Trematomus bernacchii (emerald rockcod): 117475558
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Entry
117475558 CDS
T09643
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172 isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117475558 (btaf1)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
117475558 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_2
Vac14_Fab1_bd
TPR_Trm732_C
TOR1L1_N
ARM_ECM29
Adaptin_N
Fe-S_assembly
Motif
Other DBs
NCBI-GeneID:
117475558
NCBI-ProteinID:
XP_033977729
LinkDB
All DBs
Position
Unknown
AA seq
1848 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPQELNSLLLKVLIYLRSPNWDTRI
AAGQAVEAIVKNIPEWDPAPRPKEESCEDLSPEDSSCDRLSFYHFDISRLLKHGASLLGS
AGAEFELQDDKNAEMDPKERLARQRKLLQKKLGMDIGAAIGMDTEELFNDEDLDDSCQPS
ELGAQGSKTTAGSSCHNHVAADLIDSEFRPGMSNRQKNKAKRMAKLVAKHRSRDMDPNEK
SNDSFEGEPDEKRRKTTNVVIDQQATEDKIDNVPDNSGLLEEIQEWPLESFCEELCNDLF
NPSWEIRHGAGTGLREILKSQGAGGGKLVGSTAEQMSRQHQEWIEDLVIRLLCVFALDRF
GDFVSDEVVAPVRETCAQALGVALRHMSETGVSMIVDVLLKLLKEDQWEVRHGGLLGIKY
ALAVRKDLISVLLPRVLAAITEGLQDLDDDVRAVAASALIPVVEGLVQQLPNEVPFIVNT
LWDALLDLDDLTSSTNSIMTLLSLLLTYPRVRQCSMQQSLTILVPRVWPFLRHTISSVRR
AALETLFTLLSKADESCAMWINPILQDMLRHMFQSCILESNEEILELIQKVWMELLSQAP
HQFVVAASCPWMGAWLCLMMQASQIPIDVNMLLEVKARSKDKAGAKGRQCTIQVKETLQE
YIAGAETVTEDSVTRDYVVVRSRLMAARLLGALCRCICDPQVNAASQEIRPAESLGQLLL
FHLNSKSALQRIAVSLVLCEWAALQKDCQVVSPIVQPRLLAILSEHLYYDEIAIPFTRMQ
NECKQLIALLADANIDLQDRLNCSVFTIDQANELVTTIFTESTACLNVRSSQYQALDGKR
QQAQSTMNETNLEWQQLHLRVHMFTACAVINLQVLPEKLNPLVRPLMETIKREENTLIQG
YAASFIAKLLQQCAGRSPCPNLKIIKNLCASACVDSAVTPSSACPVPPTQENAKGSGLDC
THHMVNKTRGIITLYRHQRAAFAITSKRGPTPKAPKTPTTELPPGSTISSDNDESKKPLL
IQRRGAEFSLTTVARHFGSNFTKSLPYLWENTVGPLRTAVTEKQHIDREVQLERGDAAAQ
ELVNSLQVLEVMAGAMAAELRPLLLEHLPHLFTCLQHPYTAVRHMAARCVGVLSKIAMLE
TMNGFLECVLPWLAAIEDCTKQEGAIEALACVMEQLDVDIVPYIVLLVVPVLGRMSDPSD
SIRFMATQCFATLIRLLPLESGIPDPPAMSADLIRQKARERDFLEQLLDGRKLENYKIPV
PIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDNYLRAQEYAKTK
AADSSPMPSLVVCPPTLTGHWVDEVGKFCSKEYLHPLHYTGPPTERMRLQHQVKKHNLII
ASYDVVRNDIDFFKNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVILSGTPIQNNV
LELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALHRQVLPFL
LRRMKEDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKASVEDSISSTSTEEEEEKP
KLKATGHVFQALQYLRKLCNHPSLVLTPQHPEYKRISEQLIGQNSNLRDLQHAPKLSALK
QLLLDCGLGGGGGSEGGTEAVVAQHRVLIFCQLKSMLDIVENDLLKAKLPSVAYLRLDGS
VPAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA
HRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIASTVITQDNACMQSMGTDQVLNLFSL
DKGERGEQTASSSGKDSMKSVLDGLGELWDQQQYDTEYNLDSFMTSLQ
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggctgtatcaagacttgatcgtttgtttatactgcttgacaccggaacaacaccagta
accaggaaagcagccgcccagcagcttggagaagtggtcaaactccatccacaggaactc
aatagccttctgctaaaggtcttgatctacctaaggagtccgaattgggacacccgaata
