Trematomus bernacchii (emerald rockcod): 117475282
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Entry
117475282 CDS
T09643
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117475282 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117475282 (atrx)
03036 Chromosome and associated proteins [BR:
tben03036
]
117475282 (atrx)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
117475282 (atrx)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117475282 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
117475282
NCBI-ProteinID:
XP_033977358
LinkDB
All DBs
Position
Unknown
AA seq
2169 aa
AA seq
DB search
MSLASSESHQDQMSEKAEEPGSSTETMKPSSSRNRRKPTSVAKNTGAKGSDSSAESENEG
ATSDNPSDNNTSSASKGTLVMRPSGNENKGAMKLRVDFKQKPTDDTLQKKINCTACGKQV
IQLQRNAVYEHPALKVLICKSCYNYYTSDDINRDSDGMDEQCRWCAEGGKLICCDHCNNA
FCRKCILRNLGKKELSVITDENSKWHCYVCRSEPLQDLVSKCQSVLEKQELQSKQRKPEK
SEEREKKRHKNKEVKEHKPVVNGKEHSEGSGTMTFSYKKLQVPKELLKKTKKLVETTTGL
NNTFIQFIQQAANEQEDKSIRYRHLKAFKAVLADLKKAHSALEEALGPELKNMELQNGNE
GQFIEREHSKVAASVENDHVDNVADATEGADVMEDADVEAEATEDAEVAENADIAEDADV
EAEDDNVAEDADVAEDADVAAEEADVAMDADLEAEATQDAEVEETAFIAEDADVTEDADV
EAEDDNVAEDANVAEDANVAAEEADVAMDADLADESDEADDPGVADEEEADVAAEEADVA
AEEADLKQHNEKAMDMDQVSTETELKDSQTETDLTKKKIKTEVCDEGLVTAGEMSLDHDI
MSVPPSVPEELFQMVESLADSTMLSQTGTDMVTDADTKLNKNSTNKSSQPKVKNLIVKLT
PVPVVTTRGSKPSWSKNKEKDGQLQKKSKKESDKEKGDAPNAVDGTESPPPSRRSSRLKT
TPLRKQTEKRGKEESSDSELEEDPKGKTKSSKTSRHTKKEDGEETKDSEKSPVDSDSDEV
PNILLEKAAAGRSTDEEQGSTSAKKCLFKLNNTSTEDTDKASKRKRKSASSDSDSGNKSK
KTSKKKKQKGSDNADSDSEKEKETKSKVALGKRRSSRVKKQDEAKEGKRSTEKKATKLKR
SYEKKRKGGSPKASAKLQSSSSEDDDEEEEEKADGDSGDDSDAQKIKPIVEDNVVGGSGA
FRQSSGDEDDDKEKVSQVFEDDDDDDPENRIAKKMLLAQIKSNYSSGAESSSDDEDDKEA
KSSKKAKKEDDDDDDDEEEQEDEDTGDSEDSDIEVKKRGGRHKLLRHKLSLSEGESGDEK
AGSKEKKKGKKNKEKVSSDDSSDSDFENSESSEQSGVSEELSESENEGKRRKTRSSKKKD
EEKQRSYKKQKKKRRRIKVQDSSSSNEKSGDEDAEDRKGRKKLRKILKNDKLRSETRDAL
KEEEDRRKRIAEREALREKLREVLPPQIQQDISKVIAAEESSLMDCPITTKLVLDEDEET
KEPIVQVHKHLVTKLKPHQVDGVQFMWDCCCESVKKIEKSSGSGCILAHCMGLGKTLQVV
TLLHTLLLCEKLDFSTALVVAPLNTVLNWLNEFEKWQVGMKDEESLEVIELATVKRPQDR
AYALQRWQDMGGVMIIGYEMYRNLTQGRNIKSKKLKETFQKTLVDPGPDMVICDEGHILK
NEASAVSKAMNSIRTRRRVVLTGTPLQNNLVEYHCMVNFIKENLLGSVKEFRNRFINPIQ
NGQCADSTLQDVRIMKKRAHILYEMLNGCVQRKDYTALTKFLPPKHEYVLSVRVTPIQCK
LYRYYLENFTGVGNAVEGGRGRAGTKLFSDFQMLSRIWTHPWCLQLDYISKENRGFFDED
SMEEFIASETEEESSMSMTSEDEKAKKKKKRGKGKKKGSEDSDSDEVEVIKEWNTSTRGK
NGEGRVRPEPVEEPRHASSPDWHKEFVTEADAEILEHSGKLTLLFEILRMAEEVDEKVLV
