Trematomus bernacchii (emerald rockcod): 117477243
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Entry
117477243 CDS
T09643
Symbol
cicb
Name
(RefSeq) LOW QUALITY PROTEIN: protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117477243 (cicb)
Transcription factors [BR:
tben03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117477243 (cicb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
DUF3915
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
117477243
NCBI-ProteinID:
XP_033979797
LinkDB
All DBs
Position
Unknown
AA seq
2010 aa
AA seq
DB search
MSPTTPNLPPSKTTPTQTPTPTSGVGPPCSSRSRTPLSLAQQKYKKGDVVCTPNGIRXKF
NGKQWRRLCSREGCMKESQRRGYCSRHLSMRTKEMEGGGGXGGSSSGTVTPDLRGRASSE
FEWDDTSRESSEAGSRGDSRPHLVLPSILPHDLSSRFDFDECEAATMLVSLGSSRSGTPS
FSPISNQSPFSPAPSPSPSPLFGFRPANFSPITASPILQHRRHRQPSGTGGGGAGGSKVS
AGGGERERHTSGIQPSFHSNLMFTVPMSPSKRKPDAPLPPPLPSHHHDYTPKTEQESGDL
NSSFRVLSPHTQASRTHTPTFSRPRGVTTPSSRPPSSTNVSPPPLLVSPTPPSPLTPDGG
PRRVVPVSQQALRDSPVIVRNPEVPLATFTECPLGRGGGNEGGGDKSSSKDLTPLAPQSI
QGLQVPVPINAAAATVPNGTILLRSASQTLVLASPTPSSLPTADPPAAPLLALSVPSSTT
VTAPAPSSTDSSADENRGTGFGGEVQQPVPCHPSPTALLPLILPAENLHPAPRKDIIMGR
PGTVWTNVEPRSVPVFPWHSLVPFLAPTQSDASSLPGEGHHPVNHPQAASLKTDCQGVAA
QSQEPAEAPPMVERGPPSRPTPSSDEPPPEKEKGDAERERPDSETESDVDDPFLPGVVPE
PPLAISPVKRRTQSLSALPKDGDKSSPGKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQ
DNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWWNKDRKKSSSDGRGVP
GGKDIRERSMSESTEPHSVEMKGVGPSLVGVCERSAAEGHVGQLTRPRAFSQSAVHSLER
SDRGNTQALAELAQMCGDGGSQYPSHAPSLSRSQRGVSEDMTSDEERMVICEEEGDDDVI
EDPYPSSSIDLKCKERVTDSDSENGSGDESDRKRVFAPVICSSSSSHHTPHGRSVSLSSY
PSSKRYEEGRSGGGGFSDHRRKDRGGGGEGKDTFGGEGGGGGGGVQATSLSLTSGQSVIT
TSSAGGHHPSTVGSLSGTFLPGMGAVRVASTVVTNVMRPVISTPLPIASKSRDGGTSSSP
HPPERKSLTPQQQPHFLIGSGGGLPATGGGYYSSSSPHPLGAGHGGVVTNLVLGGALSAQ
PAVQLLTPSHHQQQAFPSSAVSHSQTNGPLPLSLLHPQFLPASSLASHGGKAITQVQYIL
PTLPANTHPKSPPQHLSQPTSIFNLPTAPPTHMSLANGKQQGSGYTSSSAVGVVSPGSRV
QTQSPVLQGKMFVPMATVRTAPASAQQFPIVAPPLPVQNGAQTGSKIIQIAPMPVVQSQL
PQGGAVHPASPFSVSVGTAAPGSAPSQTLLLPPAPTRITYVQSTPGVSSTLVSTTTGSSI
THQALPVSGSAYVPSPLATLGFTAIAPPGQTLVQPLISGQPPLLAPSQSPQPCTSAPVSG
SGAQIVTAIYPPPSPNVTMATGMVSMTAVPSSMVYSVSSASPHILSKHTASPGTVTHTHQ
HPDRHLPADRPADRPADRQADRQADRQADRQADRQADRQADRQADRQADRQADRQADRQA
DRHSEMLMHSDRHAERQTSSSSAAPPSGSAVRSCSPPLQSQTPGSAPGTPKLIQLSVRTP
QKVKATVANIPVGSYEGGGRGKEREREKDRERGREREREKEREREAAAAASSRFSFDAEL
PGQTASPSTHPAEEPPASERPQEGAADPPDTRHRESTNKEGGWKESLPSSPAPPPASEPP
PPPPPTEKESPTPKKVKMRPPPLKKTFDSVDKSGRVLSEVYFEERFAELPEFRPEEVLPS
PTLQSLATSPRAILGSYRRKRKNSTDLDSATDEQVSPKRKSRRRSSCSSEPNTPKSAAKC
EGDIFTFDRAATDGEDILTDMEFDKVPYSSLRRTLDQRRALVMQLFQEQGFFPSAQATAA
FQTRYSDIFPTKVCLQLKIREVRQKIMQTAAPSDVSALGIPDSLCSMPGPSGSQAGEGSL
RGGGDLQDDDMEGGAEGSPEDPRDSHDFSR
NT seq
6033 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgaccacacctaacctacctccatcaaagaccactcccactcagacccctact
cccacttctggtgtgggtcctccttgctcctctcgctccaggacccccctctcattggct
cagcagaaatacaagaagggcgacgtggtgtgcacccccaacgggatccgtnnaaagttc
aacgggaagcagtggaggaggctgtgctccagggagggatgcatgaaggagtcccagcgc