gcagcaggccaagctgtagaggccattgtgaagaatattcctgagtgggacccggcgccg
aggcccaaagaagagtcttgtgaagacttgtctccggaggactcctcttgtgaccgcttg
agtttctaccactttgacatctcccgcctcctcaaacacggagcgtctctgctgggatct
gccggggcggagtttgagctgcaggatgacaaaaatgctgagatggaccctaaggagcgt
ctggcccgccagagaaagctccttcagaagaagttgggtatggacatcggtgcggcaatc
ggcatggacacagaggagctgttcaacgacgaggacctcgacgacagctgccagcccagt
gagctcggagcgcaaggaagcaaaaccacagctggatccagctgtcacaaccatgtggct
gctgacttgattgactcggagttcaggccaggcatgagcaatcgtcagaagaataaggct
aagaggatggccaagctggtggccaaacacagatctagagacatggatcccaatgaaaag
agtaacgacagttttgagggcgaacccgatgagaaacggcggaaaaccaccaatgtagtt
attgaccaacaggcaacagaagacaaaatcgacaacgttccagataactcgggtctttta
gaggagatacaggagtggcctctggagagcttctgtgaggagctctgcaacgacctcttc
aatccttcatgggagatccgccatggtgctggtacaggtcttagagaaatcctgaagtcc
caaggtgctggtggggggaagctggtgggaagcactgcagagcagatgtcgcggcagcat
caggagtggatagaggacctggtcatccggctgctctgtgtctttgctctggaccgcttt
ggagattttgtatctgatgaggtggtggctcctgtcagggagacgtgtgcccaggccctc
ggtgtggccctccggcacatgagtgaaacgggtgtttccatgatagtggacgtgctgctg
aagctgttaaaagaagaccagtgggaggtccgtcatggaggcctgctcgggatcaagtac
gccctggctgtccgaaaggacctgatctccgttttgctgccccgggtgctcgctgccatc
actgaaggcctgcaggacctggatgatgacgtcagggccgtggcagcctccgccctcatc
cctgtggtggaaggcttggtgcagcagctgcctaatgaggtacccttcattgtgaacaca
ctatgggatgctcttttggacttggatgacctcacttcgtccacaaacagcatcatgacg
ttgctgtccttgctcctcacctatccgagggtccgccagtgcagcatgcagcagtcacta
acaatcctcgtcccccgggtttggcccttcttgagacacaccatatcatcagtcagacgg
gcggcgctggaaacccttttcacgctgctgtcaaaagctgacgagagctgtgcgatgtgg
atcaatcctatcctacaagatatgctgcggcacatgttccagtcctgcatactggagagc
aatgaggaaatcctggagctcattcaaaaggtgtggatggagctgctgtctcaggccccg
catcagttcgtggtggcagccagctgtccctggatgggcgcctggctctgtctcatgatg
caggcctcacaaattcccatagacgtcaacatgctgctggaagtgaaggcccgctctaag
gataaggctggtgcaaagggacgtcagtgtaccattcaggtgaaggagacgctgcaggag
tatatagctggagcggaaacggtgacggaggactcggtgacgagggactacgtggtggtt
cgatctcgcctcatggctgccaggctgctgggggctctgtgtaggtgtatctgtgaccct
caggtcaacgctgcgtctcaggagatccgaccagccgagtctttaggccagctgctgctc
ttccacctcaactctaagtctgccctgcagcgcatagctgtgtctctggtgctgtgtgag
tgggctgcactgcagaaggactgtcaggtggtgtcacccatagtgcagcctcgccttctg
gccattctgtcagagcatctgtactacgatgagatcgccatccccttcacacgcatgcag
aatgaatgcaagcagctcattgctctgctggctgacgcaaatatagacctgcaggaccgc
ctcaactgcagcgtgttcactatcgatcaagctaatgaactggtaaccaccatctttacc
gagtcgacagcgtgtctgaacgtgaggtccagtcagtatcaggctctggatggtaaacgt
cagcaggctcagtcaacaatgaatgagaccaacttggagtggcagcagctgcatctgcgt
gtccacatgttcacagcctgcgcagtgatcaacctgcaggtgcttccagagaaactcaac
ccgctggtcaggcctctgatggagaccatcaagcgggaggagaacaccctgatccaggga
tacgctgcttcctttatagccaagctgctgcagcagtgtgccggacgctcgccttgcccc
aacctcaagatcatcaagaacctctgtgcctcggcctgcgtggactccgccgtcacaccc
tcgtctgcctgccccgtcccccccacccaggaaaacgccaaaggcagtgggttggactgc
acacatcacatggtcaacaaaacccgaggcatcatcaccctctaccgccaccaaagggca