FSQSLISLDLIEDFLELSCRAKDENKVSPYKGEGKWFRNIDYYRLDGSTNALTRKKWAEE
FNDVNNPRGRLFLISTRAGSLGINLVGANRVIIFDASWNPSYDVQSIFRVYRFGQIRTVY
VYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQIERHFTTNELTELYIFDPDMLEESSEK
KSKRATPLLPKDTFLAEMLQNNKDQIMCYHEHDSLLEHKGEEALSEEDRKAAWAEYEAEK
KGVFVKSNYQAGYPQMDMGAGANYFSFNMAALASMSNQQLEDLINQGRQKVIEATNSLKS
ITREPLEDIIGRVWKENPSLNEAQVQSMALGRQSTVELEFKHREAVYRDVLTRQQTLMMY
VQKLITNRKVQEQQQQQVMQNQANYLQQLAMQNGMMGGAGLSQMDLVGLYQQLHGLGGMG
KNPGPSKGL
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggcatcttctgaatcacatcaagaccaaatgtcagaaaaagcagaggagcct
ggtagctcaacagaaactatgaagccttcctcttctcgcaacaggaggaagcccacttca
gtggctaagaacactggagcaaaaggatccgactcgtcagccgagagtgaaaatgaaggt
gcaacttctgacaatccttcagacaataacacaagcagcgcttctaaaggcactttagtg
atgagaccatctgggaatgaaaataaaggcgccatgaagctgagagtggatttcaaacag
aaaccaacagatgatacgttgcagaagaagataaactgcactgcctgtggaaaacaagta
atacagttgcagcgtaacgcggtgtacgagcatcccgccctcaaagtactaatttgcaag
tcatgctacaattattacaccagtgatgacattaacagagactccgatgggatggatgag
cagtgcaggtggtgtgctgaaggtggcaagctcatctgttgtgaccactgcaacaatgct
ttctgcaggaagtgcatcctgcgcaacctgggcaagaaggagctgtctgtcattactgat
gagaactcaaagtggcactgctatgtctgcaggtcagagcccctccaggatttggtctcc
aaatgccaaagtgtcctagaaaaacaagaacttcaatccaagcaacgaaaaccagagaaa
agcgaggaacgtgagaaaaagagacacaagaataaagaagtaaaagagcacaagccggtt
gtcaatgggaaagaacacagcgaaggctcaggaaccatgactttctcctacaaaaaactg
caggtacctaaagaacttttaaagaaaacaaaaaagcttgttgagactacaacaggtctg
aacaatacgttcatccagtttatccagcaggcagccaacgagcaggaagataagtctatc
agataccggcatttgaaagccttcaaggccgtgcttgctgatttgaaaaaagctcacagt
gctttggaggaggctttggggcctgaattaaaaaacatggagttgcagaatggtaacgaa
gggcagtttattgaaagagagcactctaaagtcgctgcttctgtagaaaacgaccatgtg
gataatgtggcagacgcaacagagggtgctgacgtaatggaggatgctgacgtagaggca
gaagcaacggaggatgctgaagtagcggagaacgcggacatagctgaggatgctgatgta
gaggcggaggatgataacgtagcggaggatgctgacgtagcggaggatgctgacgtagct
gcagaggaagcagacgtcgcgatggatgctgacttagaggcagaggcaacgcaggatgct
gaagtagaggagaccgctttcatagctgaggacgctgacgtaactgaggacgctgatgta
gaggcggaggatgataacgtagcggaggatgctaacgtagcggaggatgctaacgtagct
gcagaggaagcagacgtcgcgatggatgctgacttagcagatgaatctgacgaagcagat
gaccctggcgttgcggatgaggaagaggctgacgtagccgcagaagaggctgacgtagcc
gcagaagaagccgacctgaagcagcataatgagaaagccatggacatggatcaagtgtca
actgagactgaacttaaagacagccaaacagaaactgatctcaccaaaaagaaaattaaa
actgaagtatgtgatgaagggctggtgacagcaggtgaaatgtccctcgatcatgacatc
atgtctgtacctccatctgttcctgaggagctttttcagatggtggagagtcttgcggat