cggggctactgctccagacacctgtccatgaggaccaaagagatggagggaggagggggg
nngggaggcagcagctcagggacagtcacccctgacctgcgggggagagccagcagtgag
tttgagtgggatgacacctcaagagagagcagcgaggcaggtagcaggggagactccaga
ccccacttagtgctcccgtccatcctcccccatgacctctcctcccgctttgacttcgat
gagtgtgaggccgccaccatgttagtgtctttagggagctctcgatctggcaccccctct
ttttctcccatctccaaccagtcgcccttctcacccgccccttctccctctccctccccg
ctgtttggcttcaggccggccaacttctccccgattaccgcctcccccatcctgcagcac
cggaggcacaggcagcccagcgggacagggggaggaggagcaggggggagtaaggtatca
gctggaggaggagaaagggagagacacacttcaggcatccagccctccttccacagcaac
ctgatgtttacggtcccaatgagccccagcaaacgaaagcccgacgcgcctcttcctcct
cccctcccctcacaccaccatgattacacacccaagacggagcaggagtcgggggacctc
aacagctccttcagggtgctgtcgcctcacacacaggcttcccgcacacacacacccacc
ttctcccgacccagaggagtgacgaccccctccagcaggccaccgtcctccactaatgtc
tcccctcctcctctgctggtgtccccgacccctccttctcccctcactccagacggaggg
ccccgtcgtgtggtccctgtatcccaacaggccttacgtgactcccctgtcattgtgaga
aatcccgaagtcccactggccacatttacagagtgtcccctaggaagaggaggtggaaac
gagggagggggagataaaagttcatctaaagacctcacacccctcgcccctcagtcaatt
cagggcctccaggttcctgtccccattaacgctgctgcagccacagtacctaatggcaca
attctgctgcggagcgcgtcccaaactctggtgctcgcgtccccgaccccctcttcactg
cccacagctgacccccccgccgcccccctgctggccctgtcagttcccagcagcacaaca
gtcacagctcccgctcccagcagcacggactcctctgcggacgagaacagggggaccggg
tttgggggtgaggtccaacagccggtcccctgtcacccctctcccaccgctctgctgccc
ctgatccttcctgccgaaaaccttcaccccgccccacggaaggacatcatcatgggacgt
cccggcacagtctggaccaacgtagagccccggtcagttccagtcttcccctggcattca
ttggtccccttcctggcacccacccaatcagatgcttcttctctgccaggagagggccat
caccctgtcaaccacccccaagcagccagtctgaagacagactgtcagggggtggcagca
cagtcacaagagcctgcagaggcacctcccatggtagagagaggtcctccatcccggcct
accccctcttctgatgagccgcctccagagaaggagaaaggcgatgcggagagggagagg
ccagacagcgaaacagagagtgacgtggatgacccctttctcccaggcgttgtaccagag
cctcccctcgctatatcacccgtgaagagacgcactcagtccctcagtgcgctgcccaaa
gatggagataagagcagccctggaaagagggagaaggaccacatccggcgaccaatgaat
gcatttatgattttcagtaagcgccatcgagcattggtgcaccagcggcacccgaaccag
gacaacaggacagtcagcaagatccttggggagtggtggtatgccctgggacccaaagag
aaacaaaagtatcatgatttagctttccaggtgaaagaggcccactttaaggcccacccg
gactggaagtggtggaacaaagacaggaagaagtccagctctgatggccgtggggtcccg
ggggggaaagacatcagagagaggagcatgtctgagtctacagagccccattctgtggag
atgaagggggttgggcctagtctggtgggcgtgtgtgaaagaagcgcagcagaaggtcat
gtgggccagctcacccgaccccgggccttctctcaaagcgccgtgcacagcctggagcgc
agtgacagggggaacacacaggctctggcagaactggcacagatgtgtggggatggtggc
agtcagtatccgagtcatgccccgtccctgtctcggtcccagcggggagtcagcgaggat
atgaccagtgatgaggagcgcatggtaatctgtgaggaagagggagatgacgatgtcatt
gaggacccttatcctagcagctccatagacctcaagtgtaaggagcgggtgactgacagc
gatagtgagaacggttctggagatgaaagtgatcgcaagagggttttcgctccagtcatt
tgctcctcgtcttcctcgcatcataccccgcatggcaggagtgtctcactgtcctcttac
cccagcagcaagcgttatgaggaggggcgatcaggagggggagggttttcagatcacagg
aggaaggacagaggaggaggaggagagggtaaggacacatttgggggagaaggaggagga
ggaggaggaggagtgcaagccacatctctctccctcacttctggccaatcagtcatcacc
acttcttcagctggagggcatcatccctccacggtaggatcactgagcgggacctttctc
ccgggcatgggcgctgtgagggtggcgtccacggtggtgaccaatgtgatgcgtcctgtc
