Trematomus bernacchii (emerald rockcod): 117476549
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Entry
117476549 CDS
T09643
Name
(RefSeq) nucleolysin TIA-1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117476549
03041 Spliceosome [BR:
tben03041
]
117476549
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117476549
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
117476549
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_ACIN1
Calcipressin
RRM_3
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
117476549
NCBI-ProteinID:
XP_033979065
LinkDB
All DBs
Position
Unknown
AA seq
388 aa
AA seq
DB search
MDDDQPKTLYVGNLSRDVTEALILELFGQIGPCKSCKMIVDTAGHDPYCFVEFYEHRHAT
ATIAAMNGRKILGKEVKVNWATTPTSQKKDTSSHFHVFVGDLSPEITTDDIKAAFAPFGK
ISDCRVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPAPKTT
NETTNAKQLSFDEVVNQSSPSNCTVYCGGVTTGLTEQTMRQTFSPFGQIMEIRVFPDKGY
SFVRFNSHEAAAHAIVSVNGTSIEGYVVKCYWGKETTDIVSPIQQVQMPQQNTVSFAAQP
YSQWGQWYSNTAAQQIGQYVPNGWQVPSYGVYGQTWDQQGYNHLHAAGAGWTGVGAVSNG
AMVEPGQGVNGAVLTNQAGMSTAGYHTH
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgaccagcccaaaaccctgtatgtggggaatctgtcccgggacgtgacagag
gccctcatcctggagctgtttggccagattggaccctgcaagagctgtaaaatgatagta
gatacagcaggtcatgatccgtactgctttgtggagttctatgagcatagacatgccacg
gccacaatcgcagccatgaacggtcggaaaattctgggtaaggaggtcaaggtcaactgg
gccacgacgccaaccagccaaaagaaagacacaagcagtcacttccatgtctttgttgga
gatctaagtcctgaaatcacaacagatgacattaaagcagcttttgctccatttgggaaa
atatcggattgtcgagtggtgaaagacatggccacaggtaaatctaaaggctatggcttt
gtctccttcttcaacaaatgggatgcagagaatgccatccagcagatgggaggacagtgg
ctgggaggacggcagatcaggaccaactgggccacaaggaagcctgctcctaaaactaca
aatgagaccaccaatgccaagcagctctcttttgacgaggtggtcaaccagtccagcccc
agcaactgcaccgtctactgcgggggggtcacaacaggactcacagagcaaaccatgaga
cagaccttctcaccttttggccaaataatggaaatccgtgttttcccagacaaaggctac
tcatttgtgaggttcaactcccatgaagcagcagctcatgccattgtctccgtcaacggc
acatccatagagggctatgttgttaagtgttattggggcaaagaaacaacagacattgtg
agccccattcagcaggtacagatgccccagcagaacacggtgagcttcgcagcgcagccc
tacagtcagtggggtcagtggtacagcaacacagctgcacagcagattgggcagtatgtg
cccaacggatggcaggtgcccagctacggagtttacgggcagacctgggatcagcagggc
tacaatcatttacatgctgccggtgccggatggacaggcgtgggcgcagtgagcaacggg
gccatggtggagcccgggcagggcgtcaacggggcggtgctgaccaaccaggccggcatg
agcaccgccggctaccacacccactga
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