Trematomus bernacchii (emerald rockcod): 117474821 Help Entry 117474821         CDS       T09643                                  Symbol polq Name (RefSeq) DNA polymerase theta isoform X1   KO K02349   DNA polymerase theta [EC:2.7.7.7] Organism tben  Trematomus bernacchii (emerald rockcod) Brite KEGG Orthology (KO) [BR:tben00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:tben03400]     117474821 (polq) Enzymes [BR:tben01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.7  DNA-directed DNA polymerase      117474821 (polq) DNA repair and recombination proteins [BR:tben03400]  Eukaryotic type   Other factors with a suspected DNA repair function    DNA polymerases     117474821 (polq) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_pol_A POLQ_helical HTH_61 DEAD Helicase_C ResIII DUF7898 Helicase_dom4_arc DUF4332 HHH_5 Motif Other DBs NCBI-GeneID:  117474821 NCBI-ProteinID:  XP_033976722 LinkDB All DBs Position Unknown AA seq 2801 aa AA seqDB search MSTSGPSLKKKSYMGQHQIKKKSFHAPDDPPDGDTLLQKPDKTNISRTDGGAGFPLGEST LALDEEMLQVLDAVDPVKPAITTACPTTGNRNAQEEAASSAALAPVRTDRAPQPGGLTLP HRAPGPQGRVCGGSGESNRPGWRSDCKNLAQRLLFSEDSEEAGCAQRGPDNTKAPPASAC INGLSGQEIKNSRQVGNSTNRQARTHRRKNSPGSNNQSVSNMNADPSPDGSRDYILFSPT HLAANMKKAKLQSSLQNHSVLTVPSGLDLTTLNDTLPQPGVALCAPAGQAEKLLLCSWGL PKPVLERYQKHGVTHMFEWQAQCLTVGQVLQGGNLVYSAPTSAGKTLVAELLMLKRVLET KRKALFILPFVSVAKEKMHYLQSVFEEAGVRVEGYMGSTSAAGGFSKLDVAVCTIEKANS LVNRLIEEDNMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYISQKQNTTGSLSEGVQI IGMSATLPNLSLLAGWLGAELYQTDYRPVPLLEHFKVGCNIYDKSLSVVRKFTPLPHIKG DDDHIVSLCYETVREGRSVLLFCPSKNWCEKLADSIAREFYNLRNAGGQGEAEPQAVRLD RDGLVDVVAQLRRTPAGLDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQCTVRVLAAT STLSSGVNLPARRVIIRSPTFNGHMLDPLTYKQMAGRAGRKGVDTIGESVLVCKEIERQK GITLLTGTLQPISSCLVRREGEGVTTSMLRAILEIIVGGVASTPQDVRSYALCSLLAASI KCDGKKESTEETNKGAIEASVEWLMENEFISIQKEGQEERYCPTQLGAATLSSSLSPPEA LGIFADLQRAMKGFVLENDLHILYLITPLYAEWTTIDWYQFFCLWEQLSSSMKRVAELVG IQEGFLARSVTGKLVAKTEKQRRQMAIHKRFFTTIVLHDLVNEVPLGTVASKYNCNRGQL QSLQQSASTYAGMVTVFCKRLGWHNMELLLSQFQTRLSFGVQRELVDLVRVSLLNATRAR AVYAQGLCTVAELARATVADVEKALRNAIPFKSSKRAVDESEVEAAERQSLRCVWVTGGR ALTEQEAAVEIVSEARLLLQEDLARLGVQWDPTTLPPGAPAVNSPGDSDTSTASDLSSHE AQVDDNKDPQQGDKIEKSRDIERHGEESEEKNKREKGMSERKMEEEKDKREQGSKFQVRV VNRKPEEHRQLNRTDNRKTMNGVQVERSKGTKNDETNDKILTANNTEDPDEKRERQKQTR PKQGGEEQKKSEQKEGEKSKSEIVSIRPESPQANRPVPERSLTQELADIISSPLPLPMLR PQPSLSPMPPPRFRAPVSRVEEQHIVPVRTSDGLAASPVHPRRLKHSRALSKVLNSIQTD KSLQNNVAPAETSHSIPSAPAGQVTSAVSVPDPLEKTPPGISSPSDADMLDNPLIVSPAS