgctcatggggaagatcctgtacaccccagatactccggccacacagagaatcatc
cacgaggttaataagaccttccaggaactcggcctgctgagggacctcggagggatgtgg
gaggagatgaggcccaaagtgtggaatttcatggaaaatggagaggaaattgatatggtc
aggacgctgctccagaatagcgccagtgccgcattccttaacaaccagctcagtgggact
gagtggcgtgtgtcagatttgtccgccttcctgtcgaaagtctcagaagacaaaagacct
gcaggatccacctacacttggagaaacgtcttcaacgaaaccgaccaggccattctgacc
atctcacgcttcatggagtgtgtgaacctggacaagctggagccagtagccaatgaggag
cgactggtcaacaagtccatgggtcttctgcacaaccagaagttctgggctggaatcgtg
tttcctgacatcgcccatggcaacagcactgaactgcctcccaacgtcaactacaagatc
cgcatggacatcgataatgtggagaggaccaacaagatcaaggatggttattgggacccc
ggtcccagggcagaccccttcgaggaccttcgttacatctggggcggattttcttacctg
caggacgtcatcgagcagggaatcatccgagccatcactggcacaaaagagaagacagga
atctacatccagcaaatgccctacccctgctttgttgatgacatgttcctgagggtgatg
agtcggtccatgcctctcttcatgaccctggcgtggatgtactctgtggccatcatcatc
aagggcgtcgtatatgagaaggaggcccgcctcaaagagaccatgaggatcatgggactg
aataacggaaccctgtggctgagctggttcatcagcagtttgatcccacttctgatcagc
gccggcttgttggtggtgttattgaagatgggcaacctgctgccttacagtgacccaggc
gtagtgtttattttcctggcatccttcggcattgttaccatcatgcagtgtttcctcatc
agcactctcttctctcgcgccaacctggcagccgcctgcggtggcatcatctacttcacc
ctctacctgccctacgtgctgtgtgtcgcctggcaggactacgtgggctttggagcaaaa
ctcattgtgagtctgctctctcctgtggcgttcggttttggctgtgagtacttcgccctg
tttgaggagcaaggggtgggcatccagtggtccaacttgctggccagccccctggaggac
gacagctacaacctgaccacctccatctccctcatgctgtttgatgctgtgctctacgga
ataatgacctggtactttgaagctgtgttccctggtcagtatgggatccccaggccgtgg
tatttccctttcactaagtcgtactggtgtggagagaaagaaaaccccaacatctccacc
cctctgtcaaagaagggcaacgctgaagtttgtattgaggaagaaccaagccacatcgag
ccaggtgtttacatcgagaatctggtgaaggtgtacagccatggaaacaagctggctgta
gacgggctgtccctgaggttctataagggacagattacctccttcctcggacacaatgga
gctggcaagaccaccattatgtcaatcctcacagggttgtttccacccacatctggcacc
gcctatatccacgggaaggacatccgcagcgaactcagcaccatcaggcagaatctgggc
gtctgtccgcagcacaacgtacttttcagcatgctgacagtcgaggaacacatctggttc
tacggccgtctgaaggggctgtccgaggaaaaggtgaaggcagagatggaacagattgtg
aacgatgtcggactgcctcacaaacgaaacgctcgcacccacaccctgtctggagggatg
cagaggaagctttcagtggccctggcttttgttgggggttcaaaagtggtgatcctggat
gaacctactgctggagtcgatccctacgcacgcaggggcatctgggacctgctgctcaaa
tacagacaaggccgcaccatcatcctctccacccatcacatggacgaagctgacatcctg
ggtgatcgcatcgccatcatctcccacggcaagctgtgctgcgtaggctcctccctcttc
ctgaagacccagctgggcacgggctactacctgaccctggtcaagagagactacgacctg
gcgcttcagtcctgcaggaactctgccagcaccgtgtcctacatcaagaaggccgagaag
gaggacagcgtatcagaaagcagttcagatgctggtctgggcagcgaaccggagagtgaa
accaccactattgatgtgtcgcttatctccaacctgatattcaaacatgtcaaagaggct
cgcctggttgaggaccttggccacgaaatcacctacgtcttgccctacgaatctgctaaa
gacggagcctttgtcgagcttttccacgagctggatgacagactcaccgaccttggaata
tccagctatggaatatctgataccaccctggaagagattttcttgaaagttgctgaggac
agtggagtggatgctgttgagctttcagatggagtcgttccaaccaggactcgtcgccat
catgcattcggagaccaccagagctgcctgaagcccttcactgaagacgactttgatttc
aatgactctgaaggtaggccttcactacccagggttcaattcaatgaatcccgtgagact
gactggctcagtgggtcagatggaaaaggctcataccaggttaaaggctggagtctgaag
