Trematomus bernacchii (emerald rockcod): 117476214
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Entry
117476214 CDS
T09643
Symbol
col6a4a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
tben04518
Integrin signaling
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117476214 (col6a4a)
04518 Integrin signaling
117476214 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117476214 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117476214 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tben04147
]
117476214 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117476214 (col6a4a)
Exosome [BR:
tben04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117476214 (col6a4a)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117476214 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
117476214 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
VWA_CoxE
Kunitz_BPTI
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
117476214
NCBI-ProteinID:
XP_033978481
LinkDB
All DBs
Position
Unknown
AA seq
3054 aa
AA seq
DB search
MKGRTRIFLGVIIAAYFSGIAALTTDCENATVADIVFLVDGSSSIDKKNFVKVKGFLRSV
IKDLNIGWKKVRIGVAQHSDETYEVFLLKDHVDKRSMMIAVENMAYQEGGTETGKAIDFL
RTQYFTEEAGSRAGQGVPQIAVVITDGDSTDDVIAPAQRLRQQGVIVFGIGVGEANLQQL
ESIANRPPERFLSYISNYAALQTLKDSLLKTVCISVEDQKQALTDRFADIFFMLDGSMAP
GMVPGVISNLVELIDRLNASASTYRIGLAQYGEDTKVEFSLEKFKNKQKTIETVKRFRLR
PKTNKPADLGGALINANTHLFTSEAGGRAHQGSRQYLVVMSAKDSKRSVYRDAELIKSSG
VTLIGMSAGASMESIESFASTDYAYNTSNVLILEDVILTEKKENITEDCKGAKVADIVFI
VDESGSIGNENFRLMRKFLHLIVSSLDVSPNRVRVGIVTYNDVSTPQVFLNSFNDTDELL
EYIKILPYNGGGTKTGEALNFTRENVFVKEKGCRKENGVQQVAVVITDGESQDEVSEAAI
TLRRAGVTIYAVGIKDAIESELLEMASHPPDQHVFTRESFTELTHLKQTLQKILCKNIIA
KAVPRKTETKEGLKQFFVYCENATVADIVFLVDGSSSIDKKNFVKVKGFLRSVIKDLNIG
WKKVRIGVAQHSDETYEVFLLKDHVDKRSMMIAVENMAYQEGGTETGKAIDFLRTQYFTE
EAGSRAGQGVPQIAVVITDGDSTDDVIAPRPAPEAAGSHRIGIGVGEANLQQLESIANRP
PERFLSYISNYAALQTLKDSLLKTVCISVEDQKQALTDRFADIFFMLDAGVNHLRFDQIY
LMSSRLSNRLNASASTYRIGLAQYGEDTKVEFSLEKFKNKQKTIETVKRFRLRPKTNKPA
DLGGALINANTHLFTSEAGGRAHQGSRQYLVVMSAKDSKRSVYRDAELIKSSGVTLIGMS
AGASMESIESFASTDYAYNTSNVLILKDVILTEKKENITEDCKGAKVADIVFIVDESGSI
GNENFRLMRKFLHLIVSSLDVSPNRVRVGIVTYNDVSTPQVFLNSFNDRTELLEYIKILP
YNGGGTKTGEALNFTRENVFVKEKGCRKENGVQQVAVVITDGESQDEVSEAAITLRRAGV
TIYAVGIKDAIESELLEMASHPPDQHVFYPESFTELTHLKQTLQKILCKNIIAKAVPRKT
