Trematomus bernacchii (emerald rockcod): 117475035
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Entry
117475035 CDS
T09643
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117475035 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117475035 (polr1a)
Enzymes [BR:
tben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117475035 (polr1a)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117475035 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
117475035
NCBI-ProteinID:
XP_033976983
LinkDB
All DBs
Position
Unknown
AA seq
1691 aa
AA seq
DB search
MLFSKEVPWRRLEGLSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNNCPGHMGHVELPLPVYNPLFFDKLYLLIRGSCLSCNMLLCPRAAMHLL
LSQLRLLDHGNMQEVYQAEQVLSKHLEENPKATGDEIQLVLTQFTDSIVGVNTEGSANTK
PIKHLVEKKYSLINDFWRIHMKSRKCPYCSTGKFTVRREHNSKLILTMPSGAKTIGNTDE
DLAGKRVYLTASTAREHSNKLWAKEGFFLKCLFSGVEEGKLSLAAEEGFYSDLFFLELLV
VPPCRYRPINRIGDQMFTNGQTVNMQAVMKDSAIIRKLLALIAGEKIDKEEETPEQMDQA
FLTGIPGLTVTDKLYNIWVRLQTHVNIVFDSDMDKMTSEKYPGIRQILEKKDGLFRKHMM
GKRVDFAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPFNVKELRQAVLNGPNVHPG
ASMVINEDGRRTILSPTSLVQREAVAKQLLTPCDGPHKIPIKIVNRHIKNGDVMLLNRQP
TLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAEAYTLVST
DQQYLVPKDGTPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPSA
IIKPQQLWTGKQVVSTLLLNVIPQNAVPLNLVGKSKIPSKAWIQVPPRAAPGYKPDSMCD
SQVVIRQGELLVGVLDKAHYGSSSYGLVHCCYELYGGATSGKLLSCLARLFTAYLQLFRG
FTLGVEDILVKPGANRQRKKIIQESLKIGTKALQAAFNLPPNVDYAEAQSRWQDAHLNPD
QKDFSTADHKFKEVANQVNNEINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISC
LLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFISGRFLTGIKPQEFFFHCMAGREG
LVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTPFLQE
RQFAFIEDNYEVIRRLQGLDEVLPRLDPHSAARHFASIQRWKAKREVACPRKGAFLLYSQ
KKLAHLEQTEQGGEPDVCGRKASILQLIQQWQALDDSSRSKYSRKSSRCPEPSLGQLRPD
VCFGSVSENFHSITEKYLQSEGRRKQDSIDTNSLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMRVPVLNTKRALKRA
KTLRKKLTRVCLAEVLQKVDVVETLRIENHLKLRTFKVTFNFLPPDRYSEDKLLTPHQIL
YFMENRFFRLLLDAIKKRSAKLASIAVETRKASLRDKDNDAEGTADNAGLDDVEVEEERE
IVDDQANEGDADASDAKRKDKQQEEVDYESEEEDKGEEDKEDQDEEEEEEEEAEGESEES
QPESGRVTSERRKKQISKQVEEEEEDPLDLMRINFVLQSNPAIERYSYDAESELWCEVDL
VLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRCLLSEVTTKTGEKETLFNTEGINMHELF
KHSDILDINRLYSNQVQAMAQTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMC
FEGIYKPLNRHAIRSNSSPLQQMTFETSFKFLKQATMLGSHDELVSPSACLVAGKVVKGG
TGLFDLKQPMQ
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttagtaaagaagtgccatggcggcggctggaaggcctgtcgtttggcatgtac
tcagctgaagagataaggaagctgagtgtgaagacgatcactaacttcaggttcctggat
