Trematomus bernacchii (emerald rockcod): 117475613 Help Entry 117475613         CDS       T09643                                  Symbol hcfc1a Name (RefSeq) host cell factor 1a isoform X1   KO K14966   host cell factor 1 Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben03083   Polycomb repressive complex tben04980   Cobalamin transport and metabolism tben05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:tben00001]  09120 Genetic Information Processing   09126 Chromosome    03083 Polycomb repressive complex     117475613 (hcfc1a)  09150 Organismal Systems   09154 Digestive system    04980 Cobalamin transport and metabolism     117475613 (hcfc1a)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     117475613 (hcfc1a)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:tben01009]     117475613 (hcfc1a)   09182 Protein families: genetic information processing    03036 Chromosome and associated proteins [BR:tben03036]     117475613 (hcfc1a)    03029 Mitochondrial biogenesis [BR:tben03029]     117475613 (hcfc1a) Protein phosphatases and associated proteins [BR:tben01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      117475613 (hcfc1a) Chromosome and associated proteins [BR:tben03036]  Eukaryotic type   Histone modification proteins    HAT complexes     NSL complex      117475613 (hcfc1a)    HMT complexes     COMPASS/SET1 complex      117475613 (hcfc1a)     MLL-HCF complex      117475613 (hcfc1a)    Polycomb repressive complex (PRC) and associated proteins     PR-DUB complex      117475613 (hcfc1a) Mitochondrial biogenesis [BR:tben03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     117475613 (hcfc1a) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Kelch_5 Kelch_3 Kelch_4 Kelch_1 Kelch_6 fn3 PRP3 Motif Other DBs NCBI-GeneID:  117475613 NCBI-ProteinID:  XP_033977809 LinkDB All DBs Position Unknown AA seq 1670 aa AA seqDB search MSAPGSTASVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNT ATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLK AKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSV VGWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTLDIDTLTWNK PSVNGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSN CWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLETERP HAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPATASATMIASPVQPLNSP KGPALAVAAPSAQNLPQTAVLKVAAQQSGTGTSIVTVRPSQPGKSPVTLTSLPPGVRMVM PAQTTQGSPIGSSPQMSGMAALAAAAAATQKIPPSGGTVLNVPAGATILKTVAMSPGTTT MKMASPLMVSNPATRMLKTAAAQVGTATGSSATNTRPIITVHKSGAVTVAQQAQVVTTVV GGVTKTITLVKSPLTMGGSGTLISNLGKMMSVVQTKPVQTSITGQVSNNPLTQLLQSKGP LPAGTILKLVTSADGKPTTIITTSQAGGTGHKPTILNISGVSPNTNKQGTTIIKTIPMSA IMSQSGAAGLNSRVTSSGGMKTPITILTTKVMTTGTPSKFITAVPKLATAGQQGLTQVVL KGAHGQPGTILRTVPMSTVGGVRLVTPVTMSSVKPNVTTLVVNRTTGVTTFGTVTGTVSS SLAGAAADSSNASLVTPITTLGTIATLSSQVISPASITVSAAQTSMTSATTLSSSTMTVQ NQPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSSEAGASGDGSGTVCSNPPCETH ETGTTNTATTASAAMGAGQVCSNPPCETHETGTTNTATTASSNMSTPRMCSNPPCETHET