ETKEVCVKTDEADIFFLMDDSGSITWQDFKDMQNFLNKFIEHFQIGPQQVRIGLVKYADS
PTDEFDLTNHSDTKSLVKAINSIHHAGGGTETGKALSHLGRLFKRAADTRDHEAPKYLIV
LTDGKSTDEVEAPAKELRDQGIIIYAIGVKDSSQTQLEEIAGDPKRTISVRNFDTLKSIN
NDIIREICSEDACRDIQGDXLFLTDSSESIEEVEFQKMKHFMKSVISKSAIGENKVHVGV
MQFSTSYNLEIPLNQYYSKVNISKAIDDMKQMNAGTSTGKAITEVSRYFEVARGGRPGMR
QNLIVITDGKAQDEVRGPAEALRKKGVVIYSIGVKNHNRTQLMEISGHSDRVYSEKDFDA
LKDLEAQVSSKICERECKMETADIIFLVDSSRISQIQYESMRKFMASIVNQTKVGTSLTR
FGLISYSDEPRTHFKLNAYDSKRNVLAAIPTVKPEGGGTYTDKALSYSLEYFNAEHGGRE
VPQILIVITDGAANIPSNLKGPADKLREHGVTVISVGVKEADRNQLLTIAGNNGSSFFVD
NFEALETLHNDMSSVLCNATKQGCKGKKADLIFLLDRSSSINLEEHDMIKNFTVSLVNSF
IISENWVRIGLAQFSDEPQDEFDLNRYFKKEDLIGHIQNLKYTGGNTFLGKALDNISKYF
DDSRGVPKNLVLISDGDSHDDVEDAADYLRIHNISVFAIGRWSRSRSNPNPTHTFTTAPL
PHPLAPKAGKYMFPFATDCSIDIAMGFDISQRTAGEKLVSGHTHAPEFLPEIASSVSSVK
TLCCVGPDPIQPKIAFQVLDSDGRSLYDTDFEAYSKEVVDKVMEVQMSGPTYFKTAMLNS
FKQRFLDKSKADVKVLVIFSDGLDEDVMKLEHEAELLRQSGVSALFTVALEGTRDPAQLQ
MVEFGRGFEHKLPLSIGMPSVGSTILKQIDTLSDRKCCNVMCKCLGYEGIRGSRGTLGSK
GEPGLRGHPGFPGEEGHSGGGGPPGPSGPQGLQVCPGVRGQKGYRGVSGNHGGDGDVGLD
GVYGEQGLAGSDGAQGERGDSGNPGIPGIRGEAGVAGQRGLRGDPAEPGVDNTSPGAKGN
PGNPGPPGLSGVDAEPGGAGDVGFKGADGRRGYVGEKGSPGGPGVRGTEGNPGASGPQGL
RGGEGEQGEEGTSGSSGPQGGAGPAGGPGLSGRRGATGQKGQPGELGGEGDPGSPGPQGL
PGQDGRDGYGPPGPNGAEAADGRRGYVGEKGEDGRQGTKGFNGTRGNRGRGGSSGGSGGP
GTPGDPGHPGHRGPKGPPGLRVKTECQLISLIRDNCECHQGASSCPAFPTELVLGLDMSE
DVTPVAFERQRSALLSLLEDVSVSESNCPAGARVAVVGFSAHTKYLIRFQDYRTKTQLLE
LLRNVALETTSSRRQLGAAMRFVGQHVFKRVRAGVMMRKVAIFLSSGPSQDVEDIVTATM
EYRGLNIVPAVISLKNDPDVAKALEVDDSGSSMFTVLRRTADLMKVKNCAICYDPCQRSQ
QCSFILDPLPPQEADVDLVLVLDSSREVQADEYAGMQQLLGSVVEQLAVSPTPRRAGSGA
RVALIQQSGFRAPKVEFGFGTFQTSGQMKRHLMNMTQQGGSSALGFTLDSALTELLLKAA
QPRSRRVVLTLVGTSTAPQDRAQLSYVSQKAQCEGVAQFVVTVGERYDRRQVEEVAGGPL
LQHLIHLDRLKAEEQSYTQRFFRVFLSALSKGVIKYSPPSLSCSELRDPAETQQINGLGE
KFEDRTGGRTESRGDEVILLAGAESIDVCLLWKDPGPCKDFKVKWFFNSKQRRCSRFKYG
GCHGNANRFDMQTDCEKLCVTSEEEVRGRGRGERKRRGRAQDTMKKSTVTQEYL
NT seq
9165 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaagaacgagaattttcctcggcgttatcatagcagcgtatttctctggcatc
gctgctctgacgacagattgtgaaaatgccaccgtggccgacatcgtcttcctggtggac
ggatcctccagcatcgacaagaagaacttcgtgaaggtcaaaggttttctcagaagtgtc
atcaaggacctcaacatcggctggaaaaaggttcgtatcggcgtggctcagcacagcgat
gaaacttacgaggtgtttctgctgaaggatcacgtggataagagatccatgatgatcgca