VPLFSPEAKRRRMDGGEVDTFSSPELYAGEAEGDVKKGEESFGDSFELDTQTERMIVQPA FQHRDGIDRGTSQTVETEMIEDVIKTAVEINQDKSEGHLEAPVDACPRFNVSITDSEMEL ILNTSNQVSIQNNPFFYSYIIYTFKWFKNQILFLQNSPGPWGDNVVEDKDEGGDEEAASE SVNRSSSFLFDSLYDSSLLAGLDQSDEEEPVGQEIINPLPSSQERRRSELLANQEAENQE AVQWGESSFNLSEWGDSLMVGEHFLERQSLLKHTERAQGATRQKAQQPNTDNVQMSESQP RLRQTKPQPTTTTTTTNQNEHDKENASNNQGNKHTNKQHSYAQSDNKPGKRQETINEQGE NGKQGETHVKKGEINAVLLDKAVLNHSEVQNAPESCFDCSPGLQDIFDRWPSMSDQPWQN TITGHLTTHTLKHAANTAEVPDPPQTSIQVERKGAKSKAVVAENDSREEQPSRRDSENVT ERPGSAGDLIPPTQETPPVTPRVKMTTSSVQSPLIAKPIKQSTPSTRLLQKQVITKCPTS GPGHSRDLSEADTEQPNSTSDRSHEHQRGQKPNTVTRSRARTKLLLHSDQNLSPPGGPAS PPPRVKLPSDAESPVTDEGFSLQLSQDTSLGSSSSGAFSIVDVASDRRLFNTFINEWKTK ERYSLALACEKREHSNQTEEEIGGKHKRASAANQRLHRDDGFPIIDRDGLVLIGLSVCWG ARDAYYVSLQQEQSKGLSASLAPPPLDDDLPVSERLQQVKAGLSRTPTAPTGGVVVTWDI IQVYKTLVMSCGISLEGNCEDPKVACWLLDPGSEERTLPNMVTVYCPEELPLLGGLGNPH AHDPRVRAATKSVLVLAVMNHLTGLLEKDGMLDLFRSIEMPSQVSLALLELNGVGFSVEE CERQKHVMQAKLSALESQAYNLAGHSFSLTSIDDIAQVLFLELHLPPNGDVGGSKSKKTL GYTRRGGGRVRLGKQFSTTKDVLEKLRPLHPLPGVILEWRRITNALTKVVFPLQREKQYH NTLAMDRIYPIAQTHTATGRVSFTEPNIQNVPKDFEISMPTVVGESPPSQDGKTGKKRRS AVASEQGPAFCVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGGADVFR CIAAEWKSIDPESVNDNLRQQAKQICYGIIYGMGAKSLGEQMGVEENDAACYIESFKARY KGINAFLRETVKNCIKNGYVQTLMGRRRYLPEITNSNAHVKGHAERQAVNTTVQGSAADI VKLATVNIQKRLRKTYPAAPLSHQHTHSASSNRRVRTSPLRGAYFVLQLHDELIYETTEE DLIQVAHIVKREMESAVKLYVKMKAKVKVGPSWGNLQDLDI NT seq 8406 nt NT seq  +upstreamnt  +downstreamnt atgagcacctcaggtccttcgctgaaaaagaagagctacatggggcagcaccaaatcaag aagaaaagtttccatgctcctgatgatccaccagacggagacacactgttgcagaaaccc gacaaaacaaacattagccgcacagatggaggagcagggtttccactgggggaatccact ttagctttagatgaagaaatgcttcaggtgttggatgctgtagatcccgtgaagcctgcc attaccactgcatgtccaacaacaggaaacagaaatgcacaggaagaggcagcatcatca gcggcattggcccctgtacgtactgacagagcacctcagcccgggggccttactttaccc cacagagcccccggcccccagggaagagtctgtgggggtagtggtgaatctaatagacca ggatggagatctgactgcaaaaatcttgcacagcggcttctcttcagcgaggactctgag gaagcggggtgtgctcagaggggcccagacaataccaaggcacccccagcttctgcctgc atcaatgggctttccggtcaagaaataaaaaacagtcggcaagtaggcaactccacaaat aggcaggcacgtactcacagaagaaaaaactctcctggtagcaacaaccaaagtgtgtca aatatgaatgctgatccatctccggatggttcgagggactacatcttgttcagccccacc cacctcgcggctaacatgaagaaagccaaactccagtcgtcattacagaatcactctgtg ctcacggtccccagtggtttagacctcactactctgaatgacactttacctcagccaggc gttgccttgtgtgctcccgcgggacaagctgaaaagctgctgttatgcagttggggctta ccaaaacctgtcctggagcgctaccagaaacacggagtgactcacatgttcgaatggcag gctcagtgcctcactgttggacaggttctgcagggaggaaacctggtatactctgccccc accagcgctggaaaaactctggtcgcagagctgctgatgttgaagcgtgtattagagacc