Trematomus bernacchii (emerald rockcod): 117476504
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Entry
117476504 CDS
T09643
Symbol
tnpo1
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117476504 (tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117476504 (tnpo1)
03009 Ribosome biogenesis [BR:
tben03009
]
117476504 (tnpo1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117476504 (tnpo1)
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
117476504 (tnpo1)
Pre-60S particles
117476504 (tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
HEAT_2
Arm
Vac14_Fab1_bd
TOR1L1_N
IBN_N
Cnd1
TPR_IPO5
HEAT_EF3_N
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
HEAT_GCN1_C
MMS19_C
CEP104-like_TOG
HEAT_MROH2B_1st
UNC45-central
HEAT_GCN1_C_2
Dopey_N
VPS15-like_hel
HEAT_DAAF5
RTP1_C1
RXT2_N
Motif
Other DBs
NCBI-GeneID:
117476504
NCBI-ProteinID:
XP_033978989
LinkDB
All DBs
Position
Unknown
AA seq
891 aa
AA seq
DB search
MECEWKPDEQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDILDRPLNIMIPKFL
QFFKHNSPKIRSHAIACVNQFIISRTQALMLHIDPFIENLFALATDEEPEVRKNVCRALV
MLLEVRLDRLLPHMLNIIEYMLLRTQDQDENVALEACEFWLTLAEQPVCKEVLCGHLSQL
TPVLVNGMKYSEIDIILLKGDTEEDEAIPDNEQDIRPRFHRSRTVAQQHEEDGIEDDDDE
DDELDDDDDTISDWNLRKCSAAALDVLANVFREDLLQPILPLLKELLFHPEWVVKESGIL
VLGAIAEGCMQGMIPYLPELIPHLVQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK
PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAFILDTLVFAFSKYQHKNLL
ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIAKWNQLKDEDKDLFPLLECLSSVATALQS
GFLPYCEPVYQRCVNLVQKTLAQAMLYQSQPDQYEAPDKDFMIVALDLLSGLAEGLGGTI
EELVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP
ELISVCNNATWAIGEISIQMGSEMQPYIAMVLHQLVEIINRPNTPKTLLENTAITIGRLG
YVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIFFCDAV
ASWVNPKDDLRDMFYKILHGFKNQVGEDNWRRFSDQFPLPLKERLATFYGV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtgagtggaagccagacgagcaaggacttcaacaaattctacagctgctgaaa
gagtcccagtcgccagatacctccacacagagatccgtccagcaaagactcgagcagctg
aaccagtatcccgattttaacaactatttgatatttgttctgacaaagttaaaatcggaa
gatgaaccgacgcggtccctgagtgggctgatactgaagaacaatgtgaaagcccactat
cagaacttccctaatggcgtgtctgatttcatcaagagcgagtgcctccagaacatcgga
gactcgtctcctcttatccgggccaccgtgggtatcctcatcaccaccatcgcctcaaag
ggagagctacaaaactggccggagcttttacctaaactttgcctgctgctggattctgag
gactacaacacatgtgagggagcgtttggagccctgcagaagatctgtgaggactctgct
gagattttggacagtgacatcctggatcgtcctctcaacatcatgatccccaagttcttg
cagttttttaagcacaacagtcctaagattaggtctcatgccattgcctgcgtgaatcag
ttcatcatcagccggactcaggctctcatgctgcacatcgaccctttcattgagaacctg
tttgcactggcgacagatgaggaaccggaggtgaggaagaatgtgtgcagagctttagtc
atgctgctggaagtccgtctggaccgcctcctgccacacatgctcaacatcatagagtac
atgctactgaggactcaggaccaagatgaaaatgtcgccttggaggcctgtgagttctgg
cttactctggcagagcagccagtgtgtaaggaagtgctgtgtggacacctctctcagctc
actccggtgcttgtcaatgggatgaaatactccgagattgacataatcctgctcaagggg
gacaccgaggaagatgaggctattcccgacaacgagcaggacatcaggccgcgcttccat
cgctcacgcaccgtcgcccagcagcatgaggaagacgggatcgaggatgacgacgatgag
gatgatgagctggatgatgatgacgataccatctctgattggaacctgcgcaagtgttcg
gctgcagcgctggacgtgttggccaacgtgttcagggaggacctgctgcagcccatcctt
cccctcctcaaagagctgctcttccatccagagtgggtggtcaaagagtctggcatccta
gtgctgggggctatagctgaaggctgtatgcagggcatgatcccgtacctgcctgagctc
atcccccatctggtccagtgtttgtctgacaagaaggccctggtgcggtccatcacctgc
tggacactgagccgctatgcccactgggtggtcagccagcccccagatacttacctgaaa
cctctaatgacggagctgctcaaacgcattctggatagcaacaagcgtgtgcaggaggct
gcgtgcagtgcctttgccactctggaggaagaggcttgcacagagctggttccctacctg
gcgttcatcctcgacaccctggtgttcgctttcagcaagtaccagcacaaaaacctgctc
attctttacgacgccataggaacccttgcagactccgtggggcaccatctcaataaaccg
gaatacatccagatgttgatgcctccactgatcgcaaaatggaaccagctgaaagatgaa
gacaaagatctcttccctttattagaatgtctgtcgtctgtagccacggccctgcagagc
ggcttcctgccctactgcgagcctgtgtaccaacgctgtgtcaacctcgtgcagaagacc
ctcgctcaagccatgctttatcagtcacagccggaccagtatgaggctccagacaaagac
ttcatgatcgtggctctggatctcctcagtggactggctgagggtttgggaggcaccata
gaggagctggttgctcggagcaacatcctcacccttatgtaccagtgcatgcaggacaaa
atgccagaagtgcgtcagagttcttttgctctgctaggggatttaaccaaggcttgtttc
caacacgtcaaaccatgcatcgctgattttatgcccatactgggtactaatttaaaccca
gaattaatatcagtgtgcaacaacgcaacatgggcaatcggagagatatctatacaaatg
ggctctgaaatgcagccgtacattgccatggtgctgcaccagctggtggagatcattaac
aggcccaacaccccaaagaccctgctggagaacacagcaataacaattggtcgtcttggt
tacgtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctggtgcacc
tctctacgaaatataagagacaatgaggagaaagactctgcgttcagaggaatctgcact
atgatcagtgtaaatccaggaggtgtagtgcaggactttatattcttctgtgacgcagtg
gcctcctgggtaaatccaaaggacgatctaagagacatgttctacaagatccttcacggc
tttaagaaccaagtgggcgaggacaactggagacgcttctcagatcagttccccctgcca
ctgaaggaacgcctggcaaccttttacggggtgtaa
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