gttgaaaacatggcctaccaagaaggaggcacagaaacaggcaaggccatcgacttcctc
cggacgcagtatttcacggaggaagccgggagcagagccggccaaggggtgcctcagatt
gctgtggttatcacggatggagactccacggacgatgtgatcgcacccgcccagcgcctg
aggcagcagggagtcatcgtatttggcatcggggtgggagaagccaacctgcagcagctc
gagtccatcgccaaccggcctccagagcgcttcctgtcctacatcagtaactacgcggct
ctgcagacgctgaaagacagtctgctgaaaactgtgtgcatctcagtggaggatcagaag
caagcattgacagacaggtttgcagatatctttttcatgctggacggtagcatggctcca
ggaatggtcccgggggtcatatctaacttggttgaattgatcgatcgtctcaatgcctca
gcgtccacctaccgtattggtttggcccagtacggtgaagataccaaggtcgaattctcc
cttgagaaatttaaaaacaaacagaaaaccatcgaaactgtcaagcgtttccgcctgcgc
ccaaaaaccaacaaaccagctgacctgggcggtgccctgatcaacgccaacactcacctt
tttaccagtgaggctgggggccgtgcgcatcaaggctcccgacagtatctggttgttatg
agtgcaaaagactccaaacgctccgtgtatagggacgctgaattgatcaaatcatcgggg
gtaactcttataggaatgagtgcaggtgcaagtatggaatcaatcgaatcatttgccagt
actgactatgcatataatacttcaaacgtgttaattttggaggatgtcatcttgactgag
aaaaaggagaacattactgaagattgcaaaggagcaaaggtggcagacattgtgttcatc
gttgacgagtcgggaagcattggaaatgaaaactttcggctcatgcgcaaattcctgcac
ttgatcgtgagcagcttggatgtaagtccgaatagagtcagagtgggcattgtcacgtac
aacgatgtctccacaccacaggtcttcctcaactcattcaacgacacggacgaattgctt
gagtacattaagatcctgccttacaatggaggtggtacgaagactggagaggccctgaat
tttactcgggaaaacgtctttgttaaagagaagggctgcaggaaagaaaacggtgtccaa
caggtggcggtggtcatcactgatggtgaatcccaggatgaagtgagcgaagcagcaatt
actctgcgtcgagccggtgttaccatttacgctgtaggaataaaagatgccatcgagagc
gaactgttggaaatggcttcacaccctcctgatcagcacgtttttacccgggaaagtttc
accgagctgacgcacctgaagcagaccctgcagaaaatcctgtgcaaaaacatcattgcc
aaagcagtcccaaggaaaacagaaaccaaagaaggtttgaaacagttttttgtttattgt
gaaaatgccaccgtggccgacatcgtcttcctggtggacggatcctccagcatcgacaag
aagaacttcgtgaaggtcaaaggttttctcagaagtgtcatcaaggacctcaacatcggc
tggaaaaaggttcgtatcggcgtggctcagcacagcgatgaaacttacgaggttttcctg
ctgaaggatcacgtggataagagatccatgatgatcgcagttgaaaacatggcctaccaa
gaaggaggcacagaaacaggcaaggccatcgacttcctccggacgcagtatttcacggag
gaagccgggagcagagccggccaaggggtgcctcagattgctgtggttatcacggatgga
gactccacggacgatgtgatcgcaccccgcccagcgcctgaggcagcagggagtcatcgt
attggcataggggtgggagaagccaacctgcagcagctcgagtccatcgccaaccggcct
ccagagcgcttcctgtcctacatcagtaactacgcggctctgcagacgctgaaagacagt
ctgctgaaaactgtgtgcatctcagtggaggatcagaagcaagcattgacagacaggttt
gcagatatctttttcatgctggacgccggtgttaaccatttacgcttcgaccagatttat
