KEGG   Trematomus bernacchii (emerald rockcod): 117477483
Entry
117477483         CDS       T09643                                 
Symbol
kdm5c
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 5C
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
tben  Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:tben00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tben01009]
    117477483 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tben03036]
    117477483 (kdm5c)
Enzymes [BR:tben01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     117477483 (kdm5c)
Protein phosphatases and associated proteins [BR:tben01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117477483 (kdm5c)
Chromosome and associated proteins [BR:tben03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117477483 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD DUF7793
Other DBs
NCBI-GeneID: 117477483
NCBI-ProteinID: XP_033980047
LinkDB
Position
Unknown
AA seq 1602 aa
MEGEEFVPPPECPVFEPSWEEFQDPLGYIAKIRPIAEKSGICKIRPPQDWQPPFSVELDT
FRFTPRIQRLNELEAETRVKLNYLDRIARFWEVQASSLKIPHIERRILDLFALSRIVTHE
GGFEMVCKERRWARVAQRLGYPPGKNIGSLLRSHFERIVYPFEMFQSGSSLPHYKPKHYD
GEEVDKEYKPHSIPLRQSVQPSKMSSYGRRASRCQPDGPEDLAPHPLTTGSQLISAPEPT
EEDIEKNPELKKLQIYGAGPKMMGLGLMAREKGLRKKDEPPQTIKESVSPAPGDTSVKTE
TLEPQEEKKSDGSTSSPQPPPQTVPVKAEVKTEEPGEEEEEEEGGGKGKGKYEEGAVAKG
PFPKMKMRLRGNLNNPQCVDSFVCRMCGRGDDDEKLLPCDGCDDNYHTFCLLPPLTDLPK
GNWKCPKCVAEECKKPAEAFGFEQATREYTLQSFGEMADAFKADYFNMPVHMVPTELVER
EFWRLVSSIEEDVVVEYGADIHSKEFGSGFPMDNGKKTLTKEEEEYARSGWNLNVMPVLE
QSLLCHINGDISGMKVPWLYCGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSVAAE
RLEAVMKKLTPELFEYQPDLLHQLVTIMNPNILMSHGVPVVRTNQCAGEFVITFPRAYHS
GFNQGYNFAEAVNFCTADWLPAGRSCIDHYRRLRRYCVFSHEELTCKMAATPEKLDLNLA
AATHREMFSIVQEERKLRKGLMERGITEAEREAFELLPDDERQCDTCKTTCFLSALACSN
CPERLVCLYHTQDLCNCPTEKLYLRYRYTLDELLAMLHRLKVRSESFDSWANRVKEALEQ
EEGNKIGIADLELLKTEAAERKFPDNELLRKLNTVLKDIERCQQTSTDFLLSNSGSSESR
MTLAELKSLVETMQNLPCVISQLEQVQAVLRTVEDFQSQAQTLASAWRRDSPPEELQSLL
ERGATLPVLVPECENLEGLKEQGVWLDEVRRTLGTEGGERQEVMLDVLRTLMEAGCNVSQ
SVSVETAMAELQELLTIAERWEEKAQICLEQRQKHPLSTLEAIVNEAQLIPVKLPNILAL
QGCLTRAQAWVTDLEEIQNGEHYPCLDDLEGLVAIGRDLPVYMEELRQLELQVASAHSWR
EKATKTFLKKSSQHSLLEVLCPCAKRRERRDEMDQLDEPLEDSDSNTLGLSAHDLRDPAA
IVMAFKEGEQQEKEALLRLQKGNMCKSGLNSAGGSSNSSSGSEEKENGRWDMDNAMETDI
SSHSENSLSENGNHTHTPQAVCVCSAQPRAPQLRCHLCKDWFHGGCVSFPSLFPSSGPQE
SALCWWDWDSRFLCPRCQRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERTITWQG
RAKEALETPELQGALQRLQELKETLRQEAERDNGEKVRSSVIVLSDSEGGEGEEGVIDLT
DENSPKKKSKESNGVPAGCENGINKKLNVTGVGSLLALLPLLKGGVVELLPASREQLEDL
