Trematomus bernacchii (emerald rockcod): 117476754
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Entry
117476754 CDS
T09643
Symbol
nup188
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117476754 (nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117476754 (nup188)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117476754 (nup188)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup192
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
117476754
NCBI-ProteinID:
XP_033979370
LinkDB
All DBs
Position
Unknown
AA seq
1746 aa
AA seq
DB search
MAESEMSVRSSRELHTILLGRSALREPAQIEAELDRHWERLHQGLCYYKPPSSSSAGKVK
EDKDVAQPLKDFGLRISKLLCLDEHQSVQLLQCYLQEDYRGTRDSLKVVFKDERQSQSLL
LKVADYYYEERMCLLRCVLLLLTYFQDERHPYRAEYSNCVNKLEKDLVSKYKSQFENLFK
AEAPTWETHGNLMTERQVSHWFLQCLREQSLLLEIIFLYYAYFEMSPSDLLSFTKMFKEQ
GFGLRQTNRHLVDKSMDALVDRIGYFSSLILVEGMDIDFLHKCALEECTEQHQFSSAADV
IKGMDQLLLTFGDIPHHGPVLLAWVLLRHTLRPEESSPVIRRIGNTALQLEVFKYISTML
KGLGVSGNNVTAITAKMCIYGLLSFVVTSFEEESLQTGGQAAQCSHLIDAACEVLSAPNL
AEVFWEMKPNMGLGMILDSAVGMFPHKIGPLLQLLTALLSNKSTVKKVYNFLDKMSYYTQ
VYKHKPNDVISKDDETLWRRQTPKLLYPLGTGQTNLWMPQGVLGQVMIGGEQGYVVRWDH
SYSSWTLFTCEVEMLLHVVSTADVIAHCVRVKPVLDLVHKIISTDWTVSDCLLPLTSRIY
MLLQRLTSVINPPVDVIASCVNCLSVLAARMPGKVWSSLHHTGFLPFASNPLTNMAQCVS
AEGMKAGNYGNLLVQIEQPKGEYAVTIAFLRLITTLVKGQLGSTQNKGLIPCVLLVLKEM
LPTYHKWRYNTYGVRERIGCLILELIHAILNLSPEGEDQASTPTLQSLCIYSLANTEAGQ
AVVNIMGVGVDTIDVVLAAQPSRSSPRVPGQILIQTVKLAFSVTNNVIRLKPPSDVVSPL
EQALTQHGGHGNNLIVVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAVAI
RDAFLTRLQSKTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGTEGSKEFLLGEWS
CLHVVLDLIDSKQQGKYWCPPMLHKAALAFLLALWQDRRDSAISVLRTKERFWENLTTPL
FATLTPPSDTTEACVLETCAFVMKIIGLEIYYVVSGSLEQSLKDGLQKFSNARRYEYWSQ
YVKSLVCHVAEMEEEGVGSLTETQMLISAWRMLLILSTSHSDVMQLTEDSTKLKLFMDVL
DGTKAALTIPMSVPCLRLGSMMATLLLILLKQWRSVVATAPDILSPLSLILESVLQADHH
MMERTKAKIFSALISVLQIQGLNGGDISQLPQLLLCVCETVKDEALALIDSTRHMSQVGE
GVEDEDSMETDSFRSPQKDQRDGVCVLALHLAKELCRSDEDGEHWVSVMRKVPVLPSVLS
AVEISLRSKHNLYFSEAALHLLLTLARTPQGAAAVAGAGIIQTICLPLLSVYEGSSNGAS
QSFSRKSQDSACWPGSTRLCMSLMESLLKTLRYNFINEALDFVGVHQERILQCLNAVRTV
QSLACLDEADHTVGFLLQLSSFCKEWQFHLPKLLWDVQVNLCYLCQTCTYLLHSKKMLHH
YLQAKNGEALPPGPLPRTQRAPQTPSKEAAGGGEREEAEQKALLAVQCSLLKILSKTLAT
LQHFTPDCCQILLDQSMDLAEYRTLFVLSFTTPAFDPDVAPSFGTLLATINVGLSMLGEI
EKKKEPVSQSIASLASSEEIQALKSLLMFTMENCFYVLISQAVRCLKDPSTPPRDKQRLK
QELSSELSTLLSSLSRHFRRGSPSSPASGMLPSTQNKPPTPGSKASHEGQEPFIQLVQAF
VRLVQR
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatccgagatgagcgtcaggagcagtcgagaattacataccatattgctggga
agatctgcattgcgagagccggctcagatagaggcagagctcgacagacactgggagaga
ctgcatcaaggtctatgttattacaagccacccagctcgtcctctgctgggaaagtgaag