ttgatgtcttccagactatcgaatcgtctcaatgcctcagcgtccacctaccgtattggt
ttggcccagtacggtgaagataccaaggtcgaattctcccttgagaaatttaaaaacaaa
cagaaaaccatcgaaactgtcaagcgtttccgcctgcgcccaaaaaccaacaaaccagct
gacctgggcggtgccctgatcaacgccaacactcacctttttaccagtgaggctgggggc
cgtgcgcatcaaggctcccgacagtatctggttgttatgagtgcaaaagactccaaacgc
tccgtgtatagggacgctgaattgatcaaatcatcgggggtaactcttataggaatgagt
gcaggtgcaagtatggaatcaatcgaatcatttgccagtactgactatgcatataatact
tcaaacgtgttaattttgaaggatgtcatcttgactgagaaaaaggagaacattactgaa
gattgcaaaggagcaaaggtggcagacatcgtgttcatcgttgacgagtcgggaagcatt
ggaaatgaaaactttcggctcatgcgcaaattcctgcacttgatcgtgagcagcttggat
gtaagtccgaatagagtcagagtgggcattgtcacgtacaacgatgtctccacaccacag
gtcttcctcaactcattcaacgaccggaccgaattgcttgagtacattaagatcctgcct
tacaatggaggtggtacgaagactggagaggccctgaattttactcgggaaaacgtcttt
gttaaagagaagggctgcaggaaagaaaacggtgtccaacaggtggcggtggtcatcact
gatggtgaatcccaggatgaagtgagcgaagcagcaattactctgcgtcgagccggtgtt
accatttacgctgtaggaataaaagatgccatcgagagcgaactgttggaaatggcttca
caccctcctgatcagcacgttttttacccggaaagtttcaccgagctgacgcacctgaag
cagaccctgcagaaaatcctgtgcaaaaacatcattgccaaagcagtcccaaggaaaaca
gaaaccaaagaagtttgtgtaaaaacggatgaagcagacatcttcttccttatggatgac
tcaggaagcattacatggcaagacttcaaagacatgcagaacttcctcaacaagtttata
gaacacttccaaattggaccacaacaagtccgcattgggcttgtgaaatatgctgattcc
ccaactgatgaatttgatctgacaaaccactccgatacaaagtcattggtgaaggccatc
aacagtatacatcacgcaggaggtgggacggagacaggaaaagcactttcacacttgggc
agactctttaagagagcggcggacacgcgtgatcatgaagccccaaagtacctgattgtc
ctcacagatggaaagtccactgatgaggtggaggctcctgcaaaagaactgagggaccag
ggaatcattatctacgccattggggtgaaagattcatcccaaactcagctagaagagatt
gcaggagaccccaagaggactatctccgtcagaaattttgataccttgaaatccatcaac
aatgacatcatcagagaaatctgttctgaagacgcctgcagagacatacagggcgacnat
cttttcctcactgacagctccgagagcatcgaagaggttgagtttcagaaaatgaaacac
ttcatgaaatctgtcatcagcaagtcggccatcggggagaacaaggtgcacgtcggtgtc
atgcagttcagtaccagctacaatctggagattcccctcaaccaatactacagcaaagtt
aacatttcgaaagccattgatgatatgaagcagatgaatgcaggtacgagcacaggaaag
gccatcacagaggtttcaaggtatttcgaagtggccagaggagggcgtcctggcatgagg
cagaatctgatagtgattacagacggcaaggcacaagatgaggtcaggggtcccgctgag
gctctgaggaaaaagggagtggtgatctactccatcggagtgaagaatcacaaccgcacc
cagctgatggagatcagcggtcattctgacagggtttattctgagaaggactttgatgcg
ctgaaggacttggaagcccaggtttcctcaaagatttgcgagagagaatgtaaaatggaa
