Trematomus bernacchii (emerald rockcod): 117476708
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Entry
117476708 CDS
T09643
Symbol
notch1a
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117476708 (notch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF
hEGF
EGF_TEN
EGF_CA
Ank_2
Ank
NOD
EGF_2
Notch
NODP
Ank_4
Ank_5
Ank_3
EGF_3
EGF_DL_JAG
cEGF
Motif
Other DBs
NCBI-GeneID:
117476708
NCBI-ProteinID:
XP_033979306
LinkDB
All DBs
Position
Unknown
AA seq
2452 aa
AA seq
DB search
MYRFFVKLTFLIPAIVLTQGLKCSLPTESCLNGGRCEGSHNGNGECKCPSDYVGNRCQYP
SPCSPSPCRNGGECRAVLHGNGFDFRCVCRLGFTDELCLTPNNHACMSSPCRNGGTCDLI
TLTVFRCRCSPGWSGKTCQLSNPCASNPCANGGQCSAYDSTYICTCPPAFHGQTCKQDVN
ECAQSPSPCFNGGACVNEVGSYSCRCPLEYRGQHCETPYMPCSPSPCQNGGTCVQKGDTT
YDCSCLPGFNGPHCEHNIDDCPGHNCQNGGMCVDGVNTYNCQCPPHYTGQYCTENVDECE
LMPNACQNGGTCHDTHGSYHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNLDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCHNDATCLDQIGGFHCICMP
GYEGVFCHVNTDECGSQPCLNNGKCVDKINSFHCECAKGFSGSLCQVDIDECASTPCKNG
AKCTDGPNKYTCECAEGYTGQHCETDINECYSDPCHYGTCKDGLASFTCYCRPGYTGRLC
ETNINECLSQPCRNGGTCQDRENTYICACPQGTAGFHCEVNLDDCKSKPCDYGRCIDKIN
GYECACEPGYTGSMCNINIDECAINPCHNGGTCVDGTNSFTCLCPEGYNDATCLSQVDEC
GSNPCIHGHCQDLVNGYKCTCDSGWSGPNCDINNNECESNPCMNGGTCKDMTSGYHCTCR
AGFTGPNCQTNINECASNPCLNQGSCIDDVAGYKCNCLLPYTGDNCETLLAPCSPRPCKN
GGVCKESEDYQSFSCICPEGWQGQTCEIDINECVKSPCRNGAMCHNTMGGYQCMCQPGYT
GQKCETDTDDCKPNPCSNGGLCRDSINSFTCTCLPGFRGGRCEQDINECESNPCRNGANC
TDCVNSYTCTCRPGFSGINCEINTNDCTDSSCFNGGTCVDGINAFTCLCLPGFTSSYCQY
DINECDSKPCLNGGSCLDSYGTYKCTCPHGYTGINCQNLVRWCDSSPCKNGGTCWQQGAS
YTCQCQTGWTGLYCDIPSVSCEVAAKQQGVEVAHLCRNSGQCLDAGNTHYCRCQAGYTGS
YCQEQVDECSPNPCQNGAACTDYLGGYSCECLPGYHGVNCSKEINECQSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEMNLDDCTPSSDPLTNEPKCFNNGKCVDRIGGYQCVCPAGYV
GERCEGDVNECLSDPCDPQGSYNCVQLTNSYRCECRTGYTGQRCDKVFDGCKGRPCKNGG
SCAVASNTPHGFICKCPPGFTGSSCEYDSRSCGGLNCRNGGTCVSGHLGPRCLCPPTFTG
PECQTPTDSLCISNPCYNGGTCQTTPDAPFFKCSCPINFNGLLCHILDYSFVGGFGRDII
PPPEVEVSCEIPQCDEWAGNHICNSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYF
NDGKCDAQCNSPGCLYDGFDCQGQEGTCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CAENMPEKLADGHLVLVVHIPPEQLKNRSSTFLREISSVLHTNVVFRRDAKGEPMIFPYY
GNEQDLVKHNVLKRSADGWPEWAARPASVLGQVQESVSAMVSPRRRRELDPVQIKGSIVY
LEIDNRQCYQQSTECFQSATDVAAFLGALATSGNLNVPYIEAVTSVRPAPSGSELYPMYV
VFLGLAALGFVCLGVLVSRKRRREHGQLWFPEGFKASEPTKKKRREPLGEDSVGLRPMKN
SDINLMDDNQNEWDDEDPECRRFRLEEQAMLDLRDRTDHRKWTQQHLDAADLRTASIAPT
PPQGEMENDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDPSAEIISDFIYQGANL
HNQTDRTGETALHLAARYARSDAAKRLLESSADANVQDNMGRTPLHAAVAADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADANATDDSGKSALHWAAAVNN
VEAAMVLLKNGANKDMQDNKEETPTFLAAREGSFETAKVLLEHFANREITDHLDQLPRDI
