Trematomus bernacchii (emerald rockcod): 117475508
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Entry
117475508 CDS
T09643
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor
KO
K20286
TATA element modulatory factor
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117475508 (tmf1)
Membrane trafficking [BR:
tben04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
117475508 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
Motif
Other DBs
NCBI-GeneID:
117475508
NCBI-ProteinID:
XP_033977628
LinkDB
All DBs
Position
Unknown
AA seq
1164 aa
AA seq
DB search
MSWFNSSLSSFAKQALTTAQKSIDRVLDIKEEDQWGDTVVMPYDDLTIPGKLSLSGGWGM
TPWEAPPEERTITPPPSSEAITTPVTRTVVDESENFFTTFLPPGDVQGVTISQVVSVPPT
KSQRRPQEKEKKSREAVAHEEEHSALADETLEYQTDDEGQIVDLDSSAESPYLDTILLQP
VSPAPSPSDLPDSEMSDVQTDIGSTVSVDSTPEQSQPPSDLQVEQDTTDSCEPAAVTSEL
KSSTPPDPSPSPPSKEVLIENKDSKVEDRQSDTPSPPVSAFSSGTSTTSDIEVLDHESVL
SESSASSRQETGEGKADLHLMQDSFQLLTASTCGDFPHLEDYSKLTESCGSSSDAFERID
SFSVQSLDSRSVSEVNSDDDIPGSRTLASVTTGSPPLTVSSAVCQKQEDGEEENLGQEER
EEDEDEDEEEEEEEEGYTDTMREQSLDEMEESGRSATPVNSDQPEELMEQEQDSETNVTL
SDPASNADEQIAPPITAEMKSVSPVQILELQKVIDDLSGRLEKRESQLLVVSKDKATLEE
QCDNLKDEVISLKEDSSTVQSLKDEFTQRIADTERKAQLACKERDIAKKEIKGLRDELST
RLHSSDTLEIIREREDQIRGLLEEGEKLSKQQLQHSNIIKKLRVKEKESDTRITKQQKKI
REQEEELRQLQQVLDGKEEVEKQHRENIKKLNAVVERQEKDVSRLQTDSEELQENNRSLQ
AALDNSYKELAELHKAGVSRASEAQEAALSRETQAKDLLSLALEKNQEEGRMQQEALANQ
VADLRMALQRAEQQQGRKEDYLREEISELQQRLQEAETRNQELSQSVTSATRPLLRQIEN
LQASLGGQTASWEKLEKSISDRLADAQTQLAVAVERERSAIEELLSIRSQQASLESQISL
FRQEKARLLAQLEAEKNKREKLEDESTREHVDLENLRGEHNRMLEETKKEKLLLTNQLEM
ERMKVEQEKKKCYLANEALREKERKAMTHSVGEPPASSTPSLSRSSSISVPDNSALHSSI
LSQEDLLDHSLGNMTMSMSMSGTNLYEAARLSGGSSIMENLQSQLKLREGEIAQLQIEIS
SLERSRSVMAEELVRLTNQTDEMDEMVKEIPTLKVHLKDLQQRHNTILQMYGEKAEEAEE
LRLDLIDVKNMYKCQIDELLKNQK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcaactcctctctgtccagcttcgctaaacaagctttaacaacagctcag
aagtcaatcgaccgagttctggacatcaaagaggaggaccagtggggtgacacagttgtc
atgccctatgatgatttaacaatacctggaaagctgtcactgagtggaggatggggaatg
acgccgtgggaggcgccccctgaagagaggaccatcactcctcctccttcctctgaggcc
atcaccactcctgtcacccgcacagttgtggatgaatcggaaaactttttcactaccttt
ttgccacccggagacgtccaaggcgtcaccatctcccaggtagtgtccgtaccacctact
aagtcgcaaaggcggcctcaggagaaggaaaagaaaagcagggaggctgtcgcacatgaa
gaagaacattctgcacttgcggacgagaccctggagtatcagacggatgatgaaggccag
atagttgatctggattcctcagcagaatcaccttatttagacactatcctcctgcagcca
gtttctcctgctccttctcccagcgatcttcctgacagcgaaatgagcgatgtacaaaca
gatatcggctctacagtttctgtagactccacaccagagcagtcacagcctccatcagat
ctccaggtggagcaggataccacagattcctgtgaacctgctgctgtcacttctgaactt
aagagctctactccccctgatccttcgccctctccgccctctaaggaagtactcatagag
aataaagactcaaaggtggaggaccgtcaaagtgataccccctctcctccggtcagcgct
ttctcctcaggaacctccaccaccagtgacattgaagtgcttgaccacgagtcagtgttg