acagccgacattattttcctggtggacagctccagaatatctcaaatacagtatgaaagc
atgcggaagtttatggcatcaatagtgaaccaaaccaaagttggcaccagcctgactcgt
ttcgggcttatttcctactcagatgaaccccggactcattttaaactgaacgcctacgac
tccaaacgtaatgttcttgcagcgataccaactgtgaagccagaaggaggaggcacctac
acagacaaagccttgagctactctctagagtactttaatgccgaacatggaggccgggag
gtgcctcagattctcatagtgatcacagacggagctgcgaacataccttcaaacctaaag
ggtccggctgataaactgcgagaacacggggtcaccgtcatcagtgtcggagtgaaagaa
gcagatcgaaatcagctgttgaccattgctggcaacaacggcagcagtttctttgtggac
aattttgaggccctagaaactctgcacaacgatatgtcttctgtcctttgcaatgccaca
aaacaaggatgtaagggaaagaaggccgacctgatcttcctactcgatcggtcaagcagc
attaatttagaagagcacgacatgataaaaaacttcacggtaagcctagtgaacagcttt
atcatcagtgaaaactgggtgcgtattggactcgcacagttcagcgatgagcctcaggac
gagtttgacctcaacaggtacttcaagaaggaggatttgatcgggcacatccaaaacttg
aaatacactggtggaaacacattcctcggaaaagccttggataacataagcaaatacttt
gacgacagtcgtggggtcccgaagaatctggtgttgatctcagatggcgactcgcatgat
gacgtggaggatgcagctgactatctcaggatacataacatttcggtgtttgccatcggc
cgttggtccaggtccagatccaaccccaaccccacccacaccttcaccaccgcccccctc
ccacaccccctcgcccccaaagcaggtaaatacatgtttccctttgctacagactgcagc
atcgatatcgccatgggattcgatatttctcagagaacagcaggggagaagctggtcagc
ggtcacacccatgctcctgagttcctgccggaaatcgccagttccgtgtcttcggtgaaa
accctttgctgcgtcggtccagatcctatacagcccaagattgctttccaagtgctggat
agtgacgggcgttccttgtacgacacagactttgaagcctacagcaaggaagtggtggac
aaagtcatggaagtgcaaatgtcagggcctacttacttcaagacggccatgctgaactcc
ttcaagcagaggttcttggacaagtccaaagctgatgtgaaggtgctggtgatcttctca
gacggactcgatgaagacgtgatgaaactggagcatgaagcagagctgctgcgtcagtct
ggggtcagcgctctgttcaccgtggccctggaggggacccgcgaccccgcccagctgcag
atggtggagttcggaagagggttcgagcacaaactccctctgagcatcggcatgccgagc
gtgggcagcaccatcctcaaacagatcgacacgttgtcggacaggaagtgctgcaacgtc
atgtgcaaatgtttgggatacgaaggcatccgtggttctcgcggcaccctggggtcaaag
ggcgagccggggctgaggggtcatccgggattcccgggggaggaaggccactccgggggg
ggcgggcctcctggacccagcggacctcagggcctccaggtctgtcctggagtcagagga
cagaagggctaccgaggcgtctccgggaaccacggcggagacggagacgtcggactggac
ggagtctatggagaacagggactggcaggatctgatggagctcaaggagaaagaggagac
tcaggaaacccaggtatcccgggcatcagaggtgaggcgggggtggcaggacagcgagga
ctgagaggagatccggcggagcccggcgttgataacaccagccctggagccaaaggaaac
cctgggaaccccggacccccgggtttatccggagtggacgcagaaccaggcggtgcagga
gacgttggattcaagggtgccgatgggagaagaggctatgtgggggagaagggttcacct