GTTNTATTASSSMGGVQKVCSNPPCETHVTGTTNTSTQSSSNMSTGQTSTSAQRVCSNPP CETHETGTTNTPSTTTSSMGGDQSSAAGGPVQRVCSNPPCETHETGTTNTATTATCTMET GEGQQTEEGAESTTSTEVDPTTAATSTVTTTTTTQGRAITTVTQSTPAPGPSVPSISSIS AGSPEEPMQTDETASAEAAPAGEGASAMETQAEGEAAAATALNLPSELMAEAQGATLMVT GLSDEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMNEASGESQQPTTIPIMLT QQELAALVQQQQQLQLQEAQAVAQQASAEANLPTEGLAPADSLNDPSVESNGHNEMAAAV TSAVASLLPRTTAETLAPSSTFAPSVSVASPAKLQAAAALADVANGIEGSKQAPQPTPVK AVVKKDNQWFDVGIVKVTNMVVTHFYMPGDESQGDDDSGNMPDYSQMKKMELQPGTAYKF RVAGINACGRGSFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYS VYLAIQSNQTAEAKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAA RNEKGYGPATQVRWLQESGKDAASAKPAPKRPGTSPDTKAAGPKKARTDQ NT seq 5013 nt NT seq  +upstreamnt  +downstreamnt atgtctgcccctggctccacggcgtcggttctgcagccgcggtggaagcgggtcctcgga tggtccggtcccgttccccggcccaggcatggacacagagctgtggccataaaggagctt atggttgtcttcggtggtggaaacgaaggaatagtggatgaattgcatgtttacaacact gcaacaaaccagtggtttatcccagcggtccgtggtgatattccccctggctgtgctgca tatggttttgtatgtgatggcacacgattgctggtgtttggtggaatggtggagtatgga aagtacagcaacgatctctatgaacttcaggccagcagatgggaatggaaaaagttgaaa gcgaaaaacccgaagaatggcccccctccttgtcctcgtctgggccacagtttttccctg gttggcaataaatgctacctgtttggtggacttgccaatgacagcgaggacccaaaaaac aacattcccagatacctaaatgatctgtacacacttgagctgcgtgcgggatccagtgtg gttggatgggatattccgatcacatacggagtccttcctcctccgcgtgagagccacact gctgtggtctacacagaaaagacgagcaggaaatctcgcctgataatctacggaggcatg agtggttgtcgccttggagatctgtggacacttgatatcgataccctgacatggaacaaa ccatcagtaaacgggacagcaccgctacccagaagtcttcactctgccaccaccatcaca aacaagatgtatgtttttggaggatgggttccattggtaatggatgacgttaaagtggcc acacacgagaaggagtggaagtgcacaaacactctcgcctgcctaaatctagactccaat tgttgggagaccgtgttgatggatactcttgaagacaacatccctagggcccgtgccggc cactgtgccgtggccatcaattcccgactctacgtctggagtggccgcgacggttatcgc aaagcttggaacaaccaagtctgttgtaaagacctctggtacttggaaacagagcggcca catgctcctgccagggtgcagctagtccgtgccaacacaaactctctcgaggtcagctgg ggcgccgtctcaaccgctgacacctacttactgcagctgcagaagtacgacatcccagca actccagctacagcctctgcaactatgattgccagccccgtgcagcctctgaactctccg aagggccccgcactggctgttgcagctccttctgctcagaatctcccccagacagcagtc ttgaaggttgcggctcaacagtctggcactggcacatctattgtcacagtccgccccagc cagcccgggaaatcccccgtcactctgacatccctcccgccgggtgtaaggatggtcatg cctgcccagaccacccaaggatcgccaattggaagtagccctcagatgagtggcatggca gctttagctgctgcagctgcagcaacacagaagatcccgccctctggtggcactgtcctc aatgttcctgccggggccaccattctcaaaactgtagccatgtcccctggcacaaccaca atgaaaatggcttctccactcatggtcagtaacccagccacccggatgctgaagaccgct gcagcccaggtgggaacagctactggttcctctgccaccaacaccagacccatcatcact gtgcataagtctggagcagtcactgtggcccagcaggcccaggtggttaccacagtggtg ggaggagttaccaagaccatcaccctggtcaaaagtcccctcaccatgggcggcagtggc actctgatctccaaccttggcaagatgatgtctgtggtacaaaccaagccagtgcagaca tctatcacaggccaggtctccaataaccctctcacacagctcctacagtcaaagggtccc ctcccagccggcaccatccttaagctggtgacctccgcagatggtaagcccacaacaatc atcacgacctcccaggcaggaggcactggacacaagcccacgatcctcaacatcagcggg gtctctcctaacaccaataagcagggcaccaccatcattaagaccatccccatgtctgca