Trematomus bernacchii (emerald rockcod): 117477346
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Entry
117477346 CDS
T09643
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117477346 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117477346 (arid1b)
03021 Transcription machinery [BR:
tben03021
]
117477346 (arid1b)
03036 Chromosome and associated proteins [BR:
tben03036
]
117477346 (arid1b)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Helix-turn-helix
ARID
117477346 (arid1b)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117477346 (arid1b)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117477346 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117477346
NCBI-ProteinID:
XP_033979934
LinkDB
All DBs
Position
Unknown
AA seq
2310 aa
AA seq
DB search
MAAQVASAPTRTNNTNKKLSSGLCPELNSGKSGGGGSVQRTGPMLGSGDGTLNNVDHHRR
NELNMVHSTSTTHNASDGHDKDGNNLTSASASTNSSTSSMETGLIANHKLKCVGSGDPPQ
SQPPQQQQQPPQFGQFAPHQQRQIQSNNTANNNGQGPRGDKGMDHQHHGGKENLLGGQGE
PQQHMPGKGEGELTCKPAERMMGTRYEHSNLGPTSNNSEFNNNYYTPRPCYEQHGGQQQQ
SSGMGITHSSAQNSMENSHEAGYQNSQYNQYPAYRAGYGGGAYGMMGPTGGRQPGNMMMG
SNSSASHSKSPLGAASGGFQRFPGQTQQQQQPQQQQHPSGATPTLNQLLTSPSPMMRGYG
GAYQDYSGPTAQQQAGMGLGKDAGPQYGANSAHGWGGQQRNHPQMSPGNGGQGLGRAQVS
SMDFMAMKRSQLYSMANNAYSSQQQGGGPYPPNQPYTSPPPHRYPMSMQGRPQMGMAGMQ
YPQQQQVAPYGQQGMGGFSQQQQAGQQGNPPYFSPPQQTPPGPAQSPYLQPRPPPPTGTN
TSSSEPDTHCAEAQQETYGPRGPAPGNSGKANNEDGVPQDRPSSLPDLSGSIDDLPTGTE
GGLGSAVSVAGSSSSSTSSQGEQGGAGNQGQSPFSPHASPHLASQRSGPSPSPVGSPAGS
TQSQHSRSGSGPISPASGPPANTSAPGSAMASQSSGNGPEGAHPPNTRSPMAQEKGFMSN
MQRNQPGSQFASPQSGPPMSPHPSPGGPLYPGMGPYSQSGPSGSHGPQGSQYGHQGNYPR
SSNYSGPASTGYSGPGPGMTNSLGMNASSPMHGQGPGQPIPVGRSHGAGSQNRVYPPMAP
SSPGMPQPAGPGMGPPSLGSSNRKAQEAAAAAMPGSANSTHNRRPPYARSQAQMQPRHPT
STHWPAPYPTSTSTCPPPSPPLRPHHPPILPPSHSQHHRQGSYQGQSISQASTMATTVPY
SQPTGNNSSAMSNAQAPAYNMPPSGDMGMSGDGMMSPDVKAKADVKDDSVPANEPHKPKQ
LQDGYSNTNSSSSQQCVSQPTTPGGALPVPSPLSPSPASLSSYHGDDSDSISSPPWPLKT
PSSPKPNPNSSSLSGERITRLFDLGVEPERRGWVERYLTFMEERGTPVAQLPTVGKKPLD
LWKLYIAVREIGGLAMVNKNKKWRELSSTLNVGTSSTSASSLKKQYIQFLFAYECKTERG
EEPPADSSSMAGGDSRKQVKIQPPSPANSGGSLQGPQTPQSSGSSSTAEAAGDLKPPTPA
TTPLGQVTPLPPNRSSVSVQDPFSEVSDPAFQKRVTPLPPSAPYQQGLSMPDMMMRMQYD
TKDPFAGMRKMAGADPYIPGQMPSGGMQDMYGRPPSALSMSQRSQYPYGPGYDRRPDHVM
GMEGNMGPPGSQNNMGPSNSEGSMYSPSRYPSQQRHDGYSQQYPSMPYGMHPSGMYPQQQ
GYKRPMDGMYGPPPKRHESDMYAMQYANQQPDMYNHYGGGYSGPDHRPLQGQFPYPYPRD
RMGPSGQSQHSMMGGGPTPNHAADGPNMWPSRTDLGYPYPNRQGPPSQMPPYMSREDMEG
RPGQEQWHRQSPYMSSSGGMMPLTSRQPSSYSNSPSMLNHLPRAPSPGAFQRSMDPRMSP
GKAPFMSAMKMTKPGMSMMGPQGPLGHYPHNLRRDLNYPPGSVEATMPLLKPRRRLTSKD
TGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVGSFNLSQLPGFLELIVEYFRRY