ggagggcctggggttcgaggaactgagggcaaccccggtgcttcaggtccacagggcctc
agaggcggagaaggtgaacaaggagaggaagggacctctggctcctccggacctcagggg
ggggcgggaccagctggaggcccggggctatccggacgccgcggcgctactggacagaag
ggccaaccaggggagctggggggtgagggggacccagggtcaccaggaccccaaggactg
ccgggtcaggatgggagagacgggtatggacctccaggaccaaacggtgcagaggctgcc
gatgggagaagaggctatgtgggggagaagggagaggacggccggcagggaactaaaggg
ttcaacgggacgagagggaaccgagggcgaggggggagctcaggcgggtcgggaggacca
ggaacgcctggagatccgggacatccaggacaccggggtcccaagggtcctccaggactc
agagtcaagactgagtgtcagctgatctccctcatcagagacaactgtgaatgtcatcaa
ggggcctcttcgtgcccggccttccccacggagctggttctggggctggacatgtcggag
gacgtgaccccggtggccttcgagcggcagcgctctgccctgctgtctctgctggaggac
gtctccgtctccgagagcaactgtccggcgggggcccgggtggccgtggtgggattcagc
gcccacaccaagtacctgatccgcttccaggactaccggaccaagacgcagctgctggag
ctgctgaggaacgtggccctggagacaacgtccagccggcgccagctgggggccgccatg
cgtttcgtggggcagcacgtcttcaagcgtgtaagagcgggggtgatgatgaggaaggtg
gccatcttcctctccagcgggccgtcgcaggacgtggaggacatcgtcaccgccaccatg
gagtaccgcggcctcaacatcgtccccgccgtcatctcgctgaagaacgatcccgacgtc
gccaaggctctggaggtggacgactccggatcctccatgttcacggtgctgaggaggacc
gctgacctgatgaaggtcaagaactgtgccatctgttacgacccgtgccagcgctcgcag
cagtgctccttcatcctggacccgctgccgcctcaggaggcggatgtggacctggttctg
gttctggacagctccagggaggtgcaggctgacgagtatgccggcatgcagcagctgctg
ggctccgtggtggagcagctggccgtgagccccaccccccgcagggccggatcaggggcc
cgggtggccctcatccagcagagcggcttccgggcccccaaggtggagtttgggttcggg
accttccagacctccggccagatgaagaggcacctgatgaacatgacgcagcagggcggc
tcctctgcgctgggcttcactctggactcggccctgacggagctgctcctgaaggcagcg
cagccccgcagcaggagggtggtgctgaccctggtgggaaccagcacggccccccaggac
cgggcccagctcagctacgtctcccagaaggcccagtgtgagggggtggcgcagttcgtg
gtgacggtgggcgagcgctacgaccgcaggcaggtggaggaggtggcgggggggccactc
ctgcagcacctcatccacctggaccgactgaaggccgaggagcagagctacacccagcgc
ttcttcagggtcttcctctccgcgctcagcaagggagtgatcaagtattctcctccgtct
ctaagctgcagtgaactgagagacccagcagaaacacagcagatcaacggtctgggcgag
aagtttgaggatcggacgggaggacggactgagagccgtggagacgaggtgattctcctc
gctggagctgagagcatagacgtctgtctcctctggaaggaccccggcccctgtaaggac
ttcaaagtgaagtggttcttcaacagcaagcagaggagatgctctcgcttcaagtacgga
ggctgccacggcaacgcaaaccgcttcgacatgcagaccgactgtgagaaactgtgtgtg
acgtcggaggaagaggtgagaggaagaggaagaggtgagaggaagaggagagggagagcg
caggacacgatgaagaaatccaccgtgactcaggaatatctttag
DBGET
integrated database retrieval system