gaggacaaagatgttgcacaaccattgaaggattttggtctgaggatcagtaaactattg
tgtcttgatgagcaccagagtgtgcagcttttacagtgctacctacaggaggactacaga
ggaactcgtgattcgttaaaggttgttttcaaagatgagcgacaaagccagtcactgctg
cttaaggtggctgactattattacgaggagcgcatgtgtctgctcagatgtgtcctacta
ttgctgacatactttcaggatgagcgacatccctacagagctgagtacagtaactgtgtg
aataaattggagaaggacctggtgagcaagtataagtcacagtttgaaaacctcttcaaa
gcagaagcaccaacatgggaaactcacggaaacctcatgacggagaggcaggtgtcccac
tggttcctgcagtgtctgagggaacagtctcttctgctggagatcatcttcctttactac
gcatactttgagatgagcccgtctgacttgctgagcttcaccaaaatgttcaaagagcaa
ggcttcggtttgaggcagaccaacagacatcttgtagataaaagcatggacgccctggtc
gaccgcattggatattttagctccctaatcctggtggaaggaatggacatagactttctg
cacaagtgtgccctggaggagtgcacagagcagcatcagttctccagcgctgcagacgtc
atcaaggggatggatcagctgctgttgacgttcggagacatccctcaccacgggccggta
ctgctggcctgggttctgctgagacacacactgcgaccggaggagtccagccccgtcatc
aggaggatcggaaacactgccctgcagctcgaggtgttcaagtacatctcaaccatgctg
aagggcctcggcgtgtcaggaaataatgtcacagcaatcacagcaaagatgtgtatctac
ggtctcctctcgtttgtggtcacttcttttgaggaggaaagcctacagactggtggtcag
gcggctcagtgctcccacctcatcgatgctgcctgtgaagtgctctctgctccaaatctg
gcagaagtgttttgggaaatgaaacccaacatgggactgggaatgattctggacagtgca
gtcgggatgttccctcacaaaattggacctctgttacagcttctaactgcacttctgtca
aacaagtccactgtgaaaaaggtgtacaactttttggataagatgtcctactacacacaa
gtttacaaacataaaccaaatgacgtaatctcgaaggatgatgagacgctgtggagaaga
caaacaccgaaactgctctacccactcggcacagggcagactaacctgtggatgccgcag
ggggttctgggtcaggtgatgatcgggggggagcagggctacgtggtgcgctgggatcac
tcctacagctcctggactctcttcacctgcgaggtggagatgctgctccatgttgtttca
actgcagatgtgatcgcccactgtgtgcgtgtgaaacctgtcctggatctggtgcataag
atcatcagcacagactggaccgtgtccgactgtctgctgcctctcacctcacgcatctac
atgctgctgcagaggttaacatcagtcatcaaccctccagtggatgtgatcgcctcatgt
gtgaactgcctctctgtactggctgcaaggatgcctgggaaggtgtggtccagtctgcac
cacacaggtttcctcccctttgcctccaaccctctgaccaacatggctcagtgtgtaagt
gctgaagggatgaaggcaggaaactacggcaacctgctggtccagattgagcagccgaag
ggggagtatgctgtgaccatcgccttcctgcgtctcatcacaactctggtcaagggtcag
ctgggcagcactcagaacaaaggtctgatcccctgtgtgctgctggtgctgaaggagatg
ctgcccacctaccacaagtggcgttacaacacctacggggtcagagagaggataggatgt
cttattttggagctgatccatgccattctcaatctgagtccagagggagaggatcaggcc
agcacccccaccctgcagtctctgtgtatctacagcctggccaacactgaggctggacag
gcggtcgtcaacatcatgggagtcggagtggacaccatcgatgtggtgctggctgctcag
cccagcagatcctctccgagggtccctgggcaaatcctgatccagacggtcaagctggcc
ttctccgtcaccaacaacgtgatccgcctgaagcctccgtctgacgtggtgtctcctctg
gagcaggcgctgacgcagcacggaggccacggcaacaacctcatcgtggtgttggccaag
tatatttaccacaaacacgacccagcgctgccccgcctcgccatccagctgctcaagagg
ctcgccacggtggctcccatgtcagtgtacgcttgcctgggcaacgatgcagtagctatc