atcatgagccagtctggagctgcaggtctaaactcacgtgtgacaagcagtggaggcatg aagacgccaatcacgatcctcaccaccaaagtgatgactacaggaactcccagtaaattc atcactgcagtgcccaaactcgccactgccggacaacagggactcacacaggtcgtcctg aagggtgctcatggacaacctggcactatcctgcgcactgtgcctatgagcacagttggt ggtgttcgacttgtgacaccagtgaccatgtcttctgttaagcccaatgtgaccactctg gttgtcaataggacgacaggtgtcaccacttttgggacagtcaccggtaccgtctcctcc agcctggcaggagccgctgcagacagctccaacgcctctctggttacccccatcaccaca ctgggaaccatcgccaccctgtccagccaggtcatcagcccggcgtccataactgtgtca gccgctcagaccagcatgacctctgccaccaccctctcttcctccaccatgacggtgcag aaccagcccacccaggtgactctgatcacaactcccagcggtgttgaagctcagccagtg caggacctaccagtgtccatcctggcttcacccacctccgagcagcccagctcctctgaa gccggagcgtctggcgatggctctggcaccgtgtgctccaacccgccctgcgagacccat gagaccggcaccaccaacacggccaccaccgcctccgctgcgatgggagcaggacaagtg tgctccaacccgccctgcgagacgcacgaaacgggcacaacaaacacagccacaacggct tcatcaaacatgtcgacgccacgcatgtgctctaacccgccgtgcgagacccacgaaacc gggacgaccaacacggccaccacagcgtccagcagcatggggggagtccagaaggtttgc tccaacccgccctgcgagacccacgtgacgggtaccaccaacacatccacccagtcgtcc tccaacatgagtacgggccagacgagcaccagcgcgcagagggtgtgctccaacccgcct tgcgaaacacacgagaccgggaccaccaacaccccgtccacaaccacctccagcatgggg ggagaccagagcagcgcagcaggaggcccggtccagagagtgtgctccaacccgccctgc gaaacacacgagaccggcaccaccaacacagccaccacagccacctgcaccatggagaca ggcgaaggccagcagacggaggagggagcagaaagtaccaccagcacggaagtggacccc accactgcagcaacaagcactgtcaccaccaccaccaccacccagggcagggccatcact actgtcactcagtccacacccgctcccggaccctctgtaccctcgatctcatccatctca gccggctccccagaggagcccatgcagacggatgagaccgcatcagcagaagctgcacct gctggagaaggagcgtctgctatggagacacaagccgagggtgaagcagccgcagctaca gccttgaatctgccctcggagctgatggccgaggctcagggcgccacactgatggtgacg gggctgtcggacgaggagctggctgtgactgcagcagcagaggccgctgctcaggcagct gcgactgaagaagcccaggcgctcgccatccaggccgtcctccaggcagcacagcaagcc gtaatgaatgaggcctctggagagagccagcagcccaccaccatccccatcatgttgacc cagcaggagctggcggcgctggtccagcagcagcagcagctgcagctgcaggaggctcaa gccgtggcgcagcaggccagcgcggaggccaacctgcccactgagggcctggcccccgca gacagcctcaacgacccctccgtcgagagcaacggacacaatgagatggcagccgcagtc accagcgctgtggcctcactgctgccacgcaccactgctgagacactcgctccttcgagc acatttgctccatctgtatcggtggcaagtccagccaagctgcaagcagcagccgccctg gcagatgtggccaatgggatcgagggatcgaaacaagccccacagccaaccccggtgaag gctgttgtaaagaaagacaaccagtggttcgatgttggaatcgttaaagtgacaaatatg gtcgtgacccacttctatatgccaggagatgagtctcagggagatgatgactctggcaac atgccagactacagccaaatgaagaaaatggagctgcagcctggcacagcttacaagttt cgtgttgctggaatcaacgcttgtggccgtggatctttctcagagatatccgctttcaag acctgcctaccaggcttcccaggggctccttgcgccatcaaaatcagcaagagccccgat ggtgcccacctgacctgggagccgccctctgtgacgtcggggaagatcatcgagtactct gtgtacctggccatccagagcaaccagacagccgaagccaaggcctccaccccagcgcag ctagccttcatgcgcgtgtactgcgggcccaacccctcctgcttggtgcagtcgtccagc ctctccaacgcccacatcgactacaccaccaagcccgctatcatcttccgcatcgccgcc cgtaacgagaagggctacggccccgccacccaagtccgatggctgcaagaatccggcaaa gacgccgcctctgcaaaaccggccccaaaaagaccaggcacctctcctgatactaaggct gccggtccaaagaaagcgaggacggaccagtga

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