Trematomus bernacchii (emerald rockcod): 117476980
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Entry
117476980 CDS
T09643
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117476980
03041 Spliceosome [BR:
tben03041
]
117476980
03036 Chromosome and associated proteins [BR:
tben03036
]
117476980
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117476980
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117476980
mRNA cycle factors
Common to processing body (P body) and stress granule
117476980
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117476980
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117476980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
117476980
NCBI-ProteinID:
XP_033979558
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAGLDLNNVDGGEGGGTGRRYIPPHLRNSGAPRNAGNGYSAGIQY
GYSVAPVNLYSPGWDGGRSNGYVNGYHDNRSNGGYGGRGAPRDDRGVGSEGNFAAPRDAA
YNSFGGRNNDRSKSTFFNDRGSSSRGSYNRGGYSSGGGGGGNRWSDESRDEDWSKLTAPN
ERLENELFGASNTGINFEKYDDIPVEATGSNCPPHIDTFHDVDMGEIIMANIAMSRYDHP
TPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALAASKNGGQDSGR
YGRRKQYPLAMILAPTRELASQIYDEARKFAYRSRVRCCVVYGGADIGQQIRELERGCHL
VVATPGRLVDMLERGKIGLDYCSFLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTM
MFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATV
IPTDENVPEVPEKPGKESLTLVFVETKKGADALEDFLYHEGYSCTSIHGDRSQRDREEAL
AQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF
FNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQHKSTTRGRSKRFSGGFGARDYRQTP
GGGPSSFTTPRGGRSAGGGRGFGGGGGGFGGGGGGGFYGGGGGGNDGGYGGSYSNSGSGT
DWWGN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagctggctggcctagac
ttgaacaacgttgacggcggagaaggcggaggaactggcaggcgttacattccacctcac
ctgagaaactctggcgcacctagaaatgcaggaaatggttattccgctggtatacagtac
ggttattcagtggcaccagtaaacctctattcacctggatgggacggtggccgcagcaat
ggatatgtgaatggttatcacgacaaccgctctaatgggggctatggaggacgaggagcc
cctcgcgatgatagaggtgtaggcagtgaaggaaactttgcagctcctcgtgatgccgcc
tacaacagctttggcggacgcaacaacgataggtcaaagtccaccttcttcaacgaccgt
gggtcaagctcaaggggaagttataatcgcgggggttactccagcggcggcggaggagga
ggaaaccgctggtcggacgaatccagagacgaagattggtccaagctcaccgctcccaac
gagcgcctggaaaatgagctgttcggtgcaagcaacactggtataaactttgagaagtat
gacgatattcccgtggaggctacaggaagcaactgcccgcctcacatcgacaccttccac
gatgttgacatgggtgagattatcatggcaaacatcgccatgagtcgttacgatcacccc
accccggtccagaagcacgccatccccatcatcaagtccaagagagacctgatggcctgc
gcacagactggctctggtaaaacggctgccttcctgctgccggtgctgagccagatctac
agcgaaggacccggagaagctctcgcagcatcgaagaacggaggacaggatagtggaagg
tatggccgccgtaagcagtaccccctcgccatgatcctggctcccaccagagagctggcc
tcacagatctacgacgaggcgaggaagtttgcctaccgctcacgtgtgcgctgctgcgtt
gtgtacggaggcgctgacatcggacagcagatcagagagctggagcgcggctgccatctg
gtggtggcgacacccggacgcctcgtggacatgttggagcgcggaaagatcggactggac
tattgcagcttcctggtcctggacgaggctgatcgtatgttggacatgggtttcgagccc
cagatcagacgcatcgtggagcaggataccatgccgcctaaaggcatccgacagaccatg
atgttcagcgccaccttccccaaggagatccagatccttgctcgtgacttcctggaggat
tacatcttcctggcagtgggccgtgtcggctccacttcagaaaacatcacccagaaggtg
gtgtgggtcgaggagaacgacaagaggtccttcctgctcgacttgctcaatgctacagtt
attcccactgatgaaaatgtgccagaggttccagagaaaccgggtaaagagtctctgacg
ctggtgttcgtggagaccaagaagggcgcggacgccctggaggacttcctgtaccacgag
ggctactcctgcaccagtatccatggagaccgatcccagcgagacagagaggaggcgctg
gcccagttcagatccggacgctgccccatcctcgtggccacagctgtggctgccagaggt
ctggacatcagcaacgtgaagcacgtgatcaacttcgatctgcccagcgacatcgaggaa
tacgttcaccgtatcggccgtacgggacgtgtgggaaacctgggtctggccacgtcgttc
tttaacgacaaaaacagcaacataaccaaagacttgctggacatcttagtggaggcgaag
caggaagttccctcctggctggagagcctggcctacgagcaccagcacaagagcacgacc
cgagggcgctccaagaggttctccggtggtttcggagccagagattaccgtcagacgccc
ggaggcggaccctccagcttcactacgccccgtggaggtcgcagcgctggaggaggccgt
ggatttggaggaggcggaggtggattcggtggtggcggcggaggaggcttctacggcgga
ggaggaggaggaaacgacggcggttacggaggaagctacagcaactctggcagcggcacg
gattggtgggggaactag
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