AQERMHHDIVRLLDEYNVVRSPGLHSGPLSTSSLSPPLCSPNDYLSNLKPNLSVKKVRKV
SAGKGGKDGGKDNRMKKKKSLDGKGNLLDSTGVLSPVDSLESPHGYLSDVASPPMTSPFQ
QSPPMSLNHLQGNGDHMGQMMGKDMSCMSFDPPRLSHMPVSSPNSQGRGGGQCDWISRMH
PGVGQQGGYSQPISHNMMGALHGVSTATLSQIMGYQNMQTSHLVMQQQQHSRQLQHQNSS
STTGGLNQSFPSVDLNDGRSMPILTVMPQETQILGTQFLTPPSQHSYSGPMDHTPNHQLQ
VPDHPFLTPSPGSPDQWSSSSPHSNMSDWSEGISSPPTSIHSQMNLIPDQFK
NT seq
7359 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgaaactaacatttctgattcctgcaatcgtcctcacacaaggt
ctaaaatgctcccttcccactgaatcatgcctgaatggaggacggtgtgaaggcagccat
aatggaaatggagagtgcaagtgtcccagtgactacgtgggtaaccgctgccagtacccg
agcccctgcagcccctccccctgcaggaacggaggggaatgtcgcgcagtgttacatggc
aacgggtttgatttccgctgcgtgtgccgcctgggtttcaccgatgaactgtgcctgacc
cccaacaaccacgcctgcatgagctccccctgccgcaacggggggacatgtgacctcatc
accctcaccgtgttccgctgcaggtgctcccctggatggtcaggtaaaacctgccagctc
tctaacccctgtgcgtccaacccatgtgcaaacgggggccagtgctcggcctacgactcc
acctacatctgcacctgcccccccgccttccacggtcaaacctgcaagcaagacgtgaac
gagtgcgcccagagcccctccccctgtttcaacggcggggcgtgtgtcaacgaagtgggc
tcgtacagttgccgctgtcctctcgagtacaggggccaacactgtgagaccccctacatg
ccctgcagcccctccccctgccagaatggaggcacctgcgtgcagaagggagacaccacc
tacgattgtagctgccttccaggcttcaatggtccgcactgtgagcataacatcgacgac
tgtccgggccacaactgccagaatggcggcatgtgtgtggacggtgtgaacacctacaac
tgccagtgccctcctcattacacaggtcaatactgcacagaaaacgtggatgagtgtgag
ttgatgcccaacgcttgccagaatggagggacgtgccacgacactcacggcagctaccac
tgcgtctgcgtcaacggctggacgggcgacgactgcagcgaaaacatcgacgactgtgcc
agcgccgcctgttaccatggcgccacctgccacgatcgtgtggcctccttcttctgcgag
tgtcctcatggtcgcacaggtttgctgtgccacctcgatgacgcctgcatcagcaacccg
tgtcagaaaggctccaactgtgacaccaaccccgtcaatggcaaggccatctgcacctgc
ccccccgggtacaccggctccgcctgcaacctggacatcgacgagtgctccctcggtgcc
aacccctgtgagcatggcgggcgctgcctcaacaccaaaggttcgttccagtgcaagtgt
ctccagggatatgagggccctcgctgtgagatggacgtcaatgagtgcatgtctaacccc
tgccacaacgatgccacctgcctggaccagatcggaggcttccactgcatctgcatgcca
ggatacgagggtgtgttctgccacgtcaacacagatgagtgtgggagccaaccttgtctc
aacaacggcaagtgtgtggacaagatcaactccttccactgcgagtgcgccaaaggtttt
tcagggagtctttgtcaggtggacattgacgagtgtgccagcaccccctgcaagaacgga
gctaaatgtactgatggtcccaacaagtacacctgcgaatgtgctgaaggttacacaggg
cagcactgtgagacggacatcaacgagtgttactcggacccctgccactacggcacctgt
aaggacggcctggcctccttcacctgctactgccgcccgggctacaccggccgcctgtgt
gagaccaacatcaacgagtgtctgagccagccctgcaggaacggaggcacctgccaggac
cgggagaacacgtatatctgcgcctgtccccaaggaaccgcaggtttccactgtgaggtg
aacttggacgactgtaagagcaaaccctgcgactacggccgctgcatcgacaaaatcaac
ggctacgagtgtgcatgcgagccgggctacacaggatcaatgtgcaacatcaacatcgat
gagtgtgccattaacccgtgtcacaacgggggcacgtgtgtggacggcaccaacagcttc
acctgcctgtgtccggagggctacaacgacgccacctgcctgtcccaggtggacgagtgt
ggcagcaacccctgcatccatggacactgccaggacctcgtcaacggctacaaatgtacc