tctaccatgctctcccagaccggcactgatatggtcacagacgctgatacaaagttaaat
aagaactcaacaaataaatcctcccagcccaaggtgaagaacctcatagtcaaactgacc
cctgtgcctgtcgtgacgacacgtgggtccaagccctcctggtccaaaaacaaagaaaag
gatggacagctgcaaaaaaaatccaaaaaagaaagtgacaaggagaaaggcgatgcccct
aatgctgtagacgggacagaaagcccaccaccaagccgtcgctccagtaggttgaagacc
actccattgaggaagcagactgagaaaaggggtaaggaagagtcctctgattcagagttg
gaggaagatcctaagggcaaaaccaagtcctccaagacatcaagacacaccaagaaagag
gatggggaggagaccaaggattcagagaaaagtccagtggattctgactcagacgaagtt
ccaaacatactgttggagaaagcagcagctggccgcagcactgatgaggaacagggaagc
acaagtgctaaaaagtgtctattcaaactaaacaacacatctacagaagacacagacaaa
gcatccaaacgcaaaaggaaatctgcaagctccgattcagactctggaaacaaaagtaaa
aagacgtcgaagaagaagaaacaaaaaggctccgataacgccgactctgactctgaaaaa
gagaaggagacgaagagtaaagtggccttagggaagaggagatctagccgtgtgaagaaa
caagacgaagcaaaagaaggaaaaagatcaacagagaagaaagcaactaagctgaagagg
tcttatgaaaagaagcgcaagggagggagcccaaaagcatctgccaagcttcagtcgtcg
tccagtgaagatgatgatgaggaggaggaggagaaggctgatggggactccggagatgac
agtgatgctcagaagatcaaacccatcgtggaggataacgtggtgggaggcagtggagct
ttccgacaatcctcaggtgacgaagatgacgataaagagaaggtctctcaggttttcgaa
gatgacgatgatgatgatcctgaaaacaggattgcaaagaaaatgcttcttgcccaaata
aagtcaaactattcttctggagcggagagctcctctgatgatgaagatgataaggaagca
aagtcctcgaagaaagctaaaaaagaggatgatgatgatgatgatgatgaagaagagcag
gaagacgaggacacaggcgactctgaggattctgatattgaagtgaagaagcgtggtgga
cgacacaaattgcttcgtcacaaactctcgctgagtgagggagaatcaggagatgagaaa
gctggcagtaaagagaagaaaaagggcaaaaagaacaaggagaaagtgagcagcgatgac
tcttcagactcggactttgagaactcagagtcaagtgaacagtcgggggtaagcgaggag
cttagtgaatcggagaatgaaggaaaacgcagaaagaccagatcttcaaagaagaaggat
gaggagaaacagagaagttacaagaagcagaagaagaagcgacgcaggatcaaagttcag
gattcttcttccagcaatgagaagagtggagatgaagacgccgaagaccgcaaaggacgc
aaaaagctccgcaaaatcctgaagaatgacaaactgcggtcagagacgagagatgctctg
aaagaagaggaggataggaggaagcgtatagctgagagagaagcactcagggagaaactt
cgagaggtgcttcccccgcagattcagcaggacatttccaaagtgattgcggcagaggag
tcttccctgatggactgtcccatcaccaccaagctggtgctggatgaggatgaggagacc
aaggagccgattgtgcaggtgcacaagcaccttgtcacaaaactcaaacctcatcaggtt
gacggggtgcagttcatgtgggactgttgctgtgaatctgtgaagaagatcgagaagtct
tctggctccggctgcatcctcgcccactgtatgggtctggggaaaactctgcaggtggtg
acattacttcacactttgctgctgtgtgagaagctcgatttctccacagccctggtggtt
gctcccctgaacactgtcctcaattggctcaatgagtttgagaagtggcaagtgggaatg
aaggatgaagagagtctagaggtgattgagctggccacagtgaagaggccacaggaccga
gcatacgcccttcagcgatggcaggatatgggtggcgttatgatcattggatatgaaatg