LIEIFGILEEFEVGAVAQKIILDPAADQKEEAPADQETESSAQPEPHAAPGAEVEKAAAI
VEKTPPDTAEPAEVNGETEVSVKKEEDGEKEVEAESGKAVESKKESAETEPKPKQASKYD
RLPIKIVHKEELTEDMMEHLGYVTEFTSGLLHWQAGGGDSTAHIQTQFEPRSEPPARAEG
KTNKEEDNREDDGKKHFTATIDDVLCARVDALSYAHPARSLPSYPFRVHEDGEQDHITLL
EDEPRCQDEAPLSTSSAGQDALAKRCLCVSNIVRSLSFIPGNDLDMSRHPALVLLLGKLL
LLHHQHPERNRSPPGYRRDELQEQGSSSSEGEWWWECLGLLRENAMVTLANISGQLDLST
YPDTICLPILDGLLHWMVCPSAEAQDPFPSATAHSQLTPQRLVLECLCKLSIQGGNIDLL
LATPPFSRQEKLFTVLLRYIAQRKAQVYREMAVALLSHLAQGDPTAACAITMQKGSVGNF
VGFLEDGVSMVQYQQNPHSLLHMGHPPMDPPSTNMMCRAAKGLLAMAKVAENKTEFVLYE
SRLLDMSISSVLNAGVVAIICQVLFHLGKL
NT seq
6933 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagttgcatcggctccgaccagaactaataacacaaataagaaattgtca
agcggtttgtgtccggagctcaattcggggaaatcaggaggaggagggtccgtacagcgg
actggaccgatgctgggctccggagatgggactctgaataatgtagaccatcaccgccga
aacgagctcaacatggttcattcaacttccacgactcacaacgcttcggacggccacgac
aaagatgggaataacctcacgtccgcctcggcttcgactaattcctccacttcctcgatg
gaaacgggtttgattgcgaaccacaagctgaaatgtgtggggagcggagatccccctcag
tctcagccgccgcagcagcagcagcagccgccgcagttcggacaatttgcgccacatcag
cagcgacagatccaaagtaacaacaccgccaacaacaacggccaggggccccgtggggac
aaggggatggatcaccagcaccacggcggcaaagagaacctgttggggggccagggagag
ccacagcaacacatgccaggaaaaggtgagggggagctcacctgtaaacccgcggagagg
atgatgggtaccaggtatgaacactctaacttggggccaactagtaacaactctgagttt
aataacaactattacactccgaggccttgttatgagcaacatggcggacagcagcagcag
agcagtgggatggggataacgcactcttcggcacagaacagcatggagaactcccacgaa
gcggggtaccagaacagccagtacaatcagtacccggcgtacagggcaggctacggcgga
ggggcctacgggatgatgggccccaccggaggcagacaacctgggaacatgatgatgggc
agcaactcctcagcaagccacagcaagtcccctctgggagctgcttcggggggctttcag
aggttcccgggacaaactcagcagcagcagcaaccgcagcagcagcagcatccctcaggg
gccaccccgactctaaaccaactgctgacgtcccccagccccatgatgcggggctatggc
ggtgcatatcaagactacagcggccccacggcgcagcagcaagcaggcatgggcctaggg
aaagacgcggggccccagtacggagccaactcggctcatggatggggagggcagcagaga
aaccatccgcaaatgagtccagggaatggagggcaaggcctcggcagggctcaggtgtcc
tccatggacttcatggctatgaagcgctcgcagctgtacagcatggccaacaatgcctac
tccagccaacagcaagggggcgggccttaccctccaaaccagccatacacatcgcctcct
ccgcacagatatccaatgagcatgcaggggaggcctcaaatgggcatggccgggatgcag
taccctcaacagcagcaggtggcgccatatggacagcaggggatggggggcttcagccag
cagcaacaggcggggcagcaggggaaccctccgtacttcagccccccccagcagaccccg
ccaggacccgctcaaagcccctacctgcagcctcgaccaccccccccaacaggtactaac
accagctcatcagagccagacacacactgtgctgaggcccagcaggagacgtatggccct
aggggtccagccccagggaactctgggaaggccaacaacgaggatggcgtcccccaggac
cgcccatctagtctcccggatctgtccggctccattgatgacctccccactgggacggag
gggggtctgggctccgccgtcagcgtggccggctcttccagcagcagcaccagcagccaa
ggggagcagggaggggccggcaaccagggacagtcccccttctcccctcacgcctccccc
