Trematomus bernacchii (emerald rockcod): 117476554
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Entry
117476554 CDS
T09643
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117476554 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tben04990
]
117476554 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
tben04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117476554 (pdlim5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
PilX
Motif
Other DBs
NCBI-GeneID:
117476554
NCBI-ProteinID:
XP_033979075
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MSSSYSVSLAGPAPWGFRLQGGKDFCLPLTISRLNDGGKAAQANMTVGDIIMSINGISAD
RMNHLEAQNKIKACTGNLSLTLQRPSSAPQDGVTKEEPQEIIKPVPITHPTPTTAYTKPS
SQPGPAYNKTARPFGGDSSIVVTAPSPAAPSIPSPSSAFKPAAPSQPPQPPFLLKSSLPA
PDSAPANSVPRPSPVRSTFTSPSASSSSSNSSSPARVTAPPSHPNVPQPSVYNTPIHLYS
NTNACEVAVGQRRGLLESQGLSENFNGKVNVEPEDHASQLSDASRKRLMEDTEDWHPRTG
TSQSRSFRILAQLTGTENEQAPENGGKNEAVDKSTPAVHTSPAAKTFSKSAASPRNGNGV
PASTFKSPAAQNKPSFQPGGLPGFPKGGGAPSFGKVTNPTPKGPDRPIPQPHPQDLNSLV
QRAEHIPAGTRTPMCNQCNTVIRGPFLVAMGMSWHPEEFNCAHCRSSLAVGGFVEEKGQV
YCERCYEQFLAPTCGHCQQKILGEVMNALKQTWHVSCFVCAACQQPIRGNTFHMEDGQPY
CEKDYYNLFGSNCHGCDFPIEAGDKFLEALGSTWHDTCFVCAVCSASLEGQAFFSKKDKP
LCKKHAHTVNI
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagcgtctccctggctggccccgccccctggggcttcagactgcaa
ggagggaaggacttctgtctccccctcaccatctcacggcttaatgatggaggcaaggca
gctcaagccaacatgacggtcggagacatcatcatgtccattaacggcatttccgcggac
cgcatgaatcacctagaggcccagaacaagattaaggcctgcacgggcaatctcagcctc
actctgcagagacccagcagtgcccctcaagatggagtcactaaggaagagcctcaggaa
atcataaaacctgtcccaatcactcaccctaccccaaccacggcatacaccaagccctcc
agtcagcccggccctgcgtacaacaagaccgcccggccttttgggggcgacagcagcatt
gtggtcacagccccctccccggctgccccctccatcccctcaccatcatctgctttcaag
ccagctgctccttctcaaccgccacagcctccatttctgctgaagtccagcctgcctgcc
ccggactctgctccagccaattcggtccccaggcccagccctgttcgctccaccttcacc
tccccatctgcctcttcctcctcatctaactcctcctctccagccagagtgacagccccc
ccctcccatcctaatgtcccacagccctccgtctataacactccgatccacctctactcc
aataccaatgcatgtgaggtggctgttggacagagacgcggtcttttggagagccagggg
ctgtcagagaacttcaatgggaaggttaatgtggagcctgaggaccatgcgtcccagctg
agtgatgccagcaggaagcgtctgatggaggacacggaggactggcacccccgaaccggc
acctcccagtcccgctccttccgcatcctggcccagctcaccggcactgaaaatgagcaa
gctccagagaacggtggaaagaatgaggcagttgacaaaagcactcccgctgtgcacacc
tcgcctgcagccaaaacattttccaaatctgcagcctcacccaggaatggcaacggggtc
cctgcttccacgttcaagagcccagccgcccagaacaagccttccttccagcctggaggc
ctaccaggttttcctaagggtggaggagctccttcatttggcaaagttaccaaccctact
cccaaaggtccagaccgccccatccctcagccacacccacaggacctcaactctctggtg
cagcgggccgagcacatcccagccgggacacgcacccccatgtgcaaccaatgtaacact
gtcatcaggggcccattcctcgtggcaatgggcatgtcatggcacccggaggaattcaac
tgtgctcactgccgctcctctctggcagtgggggggtttgtggaggagaagggccaggtg
tactgcgaacgttgctacgagcagttcctcgctcccacctgtggccactgccaacagaag
atcctgggggaagtcatgaatgccctgaaacagacctggcacgtgtcctgtttcgtctgt
gccgcctgccaacagccaatcaggggcaacacatttcacatggaggacgggcagccatac
tgtgaaaaagactactataacctctttgggtcaaactgccacggatgtgacttccccatc
gaggcaggggacaagttcctggaggctctaggatccacctggcatgacacctgctttgtg
tgcgcggtctgctctgctagtctggaaggtcaggcgttcttctccaaaaaagacaagcct
ttgtgcaagaaacacgcccacacagtcaacatctga
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