Trematomus bernacchii (emerald rockcod): 117477703
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Entry
117477703 CDS
T09643
Symbol
recql4
Name
(RefSeq) ATP-dependent DNA helicase Q4 isoform X1
KO
K10730
ATP-dependent DNA helicase Q4 [EC:
5.6.2.4
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tben03032
]
117477703 (recql4)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117477703 (recql4)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117477703 (recql4)
DNA replication proteins [BR:
tben03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
117477703 (recql4)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
117477703 (recql4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
Drc1-Sld2
zf-CCHC
ResIII
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
117477703
NCBI-ProteinID:
XP_033980311
LinkDB
All DBs
Position
Unknown
AA seq
1649 aa
AA seq
DB search
MDRYNDVKIQLKTWEQGFVKDHQRKPNKEDIDQAPDETRILYKEYRSLKQAKDNRSSDAG
SGHVEQARSTAAVNTPQKEADCWGSHLNRSSQPAPSPRLTAEERDNLQASAQYYGMKLKN
NMGTLGKERPVSLKKSFLPGRVPLNSLKDGLTGQTNSPVATPVKNPFNGPRSSPFTPRRF
NTPHGLASKTPQKAEPEEPCAPFESVKDSCEEPASAAISYSSPSVISSKSCTSKVISSQN
LNISHLAPSPARSSSLLSSLSSPSRPGTLRGDVGATGKLNESIGALGDKEEHVDTFRTPH
KVDDEAGVGALISLRGSPQVIAGFRGGLAGKPSPASRLSFVDKKWLERCQVFGEMGAEVK
PGAGNMEKRGECEEGRETKVKTQEEEKSGKEEIHVAEERKAAKVSGEVKEPKSITHDKTV
SEREPEPSLQHTGKSHQGKRKGKSKAKEDMEEMERGLTPPLTPEEDNEGSNKSKGGKKKG
KKRQREAEHMDAETPEEGGVKKRRRNGKKKEESSDGNPSTAPEGGKKKRSKKKGDEDEEA
EEEKKTKEPTKLPQENLLGEIEEDYKARRAYKTQPAKVKGMQGAEGNFVKINLKKKSHVK
GYALRGAGLRKQIYMEKFQLKGERFGGHGFLSRGGGGGGFRGGGYRGGFRGGMNQSGDIC
YKCGGTGHWAIHCKGPAPPPSAAEDQEPFDLPTLEEVARATGTLQPQPMAASSSTAEEQP
SQDKQGDGSTKDEVLLNVIRPDYERPVVPPPMEPLFPLTDDGKVQEAPPELYEALKELGY
QSFRPGQAEAIMRILSGLSTLVVLSTGMGKSLCYQLPAYMYAKRSNSITLVISPLVSLMD
DQVSGLPANLKAACIHSNMSKKQREAAIEKVKAGEVCVLLLSPEALVGGGGSGAGCLPSA
QDLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVRCLLGLTATATLSTAMDIA
RHLNINDKDGIAVRSAAVPPNLHLSVSMDREKDQALVSLLKGDRFGCLDSIIVYCTRREE
TTRISALLRTCLQGVILKENKNINSNSRAEYNPIGQKKKDLARKKIRKPLKWQAESYHAG
LSSSERRRVQNNFMCGELRLVVATVAFGMGLDKSDVRGVIHYNMPKSFESYVQEIGRAGR
DGEPAHCHLFLNPGGEDLHELRRHIHSDTVDYFTVKKLVQKVFPPCKCKQIHQKQQELEQ
DMEDKEMMEMMDMCDPENLSAPTQQDVEHTDTPENLSAPTQQDVEHTDTPENLSAPTQQD
VEHTDTPEQSTAQESSHPEAAELPLQDCKDEGKEMELEEEKEEQRVKHEEAEGSIKPKDG
KLQEADWLKDQEEDSSDWPKERVCHTHERAIPMEATVEALDVTEEGVETLLCYLELHPQR
FVELLHPTLSVCKIGCYSGPKQLQKLIKICPPIAVVLARRRMAGERVETCDQLEFDVVEV
ADTMGWQLSLVKRGLRQLQWSSVGGRSGVSVELSSLSFYFRSFGDLSDEEMDRVCQFLYN
RVQNQEKTQIYQLTSAFKAFKSVAFPSASSCVDDLDESRSLRLKDLLSDYFDKRRDLSQM
LAPVYIEELDKYKFSDWENQIRADIRSFLSNRSDEKFSGRAVARILHGIGSPCFPAQIYG