tatcgaaacctgacgcagggcaggaacatcaagagcaagaagctcaaagagacctttcag
aagactctggtagacccaggtccagacatggtgatctgtgatgaaggtcacatcctgaag
aatgaggcgtctgctgtgtccaaagcgatgaactccatccggacgagaaggagggtggtg
ctgacgggaacgcctctgcagaacaacctcgttgaatatcactgcatggtgaacttcatc
aaggagaacctgcttggttcagtgaaagagttcaggaaccgcttcattaaccccatccag
aacggtcagtgtgccgactccacactacaagatgtccggatcatgaagaagagggctcac
atcctctatgagatgctgaacggctgtgtccagaggaaagattacacggcactcaccaag
ttcctcccacccaaacacgagtatgtgttgtcggtccgagtgactccgatccagtgtaaa
ctctacagatactacctggagaacttcacaggtgtggggaatgctgtggaggggggccgg
ggccgcgccgggaccaaactcttcagtgatttccagatgctcagcagaatctggacccat
ccctggtgccttcagctggactacatcagtaaagaaaacaggggtttctttgacgaggac
agtatggaggagttcatcgcttctgagacggaagaagagtcctccatgagtatgacctct
gaggatgaaaaggcaaaaaagaaaaagaagcgaggcaagggaaagaagaaaggctctgag
gactcggacagtgacgaggtggaggtcatcaaggaatggaacaccagcaccaggggcaag
aacggagagggtcgagtccgaccagaacctgtagaagaacctcggcacgccagctctcct
gactggcacaaggagtttgtcactgaggctgacgctgagatcctggagcactctggaaag
ctgacgctactctttgagatcctgcgcatggcagaggaagttgacgagaaagtgttggtg
ttcagtcagtctctcatctctctggacctgattgaggatttcctggagctgtcttgcaga
gctaaagacgaaaataaggtttctccatacaaaggtgaaggcaagtggttcaggaacatc
gactactatcgcctggatggctccaccaacgccttgaccaggaagaagtgggctgaagag
tttaatgacgtcaataacccaaggggtcgtttgttcctaatttcaacgcgagccggctct
ctcggcatcaacctggtgggagccaaccgggtcatcatcttcgacgcctcctggaacccc
tcctacgacgtccagagtatcttcagggtttaccgctttggccagattaggaccgtctat
gtgtacaggttcctggcgcagggtacaatggaggacaagatttacgaccggcaggtaacc
aaacagtctctgtcgttccgggtggtggaccagcaacagatcgagaggcacttcacaacc
aacgagctgacggagctctacatcttcgacccggacatgctggaagaatcctcggagaag
aagagcaagagagccacgcccttgcttcctaaggataccttcctggctgagatgctgcag
aataacaaggaccagatcatgtgttaccatgaacacgactccctgctggagcacaagggg
gaggaagccctgagcgaggaggatcgcaaggctgcctgggccgagtacgaagcagagaaa
aagggtgttttcgtgaagtccaactaccaggcgggataccctcagatggacatgggcgcg
ggcgccaactacttctccttcaacatggcggctttggcctccatgtccaaccagcagctg
gaggacctgataaaccagggacgccagaaagtcatcgaagcaacaaattcattgaagtct
ataacacgggagccgctggaagacatcatcggcagagtgtggaaggagaacccctccctc
aatgaagctcaggtgcagtccatggctctgggccggcagtccaccgtggagctggagttt
aaacacagagaggccgtgtaccgggacgtcctgaccaggcagcagacgctgatgatgtac
gttcagaagctgatcaccaacaggaaggtgcaggagcagcagcagcagcaggtcatgcag
aaccaggccaactacctgcagcagctggccatgcagaacggcatgatgggaggtgctggg
ctcagccagatggacctggtgggtctctaccagcagctccacggcctggggggcatgggc
aagaacccgggtccctccaagggcctgtag
DBGET
integrated database retrieval system