cacctcgccagccagaggagcgggccctctccgtcccctgtgggctcccccgcaggctcc
actcagtcccagcactcgcgctccggctccgggcccatctctcctgccagcggaccccca
gccaacacctctgcaccaggttctgcgatggcctcacagagctctgggaatggaccagaa
ggagcccacccgccaaacacccgctcacccatggctcaggagaaagggttcatgtctaac
atgcagaggaaccagccaggctctcagtttgcttctcctcagtcaggacctcccatgtcc
ccccacccctcacctgggggcccattgtatcctgggatgggtccctactcccagagcggc
ccttctggttctcatggacctcaaggatcacagtatggacaccaaggtaactaccctcgg
tcctccaactacagtgggcctgccagtactggctacagcggccctggccccggcatgacc
aacagtctgggaatgaatgctagcagccccatgcacggccaggggcccggccagcccata
cctgtgggacgcagccatggcgcaggcagccagaacagggtgtacccacccatggccccc
agctcccccggcatgccccagccagctgggcccgggatgggccctccctctttgggtagc
tctaaccgcaaggcccaggaggcagcagcagctgccatgccgggatctgccaactcgaca
cacaacaggcggcctccttatgcgaggtcccaagcccagatgcagccacgtcatcccacc
tccacccactggcctgcaccctaccccacctccacctccacctgtccaccaccttcccct
ccactcagacctcaccatccacccatcctgccaccctcacattcacagcaccataggcag
ggcagctatcagggccagagcatcagccaggccagcaccatggctaccactgtgccctac
agccagccaacggggaacaacagctccgccatgagcaacgcacaagctccagcatacaac
atgccaccttcaggagacatgggaatgtcgggagacgggatgatgagccctgatgtgaaa
gcgaaggcggacgtaaaagacgacagcgtccccgccaacgagcctcacaaaccaaagcag
ctacaggacggctacagcaacactaacagcagcagctcccagcagtgtgtgtcgcagccc
accacgccagggggtgcgctgcccgtgccctcccccctctcccccagcccagccagcctg
tcctcctaccacggagacgacagcgacagcatcagcagccccccctggcccctcaaaacc
ccctccagccccaaacccaaccccaactcctcctctctcagtggggagcgaatcacgcgg
ctctttgatcttggtgtggagccggagaggcggggctgggtggagcgatacctgaccttc
atggaggagaggggcacgcctgttgctcagcttcccactgtgggcaagaagcccctggac
ctgtggaagctctacatagctgttcgtgagataggaggcctcgccatggtaaacaagaac
aagaagtggcgcgagctgtcctccaccctgaacgtgggcacatccagcacctccgccagc
tcgctgaagaagcagtacatccagttcctgtttgcctacgagtgtaagacggagcggggg
gaggagccgccggcagacagcagcagcatggccgggggggacagcaggaagcaggtcaag
atacagcccccctcacctgcgaattcaggcggctccctccaaggcccgcagacgcctcag
tcctccggcagcagctctacagcggaggcagcgggagatctgaaaccccccacccctgcc
accacccctctgggacaggtcacacctctgccccccaacaggagcagtgtgagcgtgcag
gatcccttctcggaggtgagcgaccctgccttccagaagcgtgttacccccctgcccccc
tcagctccctaccagcagggcctcagcatgcctgacatgatgatgaggatgcagtatgac
accaaggaccccttcgccgggatgaggaagatggcaggagctgacccctacattccgggt
cagatgccgagtggaggcatgcaggacatgtatggtcgccccccgtcggcgctgagcatg
agccagcgctcgcagtacccgtacgggccgggctacgacaggagaccggaccatgtcatg
gggatggaggggaacatgggtccccctgggagtcagaacaacatgggaccttccaacagt
gagggcagcatgtactctcccagcagatacccttcacagcagagacacgatggctacagt
cagcagtatcccagcatgccatacgggatgcatccatctgggatgtacccacagcaacag
ggctacaaacggccaatggacggcatgtacggccccccccccaagagacacgagagcgac
atgtacgccatgcagtacgccaaccagcagccggacatgtacaaccactacggcgggggg