gcgtttgccatcaccagtaagagggggccgacccctaaagccccaaagacccccaccacg
gagcttcctcctggcagcaccatcagctctgataacgatgagagcaagaagccgttactc
attcagagacgaggggcggagttctccctgacaactgttgccaggcactttggctcaaac
ttcaccaagtctctgccgtacctatgggagaacactgtgggaccactgaggacagcagtg
actgaaaaacaacacatagacagggaggtccagctggagaggggggacgctgccgctcag
gaactggtcaactcgctacaggtgctggaagtcatggcgggggccatggctgctgaactc
aggcctttgctactggagcacttgccccatctgttcacctgcctgcagcacccgtacaca
gcggtgcgtcacatggcagcgcgctgtgtgggcgtgctcagtaagatagccatgctggag
accatgaacgggttcctggagtgtgtgctcccctggctcgctgctatcgaagactgcacc
aaacaggagggcgccatcgaagctttagcctgtgtgatggagcagctggatgtggacatt
gttccgtacattgtgcttctcgtagtgcccgtgctgggtcgtatgagtgatcccagtgac
agcattcgcttcatggccacacagtgctttgctacactcatccgcctgctgcccctggag
tcaggtatacccgacccccccgccatgtctgctgacctgatccgccagaaggccagagag
cgcgacttcctggagcaactactagatggcagaaaattggagaactacaagatcccggtg
cccataaaggctgagctcaggaagtaccagcaggacggagtgaactggctgtccttcctg
aacaaatacaagctccacgggatcctgtgtgacgacatgggcctcggcaagacgctgcag
tccatctgcatcctggcaggagacaactacctcagggcacaggaatatgccaagactaaa
gcagcagacagcagccccatgccctctctggtggtgtgtcctcccacgcttacgggccac
tgggtggacgaagtgggcaaattctgctccaaagaatacctccacccactgcactacacc
gggcctcctacagagcggatgaggttgcagcaccaagtgaaaaaacacaatcttataata
gcctcttatgatgttgtacggaatgacatcgacttttttaaaaatatcaaattcaattac
tgtatcctcgatgagggtcacgtcatcaagaacggcaagacgaaactttccaaagccatc
aagcagttggctgccaacttccgcgtcatcctgtcaggaacgccaattcagaacaatgtc
ctggagctctggtcattgtttgacttcctcatgccgggcttcctcggaacagagcgtcag
tttgcagctcgctacggtaaaccaatcctggccagtcgcgacgccaaaagctcctcacgg
gaacaggaggcaggtgtcctggcgatggaggccctacatcgacaggtgctgcccttcctt
ctgaggaggatgaaggaggacgtcctccaggacctgcctcctaaaataatccaggactat
tactgcaatttaagtcctctccaggttcagctgtatgaagactttgcaaagtctcgggcc
aaggccagtgtggaggacagcatctccagcacctccacagaagaggaggaggagaagccc
aaactgaaggccactggccatgtcttccaggcgctgcagtatctgcggaagctgtgcaac
cacccgagtctggtgttaaccccgcagcatccggaatacaaacgcatctcggagcagctg
attggtcagaactccaacctgcgggacctgcagcacgcacccaaactctccgctctcaaa
cagctgctgttggactgtggcctcggagggggtggaggatcggaggggggcactgaggcg
gtggtggcccagcatcgagtgcttatcttctgtcagctcaagagcatgctggacatcgtg
gagaacgacctgctgaaagccaaactgccctccgtcgcgtacctgaggttggacggcagc
gtgccggctggccagcgccactccatcgtctccaggttcaacaatgacccctccatcgac
gtgctgctgctgaccacccatgttgggggtctgggtctgaacctgacgggggcagacacg
gtggtgtttgtggagcatgactggaaccccatgagggacctgcaggccatggaccgtgcc
cataggataggacagaaacgggtggtgaacgtgtacaggctgatcacacggggcacactg
gaggagaagatcatgggtctgcagaaattcaagatgagcatcgccagcaccgtcatcacc
caggacaacgcctgcatgcagagcatgggcaccgaccaggtgctcaacctgttcagcctc
gacaagggtgagaggggggagcagacggcctcctcctcagggaaggactccatgaagtcg
gtgctggacgggctgggtgagctgtgggaccagcagcagtacgacaccgagtacaacctg
gacagcttcatgacctccctgcagtag
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integrated database retrieval system
