Trematomus bernacchii (emerald rockcod): 117477816
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Entry
117477816 CDS
T09643
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117477816 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117477816 (cnot3b)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117477816 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117477816 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
117477816
NCBI-ProteinID:
XP_033980457
LinkDB
All DBs
Position
Unknown
AA seq
960 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKGKIWRSEGHLSKLHNAANANQKEKYEADL
KKEIKKLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGL
GLAQKVDPAQKEKEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKENQDRIEE
LKKFIEKHRHHIRMLETILRMLDNDSVQVDSVRKIKDDVEYYLDSSQDPDFEENEFLYDD
LDLDELTQTLVATSPPGQLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGR
STDSEVGQSPVKNGNPSSSLSSSSSSSSSSSSSSCSSSSFVSGLTSSSLVSMAPITGGGP
GPNSHLGSLGGLLSNTSAGSYSNATQQLPHPSAQQQQAKSLVSSAPSAPISIPISSANSH
MASSASSPPNAITQGLFTSSSQAQSLSGPTSTSNSLGLSLGLSLGKGGMSIPTSSMSGSL
GLSGMQASLSNMASLLSGSTPAPYAQAASSGAIGSGLPGSLGGIGISPSTSNSAVGSIGS
GSITVGGPTSSSGGLLGPAPGLSGISSGILGLGSGQSGMQGSSLMSLSPVGGLAPGSGVG
VIGSNGGSSGSAGSGVVGGNMSLSGRPPSQQKQNGSTSGVPFVSFFGDTGYSAVLADSTT
DSALTSASQSLSSQPSCLTSTANQTKDTGSSLLGSICLSSSSPSQAFYSEAKTVSGGSLL
NGPMSYSQSSDSIKPQETLSSLKSMAERAALSSGMEGDVPSLHLTPVSLSCLSSDIFPSS
TTAQSGPPSAPQLSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSER
IRQYLMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKK
QSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaactacaaggtgaaatagatcgatgtctgaaaaaagtagcggaa
ggagtcgaacagtttgaagacatttggcaaaagggcaagatttggagaagtgaaggacat
ctatccaaacttcacaatgcagcgaacgcaaatcagaaggagaaatatgaagcagacctc
aagaaagagattaaaaagctacagcgtcttcgagaccagatcaagacgtgggtggcttcc
aacgagatcaaagacaaaaggcagctagtagagaaccgcaaactcatagaaacgcaaatg
gagcggttcaaaatagtggagagagaaaccaagacgaaggcgtactctaaagaagggctg
ggtctggcccagaaggtggaccccgcccagaaggagaaggaggaggtcggcacctggcta
acgaatacgatagacacgctgaacatgcaggtggaccagttcgagagcgaggtggagtcc
ctctcagtccagaccaggaaaaagaaaggagacaaagagaatcaggaccggattgaggag
ctgaagaagttcatcgaaaagcatcgtcaccacatccggatgctggagaccatactgagg
atgctggacaacgactcagtgcaggtggactccgtcaggaagatcaaggatgatgtggag
tattacctggactcgtcgcaggatccagacttcgaggagaacgagtttctctacgacgac
ctggacctggacgagctcactcagacgctggtcgccacctccccacccggacagctggag
gacgagatcttccagcactccagcagcacccccacctccaccacctcctcttcacccatc
cccccctcgcctgccacttgcactacggagaactctgaagatgacaagaagaggggacgg
tcaacagacagtgaagtcggtcagtcacctgtgaagaacggaaacccctcctcttcatta
tcctcttcctcctcctcctcctcttcttcctcttcttcttcctgctcctcttcttcattc
gtgtctggactgacctcgtcctcactcgtctccatggcgcccatcacggggggaggaccg
gggcccaacagtcacctgggcagcttggggggcctcctctccaacacgtcggccggcagc
tacagcaacgccacccagcagctgccgcacccgtcggcacagcaacagcaggccaaaagc
ttagtgagctccgccccttcagctcccatctccatccccatcagctctgccaacagccac
atggcctcctccgcctcttctccccccaacgccatcacgcaggggctcttcacttccagc
tcccaggcccagtctctgtcggggcccacgtccacctccaacagcctgggcctcagcctg
ggcctctcgctggggaaaggcggcatgtccatccccaccagctccatgtccgggagcctg
ggcctgtcagggatgcaggcgtccctgagcaacatggcgagcctcctgtcgggctccacc
ccggccccctacgctcaggcagcctcctcaggggccatcggctccggcctgcccggctct
ctgggtggcatcggcatcagcccctccacctccaacagcgcagtgggctccatcggcagc
ggcagcatcacggtcggcgggccaacctcctcctcgggggggctgctgggcccggcgccg
gggctgagtggcatcagctccggtattctgggtctgggctccgggcagtcggggatgcag
gggtcctccctcatgtcgctcagcccggtcggagggttagcgcccggtagcggagtgggg
gtcatcgggagcaacggaggcagctcgggatcagcagggagcggagtggtgggggggaac
atgtcgctctccggcaggccgcccagccagcagaagcagaacggtagcaccagcggtgta
ccctttgtgtctttttttggcgatacaggttacagcgctgtgttagcagacagcacaaca
gactccgccctcaccagtgccagccaatcactcagcagccaaccctcgtgtctgacctcc
acagccaatcagactaaggacactggttccagtctgctgggctccatctgtttgtcgtcc
agctccccgtcgcaggccttctacagcgaggccaagacggtgagcggcggcagcctgctg
aacggacccatgtcctactcacagtcctctgacagcatcaagccccaggagactctgagc
agcctgaagtccatggccgagcgagcagcactcagctcagggatggagggagacgtgccc
tccctgcacctcaccccagtctctctttcctgtctatcttcagacattttccccagcagc
actacggcccagtcgggccccccgtcagcgcctcagctctcgctgtcggaggtcagcatc
cccccgtcactgggggtgtgcccgctggggcccgtccccctctccaaagaccagctctac
caacaggccatggaggaggcggcgtggacgcacatgccccacccgtccgactccgagagg
atcaggcagtacctgatgaggaacccgtgccccaccctgcctttccaccaccaggtgccc
ccgccccactccgacactgtagagttctaccagaggctttccacggaaaccctcttcttc
atcttttactacctggagggcactaaggcccagtatctggcagccaaagccctgaagaag
cagtcatggaggttccacacaaagtacatgatgtggttccagaggcacgaagaacccaag
accatcacggatgagtttgagcagggaacgtacatttactttgattatgagaaatggggc
cagcgcaagaaggaaggcttcacgtttgagtaccggtacctcgaggaccgagacctccag
tga
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