RDRRYWRKYIQFDFNQLIRLATQEIIHFK
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggatcgatacaacgatgtaaaaattcagctgaaaacctgggagcaggggtttgtcaaa
gaccaccagaggaaaccaaacaaggaggacattgatcaagctccagatgagaccaggatc
ctgtataaagagtaccgcagtttgaaacaagccaaagacaacaggagcagtgatgcaggc
agcggacacgttgaacaagccagatctacagctgcggtcaacacaccacagaaggaggca
gactgttggggatcccatctgaaccgcagttcacagcctgcaccttctcccagactgaca
gccgaggagagagacaatctgcaggcctctgcccaatactatggcatgaaactgaaaaac
aacatggggacactcggtaaggagagacctgtctcactgaagaaatcgttccttcctggt
cgggtgcctcttaactccctgaaagatggactaactggacagacgaacagccctgttgcg
acccctgtgaagaaccctttcaatggacccagatccagccccttcacaccaagaagattt
aacacaccccacggcctggcttcaaagacaccccagaaagcggagcctgaagagccgtgt
gcaccctttgaatctgtcaaagattcttgtgaagaacctgcaagtgctgctattagttat
agtagtcctagtgttataagtagtaagagttgtactagcaaagttattagttcacaaaat
ctgaatatctctcatctagctccctctccagccagatcttcttcactgttgtcatcatta
tcttctccaagtaggccaggcactttaagaggagatgtaggagccacgggcaaattaaat
gaaagtataggagctttaggagacaaagaagaacatgtggacactttcagaactcctcat
aaggttgatgatgaggcaggtgttggagctttgatcagcttgaggggaagccctcaggtt
attgctggtttcagaggaggactggcaggaaagccctctcctgccagcagattgagtttt
gttgacaagaagtggctggagaggtgtcaggtgttcggagagatgggggctgaggtgaag
cctggagcaggcaacatggagaaaagaggagagtgtgaagagggaagagaaacaaaagtg
aaaacacaagaagaggagaaatctggaaaagaagaaatacatgtagccgaagaaagaaaa
gcagcaaaagtctcgggagaagttaaagagcctaagagcattacccatgacaaaacagtc
agtgaacgtgaaccagaaccttctctacaacacactggaaaaagccatcaaggaaaaagg
aaagggaaatcaaaagcgaaggaagatatggaggagatggaaagaggactgacaccacct
ttaacgccagaagaggacaatgaggggagtaacaaatccaaaggtggaaagaagaaaggg
aagaaaaggcagagagaggcagagcacatggacgcagagacgccagaggagggaggagtg
aagaagaggcggaggaatggtaagaagaaagaggagagctctgatggaaaccccagcaca
gctccagaaggagggaagaaaaagagatccaagaaaaagggagatgaagacgaggaggca
gaagaagagaaaaaaaccaaggaaccaacaaagcttcctcaggagaacttgttaggagaa
atagaggaggactataaagccagaagggcgtataaaactcagcctgccaaagtcaaaggc
atgcaaggggcagagggtaactttgtgaagatcaatctgaagaagaaatcccatgtcaaa
ggatacgctctcagaggtgctggtctacgcaaacagatatacatggagaagttccagctg
aagggcgaacgtttcggtggacatggatttcttagcagaggaggaggagggggtggtttc
agagggggaggatacagaggaggtttcagaggggggatgaatcagtcgggggacatctgc
tacaagtgtggagggaccggacactgggccatccactgcaagggaccagcccccccccct
tctgctgcagaggaccaggagccgtttgacctgcccaccttggaggaggttgccagggca
acaggcacactgcaacctcagccgatggcagcgtcttccagtacagcagaggagcagccg
tcccaggataagcagggtgacggtagcactaaagacgaggtgttgctgaacgtgattcgt
cctgactatgagcgtcccgttgttccacctccaatggaaccactgtttcctctcacagat
gatgggaaagtccaggaagcgcctcctgagctgtatgaagccctgaaagaactcggctat
cagtcatttagacccggacaagcggaagctatcatgaggatcctgtcaggtctctctacc
ctggtagtgttgtcaacagggatgggtaaatcgttgtgctatcagctcccagcctacatg