tactcgggccccgatcacagacccttacagggacagttcccctacccttatccccgcgat
cgcatgggcccctcaggtcagagccagcacagcatgatgggtggggggcccactcctaac
catgcggccgatggccccaacatgtggccctccagaacagacctgggctatccttacccc
aacagacaggggccgccgtcacaaatgcccccctacatgagtagagaggacatggagggg
cgcccgggacaggagcagtggcaccgtcagtccccttacatgtcatcatcggggggcatg
atgcccctgacctcacgccagccatcttcttactctaactctccctccatgctcaaccac
ctgcccagggcccccagcccgggggccttccagcgctccatggaccccaggatgtctccg
ggcaaggctccgttcatgtcagccatgaagatgacaaagcctgggatgagcatgatgggc
ccacaggggcccctcggtcactacccccacaacctgaggcgggacctcaactacccccca
ggatcagtggaggccaccatgcccctcctcaagccccgacgcagactcacctccaaggac
accggaacgccggaggcctggcgcgtgatgatgtcgctaaagtccggcctgctggcggag
agcacctgggcgctggacaccatcaacatcctgctgtacgacgacagcactgtgggctcc
tttaacctctcgcagctgcctggattcctagagctgattgtggagtacttccgccgttac
ctgatcgagatctttggcatcctggaagagtttgaggtgggggccgtggctcagaaaata
attttggaccctgctgctgaccagaaagaagaagcgcccgctgaccaggaaacagagtct
agtgctcaacctgaacctcacgcagctccgggagcagaggtggagaaagcggcggccatt
gtggaaaaaactccaccagacactgcagagccagccgaggtgaacggtgagacagaggtt
agcgtcaagaaggaagaggacggagagaaagaggtggaggcagagagtggaaaagcagta
gagagtaaaaaggagagcgcagagacggagcctaaacccaaacaagctagtaaatacgac
cggctccccatcaagatcgtccacaaggaggagctgacggaggacatgatggagcactta
ggctacgtcaccgagttcaccagcgggttgctccactggcaggcaggcgggggggattcc
accgcacacattcaaacacaatttgaaccccggagcgaaccacctgccagggcggaggga
aagacaaacaaagaggaagacaacagagaggatgatggaaagaaacatttcaccgcgaca
attgacgatgttctgtgtgctcgggtcgacgccctctcctacgcccaccccgcccgctcc
ctgccctcctaccctttcagggtgcacgaggacggcgagcaggaccacatcaccctgctg
gaggacgagccgcgctgccaggacgaggctccgctctccacctcctccgccgggcaggac
gcgctggccaagcgctgcctctgcgtctccaacatcgtgcgcagcctgtccttcatcccc
gggaatgatttggacatgtcccgccaccccgcgctggtcctcctcctgggcaagctgctc
ctgctgcaccaccagcacccggagaggaacaggtcgccgcccggctaccggagggacgag
ctgcaggagcaggggtcctccagcagcgagggggagtggtggtgggagtgtctgggtctg
ctcagggagaacgccatggtcactctggccaacatctcgggccagctggatctctccacc
tacccggacaccatctgcctccccatcctggacggcctactccactggatggtgtgcccc
tcggcagaagcccaggaccccttcccttcagcaacagcccactcccagctcactccccag
aggctggtgctggagtgcctctgcaagctcagcatccagggcgggaacatcgacctcctg
ctggccacgccccctttcagccgccaggagaaactcttcaccgtgctgctgcgctacatc
gctcagaggaaggcgcaggtgtaccgggagatggccgtggctttgctctcccacctggca
cagggagaccccacggcggcgtgcgccatcaccatgcagaaaggcagcgtgggtaatttt
gtaggcttcttggaggacggcgtcagcatggtgcagtaccagcagaaccctcacagcctg
ctgcacatggggcacccccccatggacccgcccagcaccaacatgatgtgccgagcggct
aagggcctgctggccatggccaaagtggcggagaacaagacagagtttgtgctgtacgag
agccgattattagacatgtccatttcctccgtgctcaacgcgggggtggtggctatcatt
tgccaagttctcttccacttagggaaattgtga
DBGET
integrated database retrieval system