gccgttgggaatgtggccccaaacagcctgtacgatctggccctgggtccagcagacaac
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtcccggtcacatggggcat
gtggagctacctctacctgtttacaacccgctgttctttgataaactgtacctgctgatc
cgtggctcgtgtctctcatgtaacatgctgctgtgcccccgcgccgccatgcacctgctg
ctcagccagctgcggctgctggaccacgggaacatgcaggaggtgtaccaggcggagcag
gtcctcagcaagcacctggaggagaaccccaaagccacaggagatgagatccagctggtg
ctgacgcagtttacagacagcatagtcggagtaaacactgaaggctcagcgaacaccaaa
ccgatcaaacaccttgttgaaaagaagtacagtttgatcaatgacttctggaggatccat
atgaaatctaggaagtgcccttactgcagtactggcaagtttacagtgcgccgtgaacac
aacagtaagctgattctcacaatgccatcgggagcaaagaccattggcaacactgatgag
gatctggcaggaaagagagtgtacctgacggcgagtactgccagagaacacagcaacaag
ctgtgggcgaaagaaggtttcttcttgaagtgcctgttctcaggagtggaggaggggaag
ctgtcactggcagcagaggaaggtttctattctgacctcttcttcctcgagctgctggtg
gtcccaccctgcaggtatcgtccaatcaatcgcatcggtgaccagatgttcaccaacggt
cagacagtcaacatgcaggcggtaatgaaggacagtgcaatcatccggaaactgctggct
ctcattgcgggggagaagattgataaggaggaagagactccagagcagatggaccaggcc
tttctgacggggatccccgggctgacggtcacagataaactctacaacatctgggtgcgg
ctgcagacacacgtcaacatcgtctttgacagcgacatggacaaaatgacgtcggagaaa
taccccggaatcagacagatcctggagaagaaggacggactcttccggaaacacatgatg
ggcaaacgagtggacttcgctgcacgatcagtcatctgtcctgacatgtacatcgagacc
aacgagatcggcatccctatggtgtttgccaccaagctgacatacccccagcccgtcacc
ccctttaacgtgaaggagctccgccaggccgttctcaacgggcccaacgtccaccccggg
gcgtcgatggtgataaacgaggacggccggagaaccatcctgtcccctaccagcctcgtg
cagagagaagccgtcgccaagcaactgctgacgccctgcgacgggccgcataagatcccc
atcaagatcgtgaatcgtcacattaagaacggagatgtgatgttactgaaccgacagccc
actctgcacagaccctccatacaagcccactgtgctcgcatcttaccgggagagaaggtt
ctgaggctccactacgccaactgcaaagcatacaacgccgactttgacggtgacgaaatg
aacgctcacttccctcagagcgagctggcccgagccgaggcctacacgctggtcagcacc
gaccagcagtacctcgtccccaaggacggtacacctttagcaggtctgatccaggaccac
atggtgtcgggtacgaggatgacgatacgtggctgtttcttcaccagagtgcagtacata
gagctggtatacagaggactgactgacaaaccaggcagagtcaaactgctgccgtccgcc
attataaaaccacagcagctatggacagggaagcaggtggtttccacactcctgctgaat
gttatcccacagaacgccgtgcctctcaatctggttggaaaatccaaaatccccagcaaa
gcgtggatccaagtcccaccccgagctgccccaggatacaaacctgacagcatgtgtgac
tcacaggtggtgatccgtcagggcgagctgttggtgggggttctggacaaagctcactac
ggctcctcatcctacggtctggtccactgctgctacgagctttacggaggggcgaccagc
ggcaagctgctcagctgcctggctcgactcttcactgcgtacctgcagctgttcagaggt
tttactctgggtgtggaagacatccttgtgaaaccgggcgccaacaggcagaggaaaaaa
atcattcaagaatcactgaagattggcaccaaagccctgcaggcagccttcaacctgccc
cctaacgtggactacgctgaggctcagagccgctggcaagacgctcacctcaaccccgac
cagaaagacttcagcacggccgaccacaagttcaaagaagtggctaaccaagtgaacaat
gaaattaacaaggtgtgcatgccagtgggactccacacgtctttcccagacaacaacctc