agtgagagctcagccagctccagacaagaaacaggggagggcaaggccgaccttcacctg
atgcaggactcctttcagcttctcacggcctccacctgtggagatttcccccatctggag
gactactccaaactcacagagagctgcggctcctcctcggacgcattcgagcgcatagat
tcattcagcgttcagtcgctggacagccggagtgtcagcgaggttaactcggacgatgat
atccccggcagtcggacgctagcgtctgtcaccacgggctctcctcctttgacagtgtca
tcagctgtgtgtcagaagcaggaagatggagaggaggagaatttaggacaggaggaaagg
gaggaggatgaggatgaggatgaggaggaggaggaagaggaagagggctatacagacaca
atgagggagcagtcgctggatgagatggaggagagtggccggagtgcgacgcctgttaat
agtgatcagcctgaagagttgatggagcaggagcaggactctgagacgaatgtcactctg
tctgatcccgcctccaacgctgacgaacagatcgctccaccaatcactgcagagatgaaa
agtgtctccccagttcagattttggagcttcaaaaggtgattgatgatctgtcaggccgc
ctggagaagagagagtctcagcttctggttgtcagcaaagacaaggccacgctggaggag
cagtgtgacaacctcaaagatgaagtgataagcctgaaggaggatagctccacggttcag
tccctgaaggatgagttcactcagcgcatagcagacacagagaggaaggctcagctggcc
tgcaaggagagagacatagccaagaaggaaataaagggcttgcgagacgagctttctaca
agacttcactccagcgacacactggagatcatcagagagagggaagatcagatcagaggc
ctgctggaagaaggtgagaagttgtccaagcagcagctgcagcacagcaacattatcaag
aagctgcgtgtgaaagagaaggagagcgacacaaggatcacaaagcaacagaagaaaatc
agggagcaggaggaggagctcaggcaactgcagcaggttctagatgggaaggaggaggtg
gagaaacagcacagggagaacatcaagaagctgaacgcggtggtggagcggcaggagaag
gatgtgagccggctgcagacggactctgaggagctgcaggagaacaaccgcagcctgcag
gcagcgctggacaactcctacaaggagctggcagagcttcacaaggcgggggtcagcaga
gccagtgaggctcaggaagcggctctcagcagagaaacacaggccaaggatctgctgagc
ctggccctggagaagaaccaggaggagggcaggatgcaacaggaggctctggccaatcag
gtggcggacctgaggatggctctgcagagggctgagcaacagcaaggaaggaaggaagac
tatctgagggaggagatcagtgagctgcagcagaggcttcaggaggcagagaccaggaac
caggagctcagccagagtgttacctcggcaacgcggccccttctgcgacagattgagaac
ttgcaggcctccttaggcggacagacggcatcctgggagaaactggagaagagcatctct
gataggctagcggatgcccagacgcagctggccgttgcggtggagagggagcggtcggcg
attgaagagctcctgtccatcaggtcccagcaggcctctctggagtcacagatctccctg
ttccgccaggagaaggcccggctcctcgcacagctggaggctgagaagaacaagagagag
aaactggaggatgagagcactagggagcatgttgatttagaaaatctgcgaggagagcac
aaccgcatgctagaagaaaccaagaaagaaaagctgctgctgaccaatcagttagagatg
gagaggatgaaggtggagcaagagaagaagaaatgctacttggctaatgaagctctcagg
gaaaaggagcggaaggccatgactcactctgtaggagagcccccggcgtcctccacaccc
tccctgtcccgctccagctccatcagtgtgccggacaactctgctctacactcctctatt
ctttcccaggaggaccttttagaccactctcttggtaacatgaccatgtccatgtcgatg
agcgggaccaacctgtacgaggccgcccggctgtcggggggctccagcatcatggagaac
ctgcagtctcagctcaaactcagagaaggagagatcgctcaactgcagattgagatctcc
agtctagagaggagtcgttctgtgatggcagaagagctggtccgactgaccaatcagacc
gatgagatggatgagatggtgaaggagattcccacgttgaaagttcatctcaaggatctg
cagcagaggcacaacaccatcctgcagatgtacggagaaaaagccgaagaggcagaggag
ctgagactggacctgatagacgtgaagaacatgtacaaatgccagatagacgaacttctg
aagaaccagaaataa
DBGET
integrated database retrieval system