tgtgactctggctggagcgggcccaactgtgacatcaacaacaacgagtgtgagtccaac
ccgtgcatgaacggggggacctgcaaggacatgaccagcgggtaccactgcacctgcagg
gcgggcttcactggacctaactgccagactaacatcaacgagtgtgcctccaacccctgc
ctgaaccagggctcctgcatcgacgacgtggccggatataagtgcaactgtctgctgccc
tacaccggtgataactgtgagaccctgctggcgccctgcagccccagaccctgtaaaaac
gggggtgtttgtaaagagtctgaagattaccaaagcttctcctgcatctgccccgaagga
tggcaaggtcaaacatgtgagatagatatcaacgaatgcgtgaagagcccgtgccgcaac
ggtgctatgtgccataacaccatggggggctaccagtgcatgtgccagccaggttacacc
ggccagaagtgtgagaccgacactgacgactgcaaaccaaacccctgcagtaacggaggt
ctgtgccgcgacagtatcaactctttcacctgcacctgtctgcccgggtttcgtggcggc
cgatgtgagcaggacataaacgagtgtgagagtaacccctgtaggaatggggcaaactgc
actgattgtgtgaacagctacacctgcacctgccggccgggcttcagcggcatcaactgt
gagatcaacaccaacgactgcaccgacagctcctgctttaacgggggcacctgtgtggac
ggcatcaatgcgttcacctgcctgtgtctgcctgggttcaccagcagctactgccagtat
gacatcaacgagtgtgactccaagccgtgcctcaacggggggtcctgcctggacagttac
ggcacatacaagtgcacctgtcctcatggctacacaggaatcaactgtcagaatctggtg
cgctggtgtgattcgtccccctgtaaaaacggaggaacatgctggcagcagggggcctcg
tacacctgccagtgtcagactgggtggaccggtctctactgtgacattcccagtgtgtcc
tgtgaggtcgcagccaaacagcaaggggtggaggttgctcacctgtgcaggaactcaggc
cagtgtctggatgctggaaacactcactactgccgctgccaggccgggtacaccgggagc
tactgccaggagcaggtggacgagtgctcccccaacccctgccagaacggagcggcatgc
accgattacctgggaggctacagctgcgagtgtctacctggatatcatggtgtaaactgc
tccaaagagatcaatgagtgtcagtcgcagccctgtcagaacggaggcacgtgcatcgac
ctgatcaacacgtacaagtgctcctgcccccgaggaacacaaggcgtgcactgtgagatg
aatctggatgactgcaccccctccagcgaccccctgaccaacgagccaaagtgcttcaac
aacgggaagtgtgtggaccgcatcggaggctatcagtgtgtgtgtccagcgggatatgta
ggagagcgctgcgaaggcgacgtcaacgagtgtctgtcggacccctgcgacccccagggc
tcctacaactgtgtccagctcaccaacagctaccgctgcgagtgccgcacgggatacaca
ggtcagcgctgtgacaaagtgttcgacggctgtaaaggaagaccctgcaaaaatggaggg
tcttgtgctgttgccagtaacacacctcacggcttcatctgcaaatgtcctcctggcttc
accggctcttcctgtgagtacgactctcgctcctgcgggggtctgaattgcagaaatggc
ggtacctgtgtgtcgggccacctgggcccccgctgcctctgcccccccaccttcactggg
cccgagtgccagacccccaccgacagtctctgcatctccaacccctgctacaacggtggc
acgtgccagaccacccctgacgcgcccttcttcaagtgcagctgcccgattaacttcaac
ggcctgctgtgccacatcctggactactccttcgtggggggcttcggccgggacatcatc
cccccgccggaggtggaggtgagctgcgagattcctcagtgtgacgagtgggccgggaac
cacatctgcaactctctgtgcaacaaccacgcctgcggctgggacgggggggactgctcg
ctgaacttcgacgacccgtggcagaactgttcggccgcgctgcagtgctggcgctacttt
aacgatgggaagtgtgacgctcagtgcaacagcccggggtgtctgtacgacggcttcgac
tgccaggggcaggaggggacctgcaacccgctgtatgaccagtactgtaaggaccactat
gctgacggtcactgtgaccagggctgcaacaacgctgagtgtgagtgggacgggctggac
tgtgcagagaacatgccggagaagctggcagacgggcacctggtcctggtggtccacatc
ccccccgagcagctgaagaaccgctcctcaacgttcctcagagagatcagcagcgtgctc