cgggacgccttcctcactcggctgcagagcaagacagaagacatgaggatcaaggtgatg
atcctggagttcctcacggtggcggtggaaacgcagcccggcctcatcgagcttttcctc
aacctggaagtcaaagatgggacggaggggtcaaaggagtttctgcttggtgagtggagc
tgcctccatgtggtgttggatctgatcgactccaaacagcaggggaagtattggtgcccc
cccatgctccacaaagcagcgctggccttcctgctcgccctctggcaggaccgcagagat
agtgccatctctgtcctgcgcactaaagagaggttttgggaaaatttgacaacgcctctc
tttgcaaccctcacccctccttcagataccaccgaggcgtgtgtcctggagacgtgtgct
tttgtcatgaagatcatcggcctggagatctactacgttgtcagtgggtctctggagcag
tctctgaaggatgggctccagaagttttccaacgctcggcgatacgagtactggtcccag
tatgtgaagtctctggtgtgccacgtggcagagatggaggaggagggggtcggctccctc
acagagacccagatgctgatctctgcctggaggatgctgctgattctttccacctcccat
tccgatgtgatgcagctgacggaggactcgaccaaactgaagcttttcatggacgtcctg
gacgggaccaaagctgctctgaccatcccgatgtctgtgccttgtcttcgtctcgggtcc
atgatggccactctgctgctcatcctcctcaaacagtggagaagtgtggttgccacagct
ccggacatcctgtctccgctctccctgatcctggagagcgtcctgcaggccgaccaccac
atgatggagagaaccaaagccaagatcttctcggcgctcatctctgtgctgcagattcag
ggactcaacggtggagatatttcccagctgccccagctgctgctgtgtgtatgtgagact
gtaaaagacgaggcgctggcgctcatcgacagcacccggcacatgagccaggtgggggag
ggggtggaggacgaggacagcatggagacggactctttccgcagcccgcagaaggaccag
agagacggggtgtgtgtgttagcgctgcacctagcgaaggagctgtgtcgcagcgatgaa
gacggtgagcactgggtctctgtgatgaggaaggttcccgtcctcccctctgtgctcagc
gctgtggagatcagcctgagatccaaacacaacctgtacttcagcgaggcggcccttcac
ctgctgctcactctggcgcgcactcctcagggggcagcagctgtggctggagcagggatc
atccagaccatctgcctccccctcctcagcgtctacgagggctcttcaaacggagcatca
cagagtttctccaggaagtcgcaggactcggcctgctggccggggtctacccgcctctgc
atgtctctgatggagagtctgctcaagacgctgcgctacaacttcatcaacgaagccctg
gacttcgtaggagttcatcaagagcgcattctacagtgtctgaacgcagtgcgcaccgtg
cagagcctggcctgtctggacgaggccgatcacacggtgggcttcctgctgcagctctcc
agcttctgcaaggagtggcagttccatctgcccaaactgctgtgggacgttcaggtgaac
ctgtgctatctgtgccagacctgcacctacctgctgcacagcaagaagatgctccaccac
tacctccaggccaaaaatggcgaagcgttgccccctggtcccctccccaggacacagcgg
gccccccagaccccgtctaaagaggcggccggtggaggagagagagaggaggcggagcag
aaggccctgctggcggtgcagtgcagtctgctgaagatcctcagcaaaacgctggccact
ctgcagcacttcactccagactgctgccagatactgctggaccagagcatggacctggca
gagtatcggaccctgttcgtgctcagcttcaccacgccagcgttcgaccccgatgtggcc
ccttcgtttgggaccctgctggccaccatcaacgtgggcctgagcatgttgggagagata
gagaagaagaaagagccagtttctcagagcatcgcctccctggcctcatctgaggagatc
caagctctgaagtcgttgctgatgttcaccatggagaactgtttctacgtgctgatctct
caggctgtgcgctgcctcaaagacccctccacccccccccgggacaaacagaggctcaaa
caggagctcagctcggaactgagcactcttctttcaagtctttcccgccatttccgcagg
ggctctccgtcgtctccagccagtggcatgctcccctccacccagaacaagccccccacc
ccaggctctaaagccagccacgagggccaggagcccttcatccagctggtgcaggccttc
gtaagactcgtgcagagatag
DBGET
integrated database retrieval system