atcagcacaccgctgcccatcgccagcaaatccagagacggaggcacatcgtccagccct
catccgccagagaggaagtccctgactccccaacagcagccgcactttctgattggatca
ggaggcggtttgccagccacagggggtgggtactactcttcatcatcacctcatccttta
ggtgcaggccatggtggtgtcgtgactaatttggtgttaggaggggctctgtctgctcag
cctgctgtacagctcctcaccccctcccaccaccagcagcaagccttcccctcctccgct
gtgtctcatagccaaaccaacgggcccctgcctctctccctgcttcatccccagttcctt
cccgcctcttccctagcctcacacgggggtaaggccatcacacaagtccagtacatcctg
cccaccctacctgccaacacccaccccaagagtcctcctcagcatctcagccagccaacc
agtatcttcaacctgcccacagctccacccacacacatgtctctggccaatgggaagcag
caggggtccggatacacgtccagctctgcagtgggagtggtcagcccggggtctagagtg
caaacacaatctccagtgctccagggcaaaatgtttgttcccatggcaacagtacggaca
gcgccagcctctgcccagcagtttcccatcgtggctccaccccttcctgtccagaacggc
gctcagacgggaagcaagatcatccagatagctcccatgccagtggtccagtcccagttg
cctcagggcggagcggtccatcctgccagccccttctctgtctcagtgggcacggctgct
ccaggatcagccccctcccagactttactcctgccaccagctcctaccaggatcacttat
gtccagtccactccaggggtctcatccactctggtctccacgacaacaggctcctccatc
acccatcaagcgctgccggtgtctggatctgcctatgtgccatcgcccctggcaacactg
gggttcaccgccatcgcacctcctggacagaccctggtgcagccgctgatctcaggtcag
cctccgctcctggccccctctcagtctcctcagccctgcacctcggcccctgtctcgggc
tccggggcccagatagtcaccgccatctaccctcctccttccccaaacgtcaccatggca
acagggatggtctccatgacagccgtgccctccagcatggtctactcggtctccagtgct
tcccctcacatcctgtccaaacacacagcatcccccggcactgtcacgcacacacaccaa
catccagacagacacctgcctgcagacagacctgcagacagacctgcagacagacaggca
gacagacaggcagacagacaggcagacagacaggcagacagacaggcagacagacaggca
gacagacaggcagacagacaggcagacagacaggcagacagacaggctgacagacaggct
gacagacactcagagatgctgatgcattcagacagacatgcggagaggcagacctccagc
agctcagcggccccccccagtggctcagctgtgagatcctgcagtcctcctcttcagagc
caaacaccgggcagtgcaccgggaacacccaaactaatacagctctctgtcaggacccct
cagaaggtgaaggcgacggtggcgaacatccccgtgggcagctacgagggagggggccgg
gggaaggagagagagagggagaaagacagggagagggggagagagagggagcgggagaaa
gagagggagagagaagctgctgctgccgcctctagtcgcttctcgtttgacgctgagctg
ccggggcagacggcgtctccatcgacacatcctgcggaggagccccccgcctcagaaaga
ccccaggagggggctgcagacccccccgacacacggcacagagagagcacaaacaaagag
ggtggatggaaggagtctctcccctcctcacctgcgcctcctcccgcctctgaaccccct
ccgccccccccacccactgagaaagagagtccgacacccaagaaagtcaaaatgcgccct
ccacccctcaagaagacctttgactctgtggacaagtctggcagggtgctgtcggaggtt
tacttcgaggagcgctttgcggagctgccggagtttcgtcctgaggaggtgttaccctcc
cccaccctgcagagcctcgccacctcgccccgcgccatcctgggcagctaccggcgcaag
aggaagaactccacagacctggactcagccactgatgagcaagtctctccgaagagaaag
agccggcggcgctcgagctgcagctccgagccgaacacgcccaaaagcgccgccaagtgt
gaaggagacatcttcaccttcgacagagcagccacagacggagaagacatcctgacagac
atggagtttgacaaggtgccgtactcgtccctgaggagaactctggaccagaggagagcg
ctggtgatgcagctgttccaggagcagggcttcttcccatcagctcaggccaccgcagcc
ttccagactcgatactcggacattttccccaccaaggtgtgtctgcagctgaagatccgg
gaggtgcggcagaagatcatgcagacggccgcgccctccgacgtctccgcgttagggatc
cccgactctctgtgctccatgcccggcccctcgggctcccaggcaggggagggctctctg
cgggggggcggggacctgcaggacgacgacatggaggggggggcggaggggagccctgag
gaccctcgggattcacacgacttttcaagatga
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integrated database retrieval system