QLEGDLLEVSLDQSLTIHRVLQAASSPPTDTLRTLIQIELEEQRRSSRGRAKDSKRKRKS
HRGGSGEGAGGRSLDSSESKKTCPLKHSSPPQLPVYTKPEIL
NT seq 4809 nt   +upstreamnt  +downstreamnt
atggaaggggaagagtttgttcctcctccggagtgtccagtgtttgagccgtcatgggag
gagtttcaggatcctctgggctacatcgccaagatacgtccaatcgcagagaagtctgga
atctgcaaaatccgacctccacaagactggcaacctccgttctcagtggagctggacacc
tttcgcttcacaccccgcatccagaggcttaatgagctggaggcggagaccagagtgaag
ctgaattatttggaccgcatcgccaggttctgggaggtccaggcgtcctcgttgaaaatc
cctcatattgaaagacgcatccttgatctattcgcgctgtcaaggattgtgacgcatgaa
gggggttttgagatggtgtgtaaggagcggcgctgggctcgtgtggctcagaggctcggt
taccctccggggaagaacatcggctctctgctgcgctcgcacttcgagaggatcgtctac
cccttcgagatgttccagtctggctccagcttgccgcattacaagccgaagcactacgac
ggagaggaggtggataaagagtacaagcctcactccatcccgctgcgacagtctgtgcag
ccgtccaagatgagcagctacggacgcagagctagccgctgccagcccgatggtccagag
gatctggccccccatcctctcaccactggctctcagctcatctctgcgcctgaacccaca
gaggaggacatcgagaagaacccagagctgaagaagctgcagatctacggcgccgggccc
aagatgatgggcctcggactgatggcgagggagaaaggcctccgaaagaaagacgagccg
cctcaaaccataaaggaaagcgtgtctcctgctcccggtgatacttcggtcaaaacagag
acactagagcctcaggaggagaagaagagtgacgggagcacatcgagcccacaaccccct
cctcagactgtccccgttaaggctgaagtgaagacggaagaaccaggagaggaagaggag
gaggaggaaggaggagggaaagggaaggggaaatatgaggaaggagccgtagcaaaagga
ccttttcccaaaatgaaaatgaggctccgaggcaacctcaacaacccgcagtgtgtggac
tcttttgtgtgtcggatgtgtggtcgaggagacgatgacgagaaactgttaccgtgtgac
ggctgcgacgataactaccacaccttctgcctgctgccccccctcactgatcttcctaaa
ggcaactggaaatgcccaaaatgtgtcgcagaggagtgcaagaaacctgcagaagcattc
ggctttgaacaggcgacacgagagtacaccctgcagagtttcggggaaatggcggacgcc
ttcaaagcagactacttcaacatgcctgtccatatggttcccacagagctggtggagagg
gagttctggaggctggtgagcagcatcgaggaggacgtggtggtggagtacggagcggac
attcactccaaagagttcggcagcggcttccccatggacaacggcaagaagacgctcaca
aaggaagaggaggagtatgctcgcagcggctggaacctgaacgtgatgccggtgctggag
cagtcgctgctgtgccacatcaacggagacatctctgggatgaaggtgccctggctgtac
tgcgggatggtgttctctgccttctgctggcacatcgaggaccactggagctactccatc
aactacctgcactggggggaaccgaagacgtggtacggggttccctctgtggcggcggag
cgtctggaggccgtcatgaagaagctgaccccagagctgtttgagtatcaacctgacctc
ctgcaccagctggtcaccatcatgaaccccaacatcctcatgtctcacggcgtaccggtt
gttcgtactaaccagtgtgcgggagagttcgtcatcacgttccccagagcgtaccacagc
ggcttcaatcagggatacaactttgctgaagctgttaacttctgcactgcagactggctg
cctgccggtcgctcctgcatcgatcactaccggcgcctccggaggtattgtgtgttttcc
cacgaggagctcacctgtaaaatggccgccacaccggagaagctggacctgaacctggca
gcagcgacgcaccgcgaaatgttcagcatcgtccaggaggagaggaagctgcgcaaggga
ctcatggaacggggcatcactgaagcagagcgtgaggcgtttgagcttctgcccgacgac
gagcgtcagtgtgatacatgtaaaaccacctgcttcctctccgctctcgcctgttccaac