caactgatggtccaatcaggagccaagggctctactgtaaacaccatgcagatttcatgt
ttactaggccagattgagttggagggccgtagacctccactgatgccttctgggaaatct
ttgccgtgcttccagccctatgaccctgcccccggcgcagggggctttatttccggaagg
ttcctcactggcatcaaaccacaggagtttttcttccactgtatggccggcagagaggga
ctggtggacacagctgtgaaaacatctcgatcaggatacctgcagagatgtgtcataaag
catctggagggtttggtggtgcagtatgatctgacggtgagggacagcgatggctcggtg
gtgcagttcctgtacggtgaagacggactggacatccccaagactccgttcctgcaggag
agacagttcgccttcatagaggacaactacgaggtgatcaggaggctgcaggggctggac
gaggtgttgccccgcctggaccctcactctgccgctcgacacttcgcctctatccagcgc
tggaaggccaagagagaggtggcctgtccacgcaaaggagcgttcctgctgtattctcaa
aagaagttggcccatctggagcagacggaacaaggaggagagccagatgtctgcggccga
aaggcttctatactacagctcatacagcagtggcaggctctggatgattccagcagatcc
aagtacagcaggaagtcctcccgctgccccgagccctctctgggccagttacggcccgac
gtctgcttcggatcggtctctgaaaacttccacagcatcacagagaaatacctgcagagc
gaaggaaggcggaaacaggacagcatcgacacaaacagcctccgtcagctgctgcactac
aagtggcagcgctcgctgtgtgacccgggtgaagcagtgggtctgcttgcagctcagtct
ataggggagccctccacccagatgaccctcaacaccttccactttgccggcagaggagag
atgaacgtgactctgggaatccctcgactgagggagatcctgatggtggccagctccaac
attaagactcccatgatgagagttcctgtgctaaacaccaagagagccttgaagagagcc
aagacgctgcgcaagaaactcaccagagtctgcctggctgaggtgctgcagaaggtggat
gtggtggagacgctgcggattgaaaatcacctcaaactgcggactttcaaagtcaccttc
aactttctgcctcctgaccgctactctgaagataagctgctcacaccacaccagatcctg
tacttcatggaaaataggtttttccgtctcctgctggacgccattaagaagcgcagcgcc
aagcttgcctccatcgccgtggaaacaaggaaggcctctctccgagataaggacaacgat
gcagagggcaccgctgacaacgcagggctagacgacgtggaggtagaagaggagcgagag
attgttgacgaccaggccaacgaaggagacgccgacgcatcggacgccaaacggaaagac
aaacagcaagaggaggtggactatgagagtgaggaagaggacaaaggcgaggaggataaa
gaggaccaggacgaggaggaggaggaggaggaggaggcagaaggtgagtcggaggagtcc
cagcccgaatctggtagagtgacatccgagaggaggaagaaacaaatatcaaaacaagtt
gaagaggaagaagaggaccccttggatctgatgaggattaactttgttctgcagtccaac
ccggccatcgagagatacagctacgatgctgagagcgagctgtggtgtgaggtggacctg
gtgctgccggtgagcaaggtgcactttgacctgacttcagtcctgtcaacactggctcag
aacgccgtcatcatggaaaccaaaggcctgacgcgctgcctgctgagtgaagtcaccacg
aagacgggagagaaagagacgctcttcaacacggaaggcatcaacatgcacgagctgttc
aagcacagcgatatcttggacatcaacagactctactccaatcaggtccaagccatggct
cagacctacgggatcgaagtggctctgaaggtcatagagaaggagatcaaagacgtcttt
gctgtctatggtatcgaggtggacccccggcatctgtcactggtggcagattacatgtgt
tttgaaggaatatacaagcccttaaaccggcacgccatccgctccaactcctcccctctg
cagcagatgaccttcgagaccagcttcaaattcctcaaacaggctaccatgctggggtca
catgatgagctggtgtcaccctccgcctgcctggtggcggggaaggtagtcaaaggtgga
actggactgtttgatctcaaacaacctatgcagtga
DBGET
integrated database retrieval system