aaaagaaaagctctcttcattcttccatttgtctctgtggccaaagagaagatgcactac cttcagagtgtttttgaagaggctggagttcgtgtggagggatatatgggcagcacctcg gcggctggagggttctcaaaactggatgtggctgtttgcaccatagaaaaagccaattct ctcgttaacagactcattgaagaggacaatatgggtctactaggtatggttgtggttgat gagttgcatatggttggagattctggaagaggatacctactggaactactcttaaccaaa atccgttacatttcgcagaagcagaacaccactgggtctctttctgagggtgtacagatc ataggtatgagcgccaccttgccgaacctctccctcctggccggctggttgggtgcagag ctttaccagaccgactacagacctgtgcccctgctggagcatttcaaggtgggctgcaac atctacgacaagagcctctctgtggtccggaagtttactcctttaccccacattaagggc gatgatgaccacatagtgagcttgtgctatgagactgtgagagagggccgctctgtgttg ctgttctgcccctcgaagaactggtgtgagaagctggcagacagcatcgccagagaattc tacaacctcagaaatgctggtggtcagggcgaagcagagcctcaggcagtgcgtctggat cgggatggattagtggatgttgtagcccagctgagaagaactccagctggtttagacccc atcctccagagaactgtgccatggggggtggccttccaccacgctggtttgacttttgat gagcgcgatgtgttggagggagcttttcgtcagtgcacggtcagagtcctcgctgccacc tctaccctctcgtcaggggtcaatctccccgctcgcagggtcatcattcgatcccctacc ttcaacggacacatgttggacccgctcacgtacaaacagatggccggacgagcagggaga aaaggagtagacactataggtgagagtgtgctggtgtgtaaggagatagagcgtcagaaa ggaattactctccttacgggtactcttcagccaatcagcagctgcctggtgagaagagag ggagagggcgtcaccaccagcatgctgagagccatcctggagatcattgtcggaggtgta gccagcacgccacaggatgtgaggtcatatgctttgtgctcacttctggctgccagcata aaatgtgatggcaaaaaagaatcaactgaagagaccaacaaaggcgctattgaggcctct gtagaatggctgatggagaacgaattcatcagtatccagaaggaaggacaagaggagcgg tactgtccgacccaactaggtgctgccaccctctcctcctccctctcccctcctgaggct ctgggaatatttgcagatctccagcgggctatgaagggcttcgtactggaaaatgacttg cacattctgtatctgatcaccccgttgtacgcagagtggacaaccatagattggtaccag ttcttctgtctgtgggaacagctctcgtcatcgatgaagagagtagcggagctggtgggc atccaggaaggcttcctcgcaagatctgtcacaggcaaactggtcgccaagacagagaag cagcgtagacagatggccatacataaacgattcttcaccaccattgtgctacatgatctg gtgaatgaggtgcctttgggaacagtggcttccaaatacaactgcaatcgggggcagtta cagtctcttcagcagtctgcttctacgtatgcaggtatggtaacagttttctgcaagcgt ctgggctggcacaacatggagctgctgttgtcccagttccagaccaggctgagcttcgga gtccagagggagctggtggacctcgtcagggtttctctcctgaacgccacacgagccaga gcagtgtacgcacaaggcctctgtactgtcgctgagctcgccagggctactgtagctgat gtagagaaagccttgaggaatgctatcccttttaagagctctaagcgtgcagtggatgag agtgaggtggaggcagcagagagacagagcctccgctgcgtctgggtcaccgggggtcgg gccctgacggaacaggaggccgccgttgagattgtttctgaagcgaggctcctccttcag gaagacctggcccgcttaggagttcagtgggacccgacaacccttcctcctggagctcct gccgtaaacagccctggcgactcagacacctcaactgcatcagatttgagctcacatgaa gcacaggttgacgacaacaaagatccccagcaaggagacaagattgagaaaagcagagat attgaaagacatggagaggagagtgaggagaaaaacaaacgtgagaaagggatgtctgaa