agacagcagtttgttgctctcctctggaaacgattcctctacgctcggcgctccaggaaa
ggcttctttgctcagattgttctcccggccgtgtttgtgtgtatcgccctgatattcagt
ctgattgtccctccgtttggaaagtacccaagtctgtctctggataacagcatgtatgga
gaacagtttaccttcattagtaatgacatacctgaagatcctcacatcaacaaactacac
agcgctcttacagaacagccaggattcgggacacgttgcatggatggacaaccctcaccg
gacagtcactgcactgaagttggggacgagtggtcggcccctctggtctctcaaagtgtg
aaggaaatgttcgacaatggcaactggtctatggagaatccctcccccatgtgtgagtgc
agctgtgaaggacgcaagaggatgctccccgagtgtcccgctggagccggggggcttcca
ccaccagagatgaagatcagtgagacggacactcttcagaacttgactggcaggaacatc
tcagactatctggttaaaacctacgctcagatcattggcaagagcctaaggaacaagatt
tgggtcaacgagttcagatacggtgggttctcgctgggcgccaggagttctcagctttca
tcccatgcagatcaggttgatgaagcgatcgctcagctgaagagacgtttccgcctggag
agaggaactgcagcggatcgtttctttcatagtctctccaattttatgcaagggttggac
accaagaacaacgtcaagatctggttcaacaacaagggctggcacagcatcggttctttc
ctcaatgtgatgaacaatggcatcctgcgggccaatctgccatccgacaaagaccccact
aagtttggcatcactgcctccaatcacccgctcaacctcaccaaggagcagctgtcccag
gtcgcattgatgacgacatcagtggacgtgctggtttccatctgcgtgatcttcgccatg
tcctttgtccctgccagttttgtggtcttcctcatccaagagagagtaaacaaagccaag
cacatgcagttcatcagcggagtgcagcctctactttactggctggccaactttgtctgg
gatatgtgtaactacgtcgtcccagccacactggtcatcattatcttcatgtgtttccaa
caagactcctacgtctcctccaccaatctgcccgtgctggcgctgctgctgctgctctac
ggatggtccatcacccctctgatgtacccggcctcgttcttctttaagatccccagcacg
gcctacgtggttctgaccagcgtgaacatactgataggaatcaatggcagcgtctccaca
tttgtactggagctgtttggaagcaatgaaatcggtggcatcaacgacatcctgaagaac
gtgttcctcatcttccctcacttctgtctgggcagaggactgatcgacatggtgaagaat
caggcaatggccgacgctttggagagatttggtgaaaaccggttccgctcccctctggcc
tgggacatggtgggcaagaacttgtttgcaatggctatacagggagtggtcttcttcacc
atcaccatcctcattcagtaccacttcttcttcaaggccaggtcttccaccagtcatctg
aagcctattggagaggaagacgaggacgtggccagagagcggcagaggatcctgaacgga
ggaggacattcagacatcctggagatcaaagagctcaccaagatctacaagaggaaacag
aagccggcagtggatcggctgtgtgttggcatcccccccggagagtgttttggattgcta
ggagtgaatggggcagggaaaaccagcatctttaaaatgctgacaggagactccacagtc
accgggggagaggcctacctggctggcaagagtgtgacttcagagatagacgaggtgcat
cagaacatgggctactgtcctcagtttgatgccatcaacgacctgctgaccggcagagag
cacctcgagttctacgccatcctgaggggagtgcccgagaaggaagtctgcgaggtggca
gagtggggcatccgtaagctgggtttggtcaaatatgtggacaagtcagcaggcagctac
agtggaggcaacatgaggaaactgtctactgccatcgctctcataggaggaccgcctgta
gtctttttggatgaaccaacgacaggcatggatcctaaagcacggcgcgctctgtggaac
gccatcctgagcatcgtcaaggagggacgatctgtagtcctgacctctcatagcatggag
gagtgtgaagtgctttgcaccagaatggccatcatggtcaacggcaggttccgctgtctg
ggcagtgtgcagcatctcaaaaacaggtttggggatggctacaccatcatcctgcgggtg
gcgggcccagacccggacctccggccggtgatggagttcatcgagcgggagctcccaggc
agcaatctgaaggagaaacacagaaacatgctgcagtaccagctgcccacctccctcacc
tcgctcgcccgcatcttctccctgctctctcagaacaaggacaccctgagcatagaggac
tactccgtctcacagacaactttagaccaagtgtttgtcaatttcgccaaggaccaaagt
gatgaggaccatttgaaagacggccttctacacaaacgggacgctgtggtagtggacatt
tcacagctgaacactttcctaaaggacaacacgaccaaggagagctgcgtctga
DBGET
integrated database retrieval system