tatgctaagcgatcgaatagcatcactttggtcatttcccctctagtctccctaatggat
gaccaggtgtctggcctgccagccaatctgaaggcagcctgtattcactccaacatgagc
aagaaacagagagaagctgcgatagaaaaggtgaaggcaggcgaggtgtgtgtgttgctg
ctctccccggaggctctggtggggggagggggatcaggtgcagggtgtctcccctctgct
caggacctccctcctgtggccttcgcctgtattgacgaggctcactgtgtctcagagtgg
tcgcacaacttcagaccctgctacctgagactctgtaaggtgcttagggagcgtttggga
gtgcggtgcttgctgggactcacagctacggccacactttccactgctatggacatcgca
cgacatctgaacatcaacgataaagacggcatcgcagtccgatctgcagcagtgcctccg
aacctgcacctgtctgtgtccatggatagagaaaaagatcaggctttagtgtccttgctg
aaaggagatcgttttggttgtctggactccatcatcgtctactgtactcgcagagaggag
accactcgcatttcagcgctgctcaggacctgcctgcaaggagtgatcctgaaagaaaac
aaaaatataaacagcaacagtcgggcagaatacaaccctataggacagaaaaagaaagac
ttggcaaggaagaagattcgtaaacctctgaaatggcaggcggagtcgtaccatgccggc
ttgtcctcttcagagcgccgtcgtgtccagaacaacttcatgtgcggggagctccgactc
gtggtggccactgtggcgtttggcatgggcctcgataagtctgacgtccgcggcgtcatc
cactacaacatgcctaaaagctttgagagctacgtccaggagatcgggagggcaggaaga
gatggagagcccgcacactgtcacctctttctgaaccctgggggtgaggacctccatgag
ctccgtcggcatatacactcggacacggtggactacttcacagtaaagaaactggtccag
aaagttttccctccatgtaaatgtaaacagattcaccagaaacaacaggagcttgaacag
gacatggaagataaggagatgatggagatgatggatatgtgcgatccagagaacctgagc
gctcccactcagcaggatgtagaacatacagacacaccagagaacctgagcgctcccact
cagcaggatgtagaacatacagacacaccagagaacctgagcgctcccactcagcaggat
gtagaacatacagacacaccagaacagtcaactgcacaggagtcgtcacatccagaggca
gcagagctcccgctccaagactgtaaagatgaaggaaaggaaatggagctggaggaggag
aaagaggagcagagagttaaacatgaagaagccgagggttcgataaagcccaaggatggg
aagttgcaagaagctgattggctaaaggaccaggaagaggacagcagtgattggcccaaa
gagcgggtctgtcacacgcatgagagagcgattcccatggaagcaactgtggaggctctg
gacgtcacagaggaaggtgtagaaacgctgctctgctatctggagctgcacccccagcgc
tttgtggagctgctccaccccacgctgtctgtgtgtaaaatcggctgctatagtggaccc
aaacaactccagaaactcattaaaatttgccctcccattgctgtggtgttggccagaagg
cggatggcgggcgagcgagtggagacgtgtgatcagctggagttcgatgtcgttgaggtt
gcagacactatgggatggcagctatctcttgtgaagagaggactccgacagctgcagtgg
tcctccgttggaggccgtagcggtgtcagcgttgaattgtcttccttatcgttctacttc
cgatcctttggcgacctcagcgacgaggagatggacagagtgtgtcagttcctctataat
cgagtccagaaccaggagaaaacgcagatctaccagctcacctccgccttcaaggccttc
aaaagtgttgcatttccgagtgcatcgtcctgtgtcgacgacttggatgagagtcgcagt
ctgaggctgaaagaccttctgtccgattacttcgacaagaggcgggacctaagccagatg
ctcgcaccggtgtacatcgaggagctcgacaaatataagttttcagactgggagaatcag
atcagagcggacatcagaagttttctctccaaccggagtgatgagaagttttctggaaga
gctgttgctagaatcctccacggcataggcagcccttgttttcctgctcagatctacggc
agggacaggcgctactggaggaagtacatccagtttgacttcaaccagctcatcagactg
gccactcaggagatcattcacttcaagtga
DBGET
integrated database retrieval system
