Trematomus bernacchii (emerald rockcod): 117477605
Help
Entry
117477605 CDS
T09643
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117477605 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117477605 (smarcc1b)
03036 Chromosome and associated proteins [BR:
tben03036
]
117477605 (smarcc1b)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117477605 (smarcc1b)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117477605 (smarcc1b)
PBAF complex
117477605 (smarcc1b)
GBAF(ncBAF) complex
117477605 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
117477605
NCBI-ProteinID:
XP_033980207
LinkDB
All DBs
Position
Unknown
AA seq
963 aa
AA seq
DB search
MATMSGGTNLGIPGARLASSGTSAHRKKDSSPSARFWESPETLAQLEVVRQWIGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEDAFGRQAASPVLSKLPAQSFLDLRPAGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFGAIGISLIQNKGMSLPVVYVDPTLDQELVSRLTD
VIAKHQGTLTEDRTLASHHIYPSPASKEEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVEGEVEEPPHSEKPWRVHAGWVLDTDVFNEWMNEEDYCVNERNVAIILRRRIHLRDEQ
DSKHTPSKKRRRSISPPSEGRKKGKKGRRRGPQEEEPEEDLTKDMEDPTPVPNMEEVILP
KNVNLKKDSENIPVKGGTMTDLDELEDDFPGREDEEGRGDIHRLSEGEDNTTEQTHHIII
PSYTSWFNNNSVHSIEKRSLPEFFHGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTSC
RRILTGDVCSVIRVHSFLEQWGLINYQVDAESKPLPMGPPPTPHFNVLIDTPSGLAPLQH
KPLQVSASQNMLFFQEKSREKPSECQNFGLRSDIYTKKIPKTKGVSGREWTEQETLLLLE
ALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSAASLGPLAYQPVPFSQSEN
PVMSTVAFLASVVDPRVASSAAKAALEEFSKVHEESLDKISEASNQPDKTESMEVEKIET
NSTPLQISQVPLRADGLKVEPSVANVTGELVKSENAENILAEEGDGVRVDDDESFDQAEV
DEGRLLEQDLVDGSVVTAAAAALSSAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEIKVRQQREQQAQQAQQAQPG
YTVQPTAVPPASAQPMPNRMIPGGVNAQTMAPRHPGAPNGMYPSSQPDGIAPAQPGPPAA
SHN
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggctacaatgtccggaggaacaaacctcggcattcccggggcaagactagccagctcc
ggaacttccgcacaccggaaaaaagacagcagtccgtccgctaggttctgggagagtccg
gagactttagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatgctccttcgtgtcaggctctggctgcagtcaccctgcagctcctccag
ttccaagaggatgcgtttggcagacaagcggccagtcctgttctctccaaactgcctgca
caaagcttcctggacctgcgaccagcgggtggactctgccacattcttggcactgcctac
aagtttaaggcagagcaaggctggcgtaggtttgacttgcagaatccatcacgaactgaa
aggaatgttgagatgtttggtgcaattggaatatcactgatccagaacaagggtatgtca
ctgcctgtggtatatgtggaccctacgctggaccaggagctggttagcagacttacagat
gtgatcgccaaacaccagggtacgctcactgaggaccgaacgctcgccagtcaccacatc
tacccctcacctgcttctaaagaggaagatgaatggatgcgtcctgtcatgaggaaagac
aaacatgttttggtacactggggcatgcaccctgacagttatgacagttggctgtcctca
agtgatgttgaaggagaggttgaagagccaccacattcagaaaagccgtggcgggtccat
gctggctgggttctggacacggatgttttcaacgagtggatgaacgaagaagactattgt
gtgaatgagaggaatgtagctatcattctgcgccggcgtattcacctcagagacgagcag
gactccaaacacaccccttcaaaaaagagaagacgctccatctctcctccctctgaaggc
aggaagaagggaaagaaggggcgaaggcgtggaccacaggaggaagagccagaagaagac
ttgaccaaagacatggaggaccctacccctgtccctaacatggaggaagttattttaccc
aagaatgtcaacctgaagaaggacagtgagaatattcctgtcaaaggagggaccatgact
gacctggatgaactggaggatgatttcccaggaagggaagatgaggagggaagaggggat
atacatcggctttcagaaggagaagacaacaccacagaacaaacacatcacatcataata
ccgagctacacgtcttggttcaataacaacagcgttcactcgatagagaaacgttcgttg
cctgaattcttccatggaaagaacaagtcaaaatcaccagaaatctacctggcataccgt
aacttcatgatcgacacataccggctcaacccccaggaatacctcagctcaacgtcctgc
agacgcatcctcactggagacgtctgctctgtcataagggttcattcatttttggagcag
tggggtttgattaactaccaggtggatgcagagagcaaacccctgcccatgggaccccca
cccacccctcatttcaatgtattgattgacacaccgtccgggctggccccactacaacac
aaacccctgcaggtgtcagcctcgcagaacatgttgtttttccaggaaaagagcagagag
aagccttcagaatgccagaactttggtctgcgctccgacatctacaccaagaaaatccct
aagactaaaggagtatcaggaagagaatggacggagcaagagacactcttgctgttagag
gccttagaggtgtacagagatgactggaacaaagtatctgagcatgtgggctccagaacg
caggatgagtgtattctccacttcctccgcctgccgatagaagacccttacttagaagac
tccgcggcttccctcggcccactggcgtaccagcccgtgcctttcagccaatcagaaaac
cccgtcatgagcaccgtggccttcctggcctctgtggtggaccctcgggtggcatcatct
gcagctaaggccgcactggaggagttctccaaagtgcacgaggagtcgctggataagatc
tctgaagcgtccaaccagcctgacaaaacagaatcaatggaagtagagaaaattgaaaca
aactccaccccccttcagatctcccaggttcctttaagggcagatgggctcaaagtggaa
cccagtgtggccaatgtgacgggagaactagtcaaaagcgaaaatgctgaaaatatactt
gcagaggagggagacggagtaagagtagatgacgacgagagctttgatcaggcagaagtg
gatgaggggaggttgttggagcaggatctggtggatggcagcgttgtcacggcagcagct
gctgctctttcctccgctgccacaaaggccaagcacctggcagcagtagaggagaggaag
atcaagtccctggtggctctgctggtggagacccagatgaagaagctggagatcaagctg
agacactttgaggagctggagaccatcatggaccgagagaaagaggctctggagcagcag
cggcagcagctcctctctgagagacagactttccacaccgagcagctcaaacaggcagag
atcaaggttcgtcagcagagggagcagcaggcgcagcaggcgcagcaggcgcagccggga
tacaccgtgcagccaacagctgtgcctcctgcttcagctcagcccatgcccaacaggatg
attcctggtggagtaaacgcccagacaatggctcctcgacatcctggagctcccaatggc
atgtacccgtcctctcagcctgatgggatagcaccagctcagccgggccctccagcagcc
agtcacaactga
DBGET
integrated database retrieval system