cacaccaacgtggtgttccgtcgtgacgccaaaggagaacccatgatcttcccgtactac
ggaaacgagcaggacctggtgaaacacaacgtgctgaagcgctccgcagacggctggccg
gagtgggccgccaggcccgcctccgtcctgggtcaggtccaggagagcgtgtccgccatg
gtcagcccccgcagacgcagagagctggaccctgttcagatcaaagggtcgattgtgtac
ctggagattgataaccgtcagtgttaccagcagtccactgaatgcttccagagcgccaca
gatgtagcggcgttcctcggagcgctggccaccagcgggaacctgaacgtcccctacatc
gaggctgtcaccagtgtgagacctgccccctccggctcagagctctaccccatgtacgtg
gtcttcctgggcctggccgctctgggtttcgtgtgcctcggtgttctggtgtcccgtaag
aggcgacgcgagcacggccagctctggttccctgaaggattcaaagcttcagagcccacc
aaaaagaagcgcagagagcctctgggagaggactctgttgggttgaggcctatgaaaaac
tctgacatcaatcttatggatgacaatcaaaacgaatgggatgatgaggatccagaatgc
aggcgcttcaggttggaggagcaggccatgttggacctgcgtgaccgtacagaccacagg
aagtggacacagcagcatctcgatgcagctgacctgcgcactgcctccatagcaccgact
cctcctcagggagagatggaaaacgactgcatggatgtgaacgtcagaggaccagatggt
ttcaccccccttatgatcgcctcctgcagcggtggagggctggagacgggcaacagcgaa
gaggaagaggatccctcggcggaaatcatctccgactttatttaccaaggcgccaacctc
cacaaccagacggatcgcaccggggagacggccctccacctggccgctcgctacgcccgc
tccgatgctgccaaacgcctcctggagtccagcgccgacgctaacgtccaggacaacatg
ggacgcaccccgctgcacgctgctgtggctgcggacgctcagggagtcttccagatttta
atccgaaaccgcgccactgatcttgacgcccgcatgcacgacggaacaacaccgctgatc
ctcgccgcgcgattggctgtggaggggatggtggaggagcttatcaactgccacgccgac
gctaacgccaccgacgactctggaaagtctgctctgcactgggccgcggcggtgaacaac
gtggaggccgccatggtgctgctgaagaacggagccaacaaagacatgcaggacaacaag
gaggagacgcctaccttccttgccgcccgtgaaggaagcttcgagacagctaaagttctc
ctggaacattttgccaaccgcgagatcacggaccacctggaccagctgccccgagacatc
gcccaggagcgcatgcaccacgacatcgtgcgcctgctggatgagtacaacgtggtccgg
agccccgggctccacagcgggcccctgagcacctccagcctctccccccccctctgctcc
cccaatgactatctcagcaacctcaaacccaacctctctgtaaagaaggtccgtaaagtg
agtgccgggaaaggaggaaaagatggaggtaaagataacaggatgaagaagaagaagtcg
ctggatggaaaggggaatctgctcgattcgacaggcgtcctctccccagtcgattctctc
gagtctcctcacggatacctctccgacgtagcttctcctcccatgacatcccccttccag
cagtcgcctcccatgtctctaaatcacctccaaggcaatggggatcacatgggccagatg
atgggtaaagatatgagctgcatgtctttcgaccccccacgtctctcccacatgcccgtc
tccagccccaacagtcagggcagagggggaggtcagtgcgactggatctcaaggatgcac
ccgggtgtgggccagcaggggggctacagccagcccatctcccacaacatgatgggggct
ctgcacggggtcagcacggccacgctgtctcagatcatgggctaccagaacatgcagacc
agccacctggtgatgcagcagcagcagcactcgcggcagctccagcaccagaactccagc
tccaccacgggggggctcaaccagagcttccccagcgtggatctgaacgacgggcgctcc
atgcccatcctcaccgtcatgccgcaggagacccagatcctcggcactcagttcctcacc
cccccctcccaacacagctactctggccccatggaccacacccccaaccaccagctacag
gtgcccgatcaccccttcctcaccccttcccccggctcccccgaccaatggtctagctcg
tccccacattccaacatgtctgattggtcggaaggcatctcgagcccacccacgagtatc
cattcgcagatgaacctgatcccggaccagtttaagtag
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integrated database retrieval system
