Trematomus bernacchii (emerald rockcod): 117477337
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Entry
117477337 CDS
T09643
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117477337
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tben03310
]
117477337
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
117477337
Nuclear receptors [BR:
tben03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
117477337
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
117477337
NCBI-ProteinID:
XP_033979908
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MYFVISAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQKSNASYSCPRQKNCL
IDRTSRNRCQHCRLQKCRTVGMSRDAVKFGRMSKKQRDSLYAEVQKHLLQQQKNQEGPSL
LLTLPSIETPILGEAEPLSPLYGPPTSSITELQDEGYMVQNSPEGGSVSSKADSGGGGRG
GGRGGGGRGRGRGGGGRGRGETQGFYLDIQPSPDQSGLDINGIKPEPLSDFSSNNGFFPL
CSLSDGDPSSLSMAELEDLAQVTSQSHLETCQFLREQEVREAFLQEEVQRYQSKPREEMW
QLCAVKITEAIQYVVEFAKRIEGFMDLCQNDQIVLLKAGSLEVVLVRMCRVFDSQNNSVF
FDGKFAGPDVFKALGCDDLISSVFDFAESMCSLRLSEEELALFSAYILLSADRSWLQDKL
QVEKLQQKTELALKHVLQKNQREEGALSKLRCKVSALRSLCSRHSENLSAFRAVYPDIVT
THFPPLYRELFGGDMELNMELNMHHSDL
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtattttgtgatttctgccatgaaagctcagattgaaatcatcccctgtaagatctgt
ggagataaatcctcggggatccactacggggtgatcacctgtgagggctgtaagggtttc
ttcagacgcagtcagaaaagtaacgccagctactcgtgtccgcgacagaaaaactgtctg
atcgaccgaacgagccgaaaccgctgccaacactgccgtctgcagaagtgtcggaccgtg
ggcatgtccagagatgctgtgaagttcggccgcatgtcgaagaagcagcgggacagtctg
tacgctgaggttcagaaacacctcctccagcagcagaagaaccaggagggaccctctctc
ctcctgactctccccagcatcgagaccccgatcctgggggaggccgagccgctctccccc
ctctacggccccccgacctccagcatcacagagctgcaggacgagggatacatggtgcaa
aactcccctgaaggagggtcagtgtcttcaaaggcagactcaggaggaggaggaagagga
ggaggacgaggaggaggaggaagaggaagaggaagaggaggaggaggaagaggaagagga
gaaactcaaggtttctacctggacatccagccgtcccctgatcagtcgggcctcgatatt
aacggcatcaaaccggagcctctgagcgacttcagctccaacaacggcttcttcccgctc
tgctccctcagcgatggagacccttcctcactgtccatggctgaactcgaggacctggct
caggtgacctctcagtctcacctggagacctgtcagttcctgagggagcaggaggtcaga
gaggccttcctgcaggaggaggtgcagagataccagagcaagcctcgggaggagatgtgg
cagctttgtgccgtgaagataacggaggccattcagtacgttgtggagttcgccaaacgc
atcgagggcttcatggatctgtgtcagaacgaccagattgtgctgctgaaagctgggtct
ctggaggtggtgttagtgcggatgtgtcgcgtcttcgactctcagaacaacagtgtcttc
ttcgacgggaagttcgccggaccggacgtcttcaaagctttaggttgtgatgacttgata
tcctcagtgtttgacttcgctgagagcatgtgttcgctgcgtctgtcggaggaagaactc
gctctcttttcagcctacatcctgctctctgcagaccgctcatggctgcaggataagctt
caggtggagaaactgcagcagaagacggagctcgctctgaaacacgtgctgcagaaaaac
cagagagaggaaggagccctgagcaagcttagatgtaaggtgtcagcgttgcgttcgctg
tgcagtcgtcactcggagaacttgtcggccttcagagccgtttaccccgacatcgtgacg
actcactttcctccgctgtaccgggaactgttcggaggagacatggagctcaacatggag
ctcaacatgcaccacagcgacctctga
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