aggaaaatggaggaagaaaaagacaaaagagagcaggggtcaaagttccaagtcagggtg gtaaacagaaaaccagaggagcacagacaattaaataggacagacaacagaaaaactatg aatggagtgcaagtagaaagaagcaaaggtacaaaaaatgatgagacaaatgacaaaata ttaacggcaaacaatacagaagatccagatgaaaaaagagaaaggcaaaagcagacgagg ccgaagcaaggtggggaagagcagaagaaatccgagcaaaaagaaggagagaagagtaaa tcagagattgtctcaatcagaccagagagtcctcaggccaaccgtcctgtccctgaaagg agcctgacccaggaattagctgatatcatatccagccccctgcctctaccgatgctacgt cctcagccctctctctcccctatgcctcctcctcggttcagagctccagtatcacgagta gaagaacaacacatcgttcctgtaaggacatcagatggccttgctgcctcacctgtgcac ccacgtagactgaagcactcgagagccttaagcaaagtcctcaactctatacaaactgac aaaagcctacaaaataacgtagcgcctgcagagacatcacactcaataccctcagcgcct gcaggccaggtgacttcagcagttagtgttcctgaccccttggagaaaacccctcctggt atttcttcaccttcagatgcagatatgttagacaatcccctcattgtctctcccgcctct gttcccttattctctcctgaggctaagcgaagaaggatggatggtggagaggtagatacc ttttcatctcctgagctgtacgcaggagaagctgagggagatgttaaaaaaggagaggag agtttcggtgacagctttgaattggacactcagacagaaagaatgattgttcaaccggca ttccaacacagagatgggattgatagaggtacgagtcaaacagtagaaacagaaatgata gaggatgtgataaagacagctgtagaaatcaatcaggacaaaagtgagggacatcttgaa gccccagttgatgcatgtccaagattcaatgtttctatcacagatagtgaaatggagctc attctcaacaccagcaaccaggtgagtatccagaataatccattcttttattcttatatt atatacacgttcaagtggtttaaaaatcaaatattgtttttacagaattcccctggtcca tggggggataatgtagtcgaagataaggatgaaggcggcgatgaggaggctgcctctgag agtgttaacaggagcagtagcttcctgttcgacagcctgtacgacagctctctgctggct ggtctcgaccaatcagacgaagaggagcctgttggccaggagatcataaaccctcttcca tcgagccaggagcggagacgcagtgagcttctcgcaaatcaggaggctgaaaatcaggag gcggtccaatggggcgagtcctccttcaacctgtcagagtggggcgactcgctgatggtg ggggaacactttctggagaggcagagcttgctcaaacacacagagagagctcaaggggcc actcgtcagaaagctcagcaacccaacacagacaatgttcagatgtcagaatcacaaccc agactccgtcagacaaagccacaacccactactacaactactaccacaaatcaaaatgag catgacaaggaaaacgccagtaataatcaaggcaataaacacacaaataaacagcatagt tatgcacagagtgacaataaaccaggcaagagacaggaaacaatcaatgaacagggtgaa aatgggaagcaaggagagacacacgtaaagaaaggagaaataaatgctgtcttgttagat aaggccgttttaaatcactcagaagtccaaaacgcacctgaaagctgttttgactgcagc cctggtttgcaagacatctttgaccgctggcctagtatgtctgaccagccctggcaaaac actataaccggccacctgacaacccatacactcaaacatgctgcaaatacagcagaagtt ccagatccacctcagacctcaatacaggtggagagaaaaggagcaaagtcaaaagctgtt gttgctgagaatgattctcgggaggaacaaccctcaagacgtgacagtgagaatgtaacg gagagaccaggctctgccggtgatcttattccccctacgcaggaaactccacctgtcaca ccaagagtaaaaatgacgacgtcatctgtgcagtcacctctcatcgctaagccaatcaaa cagtcgactccctcaactcgactgctacaaaaacaagtgatcacaaaatgtcctacatct ggcccgggacacagtagagatctatcagaagctgacactgaacagcctaattctacatca