Trematomus bernacchii (emerald rockcod): 117475756
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Entry
117475756 CDS
T09643
Symbol
si:dkeyp-44a8.4
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117475756 (si:dkeyp-44a8.4)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117475756 (si:dkeyp-44a8.4)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117475756
NCBI-ProteinID:
XP_033977987
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All DBs
Position
Unknown
AA seq
617 aa
AA seq
DB search
MFIQRTVKQDFTMDTASHSIGESKPVCEFAPKSSVQRWLPGFPIALCLLLSMSSITVCLL
MSLKTFQLESRMQMEMDKASIFQPPHRACLNEDGTLTPELSSSVGKFVEEKVVVLLPKLR
TTRDVGQECSCPPGPPGKRGRMGRRGEAGLPGKAGRDGYPGPLGLDGKPGSPGPKGSQGP
AGPKGDKGDQGDVGPRGPSNYSPYAGLHSNQILTVKGDQGQAGAAGPPGPPGPPGPRGPP
GNTGKDGPRGPAGESGFPGRDGVEGPQGTPGKTGEDGGPGYPGSQGPQGAKGEAGTGEKG
ERGMDGLQGFRGDKGEIGEQGPLGSMGYPGEKGDAGSSDIIDFNGKLLDAFQGPPGPPGP
SGPTGEKGELGLPGPAGFDGQKGPQGDIGEEGPAGHTGEKGEMGLSGPAGMDGHKGEKGD
CRIEDNLVQMISQPGPPGPPGIPGAPGSMGLHGMPGPKGEPGYGMKGEQGDYGAPGPKGL
DGPMGLSGSTGLVGLPGSKGEKGRTGEPGLDGFPGLMGGKGDRGERGDKGDRGSVGKRGL
KGQKGEQGPPGLDQPCPVGCGETKGVSPPPPPPPPPSGPEAPCPVGQDGLPIPGCWHKGH
FEEMAKQKLKRKRLSQP
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgttcatccagaggactgtaaagcaggattttacaatggatacagccagccactctatc
ggggaaagtaagcctgtgtgtgagtttgcgcccaagtcttcggtgcagcggtggcttcca
ggttttcccatcgctctgtgcctgctgctgtctatgagctccatcaccgtgtgtcttctg
atgagcctcaagaccttccagctggagagccgaatgcagatggagatggacaaagcctcc
atcttccagccgccgcacagggcttgtctaaacgaggatgggaccctaactccagagctg
agctcatcagtagggaaattcgtggaagagaaagtggtggtgctgttgccgaaattaagg
acaactagggacgttggccaagagtgctcctgccctccagggcctccaggaaagcgtgga
cggatgggaagaagaggggaagccggcctgcctggcaaggctggacgggatggatacccg
ggtcctcttggcttggatgggaaaccaggttctccaggtcctaagggaagccagggacca
gccggacccaagggagataagggtgaccaaggagacgttgggccaaggggtccttctaac
tacagcccatatgcaggtctgcacagtaatcagattctcaccgtcaagggtgaccaaggc
caggctggcgccgctggtcctcccggtcctccgggcccccccggccccagaggcccccct
ggaaacacaggcaaggatggtccacgtggccctgctggagagtcggggtttccaggtcgt
gatggtgttgaggggccacaaggaacgcctgggaagacgggagaagatggtgggcccggg
tatccaggatcacagggtcctcaaggagcgaagggcgaggcaggtacaggagaaaaagga
gaaagaggcatggatggacttcaaggatttaggggagacaaaggagaaataggagagcaa
ggaccactgggatcgatgggttatcctggtgaaaaaggcgacgcaggctcctcagacatc
atcgacttcaatgggaagcttctagatgctttccagggcccacctggaccacctggaccc
tcaggcccaacaggggaaaagggtgagcttggtttacctgggccagcaggatttgatgga
cagaagggacctcaaggtgacataggtgaggagggaccagctggccacacaggagagaag
ggggagatggggctctctgggcctgctggaatggacggtcataaaggagagaagggcgac
tgcaggatagaggacaacctggttcagatgatttcacagccgggcccacctggcccacca
ggaattcccggggcccctggatccatggggttgcatggtatgcccggtcctaagggtgag
cctggatacgggatgaagggagagcagggggattatggtgctcctggccccaaaggatta
gatggtcccatgggactaagtgggtctacagggttagtgggccttccaggttcaaaagga
gaaaaaggcagaacaggagagcctggactagatggtttcccaggtctgatgggaggcaag
ggtgatcgaggggaaagaggagacaagggtgacaggggatcagtgggaaagagaggacta
aagggccagaagggagagcagggtcctccaggcctggaccagccttgtcctgtgggttgt
ggtgagactaaaggtgtttctccccctccacctcctcctcctcctccttctggccctgag
gccccctgtcctgtgggacaggacgggctgcccataccaggctgctggcacaaggggcat
tttgaggaaatggcgaaacagaagctcaaacgcaagcgtctctctcagccctga
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