Trematomus bernacchii (emerald rockcod): 117475159
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Entry
117475159 CDS
T09643
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117475159 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117475159 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117475159 (pcdh20)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117475159 (pcdh20)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117475159 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Hint
Motif
Other DBs
NCBI-GeneID:
117475159
NCBI-ProteinID:
XP_033977195
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MGNGTPINMSWVGLMQILLVVVHLQQIICGSVRFSIPEEQGPGVLVGSLSEHFPPPYQLL
TQKYLWMDKNTGDFYTTEEKMDREALFPEETKTEECIILHNAVVGPSGDLIQFAVIIEDI
NDNAPHFENSEIHLKMSEDVSVGTSFLLDDQALDRDAGYNSELSYQLEDFDGVFSLTVED
GPVIMLVVQTALDRETQDMYQMTLVATDRGTGSLSATATLIVTVTDVNDNCPSFSPDSPR
SVSIPGDSPKNMLVAQVRATDPDSGLNAAIVYSLSPKVSEQAKNLLSLDSLTGSIRLTQD
LQSDSSKELLLKVLASGHHCPPADTQVTVSVLPKANQELAIKIGFIVEHQNETMVLPENQ
PPTVLAVLELEGDSRFEGSSIAIEGEVPFTLSPQNGKYLLSTSKALDYEMKREHHTFVVV
HAEGSVITHSRRAIRVLVADVNDNAPIFVQSHYKLEVEENNQPGMSLLKVLATDADSGYN
GRVTYSLDKHTSSIFNIDPNTGQLSVSAILDRERQDAHTLTVFAEDSGSPPLESAATVSI
QVLDQNDNAPVFITPHFIFFMPENVKLFAQVGRVKVTDPDEGANGNTELHVVSSSGPFVL
DNTLGTLHTTTDLDRETHDRYELYLLASDHGHPVALTSTARVTIFVEDINDNQPKVILPS
SNSSCQTVSQTAVTGTIVTKIFAIDADSGLNSEITYTVVMPDPVQNTSPFRVDSMSGNIT
VAQQLLQKDLGMHHLFIVVRDGGKPAPLYTTVWVNLLVNESVGPCHLDREPTWSGTADVV
QTPQKTQICEAVDIRSAQLTLLVGLGMILVSTCWLVATVVLYLKQRRLHHKNRGHIEKNE
IPLRLKDNYY
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatgggactcctattaatatgagctgggttggactaatgcagattctgcttgtt
gtggtacatctgcagcagataatatgtggttctgtccggttttccatcccagaggaacag
gggccaggtgtcctggtggggtcactcagtgaacactttccacctccgtaccagctactg
acgcagaagtatctgtggatggacaaaaacactggagatttttacaccactgaggaaaag
atggaccgcgaggccctcttccctgaggaaacaaaaactgaggaatgcattattttacac
aatgctgtcgtggggccctcaggcgaccttatacagttcgctgtgatcatagaggacatc
aatgacaacgcgcctcattttgaaaacagtgaaatacacttgaagatgtctgaagacgtg
tctgtggggaccagtttcttattggatgaccaggctctggacagggatgctgggtataac
agtgagctgtcttatcagctagaagattttgatggagttttcagtttaacagtagaagac
gggcctgtcatcatgctggttgtgcaaacagctctggatagggagactcaggacatgtat
cagatgacgctggtggccactgaccgtggcacaggctctttaagtgctacagcgacttta
atagtcacagtgacagatgttaatgacaactgtccaagctttagccccgacagcccccgc
agcgtcagcatccccggagactccccgaagaacatgctggttgctcaggtcagggccaca
gacccagattcaggcttgaatgctgccatcgtgtactccctcagtcccaaagtctcagag
caggccaagaatctcttaagccttgacagcctcactgggtccatcagactaacacaggac
ctccagagtgacagctccaaggagctgctgttgaaagtgttagctagcggccatcactgc
cccccagcagacactcaggtaactgtatccgtgctccccaaggccaaccaagagctggca
atcaagatcgggttcatagtggagcatcaaaacgagactatggtgttaccagagaaccaa
ccccccactgtcttagctgttttagagcttgagggtgacagcagatttgaaggctcatct
attgccattgagggtgaggtacctttcactctgagcccacagaatggcaaatatctcctt
tccacatcaaaggccctagactatgagatgaaaagagaacatcatacttttgttgtagtg
catgctgaaggatctgtgatcactcattccaggcgtgcgatcagggtgttggtggcagat
gtcaatgataatgctccaatttttgtccagtctcactacaagctggaggtggaagaaaac
aaccagccagggatgtcactgctgaaggtcttggcaaccgacgcagacagtggatacaac
ggcagggttacctacagtctggacaaacacacatcttccatctttaacattgaccccaat
acaggtcagctgtctgtgtcagccattctggacagggagcggcaggatgcacacacactc
actgtgtttgcagaagatagcggctctcctccattggagtcagcggccacagtatccatt
caagtgctggaccagaatgacaatgcacccgtttttataacccctcactttatctttttc
atgcctgagaatgtaaaactgtttgcccaggtggggagggttaaggtgacagacccagac
gaaggagcgaatgggaacacagagttgcatgttgtgagcagcagtggaccttttgttttg
gataacacccttgggacactgcacaccaccaccgacttagatcgcgagacgcacgaccgt
tatgaactctacctgctggctagcgatcatgggcacccggtcgctttgacttccactgcc
agggtaactatctttgtggaggatatcaatgacaaccagccaaaagttatccttccaagc
agcaactcctcctgccagactgtctctcaaacagccgttacaggcaccattgtaacaaag
atatttgccattgacgcagactcagggctcaattcagagattacttacactgttgtgatg
ccagacccagtgcaaaacaccagtcccttccgagtggattcaatgtcaggaaacattact
gtagcccagcaactcctacagaaagacctgggaatgcatcacctgttcattgtggtcaga
gatggggggaagccagctccactttataccactgtctgggttaatctgttggtcaacgag
agcgtgggcccctgccacttggaccgggagcccacctggtcagggacagctgacgtggtt
caaaccccccaaaagacccaaatctgtgaggcagtggacatcagatctgctcagctgaca
ctgttggtaggccttggtatgatactggtgtccacatgttggcttgtggcgacagttgtt
ttatacctgaaacagaggagacttcatcataaaaatagggggcacattgagaagaatgag
attccactcaggcttaaagacaattattactaa
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