gatcgctcccacgaacaccagcggggacagaaacccaacactgttacacgctcgagggct agaacaaaactcttgctacacagtgaccagaacctaagccctcccggaggtcctgcttcc ccgcccccccgggtgaagctcccctctgatgctgaatcacctgtgactgatgaaggcttc tcacttcagctgtcccaggatacatcgctcggttctagcagctcaggggccttctccatt gtagacgtggcaagtgacaggcgcctcttcaacactttcatcaatgagtggaaaacaaag gagcggtactctctggctttggcctgtgagaagagggagcacagtaatcaaactgaggag gaaataggagggaaacataagagagcatcagcagctaaccagaggctccacagggacgat ggttttccaataatagacagggatggactggtgttgattggactgtctgtctgctggggg gcaagagatgcctactacgtgtctctgcagcaagagcagagcaaaggtttgagcgccagt ctggcccctccccctctggatgatgatttgccagtgagtgagaggctgcagcaggtgaag gccggtctgagcaggacgcctacagctccaacaggaggtgtggtcgtcacgtgggacatc atccaggtgtacaagacgctggtcatgagttgtggcatcagcttggagggaaactgtgaa gatcccaaggttgcgtgctggctgttggaccctggcagtgaggagaggactctacccaac atggtgacggtctactgtcctgaagagttgcctctgctgggcggacttggaaacccgcat gcacacgatcctcgtgttagggcagcaaccaagagcgtgctcgtactcgctgtcatgaac catctgaccggcctgctagagaaagacggcatgcttgacttattcagaagcattgagatg ccctcgcaggtgtctttggctctgttggagctgaatggagtgggcttcagtgttgaagag tgtgaaaggcaaaagcatgtgatgcaagccaaactctcagcgctggagtcccaggcctac aacctggccggacacagcttctccctcaccagcatcgacgacatagcacaggtgttgttt ttagagctgcacctgcctccaaacggtgacgtaggtggatccaaaagtaagaagactctt ggctacaccaggcgaggcggcggcagagtacgacttggaaaacagtttagcaccaccaag gatgttctggagaagcttcgccctctgcacccgttgccaggtgtgatcctggagtggagg cggatcactaacgccctgaccaaggtggtgttccccctgcagcgggagaagcagtaccac aacacactggccatggacagaatatatcccatcgcccagacacacacagccacaggtaga gtgagcttcactgagcccaacatacagaatgtccccaaagactttgagatttccatgccc acggtggtgggggagagcccaccttcacaagacggcaaaacaggaaagaaaagacgctct gcggtggcctcagaacaaggcccggccttctgtgtcagcatgaggcatgccttcgttccc ttttcaggtgggatgatattggcagctgattattctcagctggagttgagagtgttggct cacctctctaaggatcaacgcctactgcaagtgctgaatggaggagcagacgtgtttcgc tgcatcgctgccgagtggaaaagcattgaccccgagtctgtgaacgacaacctccgacaa caggccaaacagatttgctatggcattatctatgggatgggagctaagtctttgggggag caaatgggagtggaggagaacgacgcggcctgctacatcgagagttttaaggctcgatac aaagggatcaatgcttttctgagagaaactgtgaagaactgtataaaaaacggctatgtt cagacactgatgggccgcaggaggtacctacctgagatcactaactccaatgcgcacgtc aaagggcatgcagagcgtcaggcagtaaacacaactgtgcagggttcagcagcagacatt gtgaaacttgccaccgtgaacatccagaaacgactacgaaaaacatatcctgcagctccc ctctctcaccagcacacacattcagccagcagtaatcgcagggtgcgaacatctccactc agaggagcctactttgtactgcagctgcatgatgagctcatctatgaaaccacagaggaa gacctcatacaggttgctcatatagtgaagagggagatggagtcggcagtaaaactgtac gtaaagatgaaggccaaagtcaaggtgggacccagctggggcaacttgcaggacctagat atataa

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