tgtcccgagcgcctcgtgtgtctctaccacactcaggacctgtgcaactgccccacggaa
aaactctacctcagatacagatacaccctggacgagctgttagccatgttacacagatta
aaggtccgctccgagtcctttgactcctgggccaacagagtgaaggaggcactggagcag
gaggaaggaaacaagataggaattgctgatctggagttactgaagacggaagcagcagag
agaaagttccccgacaacgaactcctgcgtaaactcaacactgttcttaaagacatcgag
cgctgccagcagaccagcactgacttcctcctcagtaactcaggcagcagtgagagcagg
atgacgttggcagagctgaagtcgttggtagagaccatgcagaacctgccctgtgtgatc
agccagctggagcaagtgcaggctgttctgcggacggtggaggatttccagagccaggct
cagactctggccagcgcctggaggcgggactctcctcccgaggagcttcagtctctgctg
gagagaggagccacgctgcctgtcctggtccccgagtgtgagaacctggagggcctgaag
gagcagggagtgtggctggatgaggtgaggcgcaccctgggcacagagggcggggagagg
caggaggtgatgctggacgtgttgaggaccctgatggaggcgggctgcaacgtgtcacaa
agcgtttctgtggagacggccatggcggagctgcaggagctgctcaccatcgcagagcgc
tgggaggagaaggctcagatctgcctggagcaaaggcaaaagcaccctctctccaccctg
gaggcgatagtgaacgaggctcagctgattcctgtgaagctgccgaacatcctggctctg
cagggctgcctcactcgagcccaggcctgggtcacagacctggaggagatccagaatgga
gagcattacccgtgcctggacgacctggagggcctggtggccatcgggagggacctgccc
gtctacatggaggagctgcgtcagctggagctgcaggtggcctccgctcactcctggaga
gagaaggccaccaagaccttcctgaagaagagcagccagcacagcctgctggaggtgttg
tgtccgtgtgcaaagaggcgagagaggcgggacgagatggatcagctggacgagccttta
gaggattctgactccaacacactgggcctctctgctcacgacctgagggaccctgcagct
attgtgatggcgttcaaagagggcgagcagcaggagaaggaggcgctgctgaggctacag
aaagggaacatgtgtaaatctggactaaactcggcgggggggagcagcaacagcagcagc
ggctcggaggagaaggagaatgggaggtgggacatggacaacgccatggagacggacata
tccagccactcggagaactctttatcagagaacgggaaccacacacacactcctcaggcg
gtgtgtgtgtgctccgctcagcctcgggctcctcagctgcgatgccacctctgtaaggac
tggttccacgggggctgcgtctccttcccctccctgttcccctcctccgggccccaggag
agcgccctctgctggtgggactgggactcgcgcttcttgtgtccgcggtgccagaggtcg
cggcggccccgtctggagaccatcctggcgctgctggtggcgctgcagaggctgccggtg
cgcctgccggagggagaggccctgcagtgcctcaccgagaggaccatcacctggcagggc
cgcgctaaagaggccctggagacccccgagctgcagggggcccttcagaggctgcaggaa
ctcaaagagactctgcgtcaggaggcagagagggacaacggagagaaggtgaggagctct
gtgatcgttttatcagactctgagggaggcgagggagaggagggagtcatcgatctgacc
gacgagaactcgcccaagaagaaaagcaaggagagcaacggtgttccggctggatgtgaa
aatggcatcaacaagaagttaaatgttacaggtgtgggctctctgctggccctgctgccc
ctgctgaaggggggggtggtggagctgctccctgcctccagagagcagctggaggatctg
cagctagagggagacctgctggaggtttctctggatcagagcctcaccatccacagggtc
ctgcaggccgcctccagcccccccacagacacactgcgcacgctcatacagattgagctg
gaggagcagaggcgatcgagccgaggccgagcgaaggactcaaagaggaagaggaagagt
cacagaggaggaagtggagaaggagccggggggcggtcactggattcttcagagtcaaag
aaaacctgccccctcaaacacagctccccccctcagttacctgtctacaccaaaccagag
attttgtga

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