Trematomus bernacchii (emerald rockcod): 117477006
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Entry
117477006 CDS
T09643
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117477006 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117477006 (supt5h)
03019 Messenger RNA biogenesis [BR:
tben03019
]
117477006 (supt5h)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117477006 (supt5h)
RNA polymerase I system
117477006 (supt5h)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
117477006 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Arabino_trans_N
DUF6406
Motif
Other DBs
NCBI-GeneID:
117477006
NCBI-ProteinID:
XP_033979595
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSENASGSSDGEAEEAEGIEETNSPVGSDKVAEEEGEDLLEEEDEYDEEEEE
DDDERPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKAEEAEVSNIDHVVLDED
NSGSRRLQNLWRDSREEALGEYYTRKYAKTSRGEHFPGGSEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFVAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKAA
IEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDF
MIFEANRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVMTVKHQSVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTV
GGFAPMSPRITSPMHHGGGSSPQRGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHSGQTSTHGRTPMYGSQTPMYGT
GSRTPMYGSQTPVQEAGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNDEEYDFG
YDDEPSPSPQGYTGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQ
GSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS
PGGYNPHTPGSNIEQGGSDWVTPDILVKIKDSFMDLMGQSGVIRSVTGGMCSVFMQESEK
VVSISSDHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GRLEH
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctccgaaaacgcgagtggcagcagcgacggagag
gcggaggaggcggaggggattgaggagacgaacagccctgtgggcagcgacaaggtagca
gaggaggagggggaagacctgctggaggaggaggatgaatacgatgaagaggaggaggaa
gacgatgacgagcgcccgaggaagaagccgaggcacggaggcttcattctagacgaagcc
gatgtggacgatgagtatgaggatgaggaggatcagtgggaggaaggagcggaagatatt
ctggagaaagcagaggaagctgaagtgtctaacatcgaccatgtggttctggacgaggat
aactccggatccagaaggctgcagaatctctggagagactccagagaagaggcgctgggt
gaatactacacgaggaaatacgccaagacttctagaggagagcatttccctggagggtcg
gaggagctttctgatgacatcacacagcagcagctacttcctggagtcaaggatcccaat
ctgtggacggtcaagtgtaagattggagaggagagggcgacggccatcgctctgatgagg
aagttcgtcgcctaccagttcaccgacacgccgctgcagataaagtcggtggtggccccg
gatcacgtgaaaggctacatctacgtggagtcgtacaaacagacgcacgtgaaggcggcc
atcgagggcatcgggaacctgaggatgggtctgtggaaccagcagatggtgccgatcaaa
gagatgaccgacgtgctgaaggtcgtcaaggaggtcaccaacctcaagcccaagtcctgg
gtgcggctcaagagaggcctgtacaaggacgacatcgctcaggtggactacgtggagccg
agtcagaacaccatctctctgaagatgattccccgcatagacctggaccgcatcaaggcc
aagatgagcctgaaagactggttcgctaagaggaagaagttcaagagacccgctcagagg
ctgtttgatgctgagaagatcaggtccctcgggggggaggtcagccacgatggagacttc
atgatcttcgaggcgaatcgttacagccggaaaggatttctgttcaagagcttcgccatg
tctgctgtgatcacagacggagtgaaacccactctctctgagctggagaagtttgaggat
caacctgaaggcatcgacctggaggtggtcactgagtcaggtaaggagcgtgaacacaac
ctgcaggctggagacaacgtggaggtgtgtgagggagagctgatcaacctgcagggaaaa
atcctcagtgtggacggaaacaagatcaccatcatgcccaaacacgaagacctgaaggac
cccctggagttcccggctcacgagttgaggaaatatttccgtatgggcgaccacgtgaag
gtgatcgcgggtcgatacgagggcgacaccggcctcatcgtcagggtggaggagaacttc
gtcatcctcttctctgacctcaccatgcacgagttgaaggtgttacccagagacctgcag
ctctgctcggagacggcttccggggtggatgcgggggggcagcacgagtggggggagctg
gtgcagctcgaccctcagacggtcggggtcatcgtccgtctggagagggagacgttccag
gtgctgaacatgcacgggaaggtgatgacggtgaagcatcagtcggtgaaccgcaggaag
gacaaccgcttcgccgtggctctggactcggagcagaacaacatccacgtcaaggacatc
gtcaaggtcatcgacggcccacactcgggtcgcgagggggagatccgtcatctgttcaga
ggattcgccttcctccactgtaagaagctggtggagaacgggggcatgttcgtctgcaag
acccgacacctggtgctggccggagggtcaaagcccagagacgtgaccaacttcacagtg
ggaggattcgctcccatgagtcctcgcatcaccagccccatgcaccacggaggaggaagc
tctccacagagaggaggaggaggaggaggaggaggaggaatggggcggggccgaggacga
agagacaacgatctgattggtcaaaccgtccgcatctcgcagggtccttacaaaggatac
attggggtggtgaaggacgccacagagtctacggcgcgcgttgagctgcactcgacctgt
cagaccatctcagtggatcgacagcgcctcaccaccatgggggctaagaggcacagcggg
cagacctcgactcacggccgcaccccgatgtacggatcccagactccgatgtacgggacg
ggatccagaacgcccatgtacggctctcagacgcccgtacaagaagctggaagccgcacg
cctcactacggctctcaaaccccattgcatgatgggagcaggacgccgggtcagagcgga
gcctgggaccccagcaaccccaacacaccctccaggaatgacgaggagtatgactttggg
tacgacgatgaaccgtccccctcccctcagggttacaccgggacccccaacccccagacc
cccggttacccagaggtcccctctcctcaggttaaccctcagtacaaccctcagacgccg
ggcacgcctgctatgtacaacacggagcagtactctccgtacgccgccccctcccctcag
ggctcctaccagcccagcccctcccctcagagctaccaccaggtggcgccctctccggtg
ggataccagaacacacattcccccgccagctaccaccccacaccctcccccatggcgtac
caggccagtcccagtcccagtccagtggggtacagtccgatgacccccggagccccctcc
cccggagggtacaaccctcacacgcccgggtccaacatcgagcagggcggcagcgactgg
gtcacgcccgacatcttagtgaagatcaaagactccttcatggacctgatggggcagagc
ggagtcatccggagcgtcacgggtgggatgtgctcggtgttcatgcaggagtctgagaag
gtggtcagcatcagcagcgatcacctggagcccgtcacccccaccaagaacaacaaggtg
aaggtgatcctgggcgaggacagagaggccacggggatcctgctcagtatcgacggagac
gacggcatcgtgcggatggagctggacgaccagctgaagatcctcaacctgcgcttcctg
ggccgcctggagcactga
DBGET
integrated database retrieval system
