Trematomus bernacchii (emerald rockcod): 117477827
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Entry
117477827 CDS
T09643
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117477827 (cica)
Transcription factors [BR:
tben03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117477827 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HTH_Cic_C
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
117477827
NCBI-ProteinID:
XP_033980482
LinkDB
All DBs
Position
Unknown
AA seq
2447 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGAGDAPEGGEKRDSDESRDRSRSPQNRKPSSAFSSNS
HSESITTDLLRARDTSEGEGLHREGLSETTVSLVMDSGKILTSSDDRSGRSAVSIDSAGS
SCSNSSTPSANNSPNPASSRKTATFKARVPKKKYTSEHCLSATGNHSNLSSSTPPPLSLS
GGVINHGSTGSGSDICVSHSDGISQSRSLMDDFHSRTTGREGPQCSSPGPPTLTLGGDRD
RPPGCEGVRDVERVLPSPLPRCSSTDTASEHSADLEVVGESHAPTQMSSHAPPSLPDALS
DALAKGLKNQRILARQLRRREDEDGGGERRDEGFSDLVFRAGVVRKVSGEFGSLEVQLNG
EKTLCRYPYRHDSPPGVVDIILDAQPPGVHPIAIGTRVCVPFGNEEGSEGQWQWYREGVV
TQVDTHPAVANRYRVLLSEERADSVDEEEEGRGTAVGPQAVWVSRQTLRLLVPPWDLDLP
PGGGQDGDEEVRDKEREREDREEIDVEQEVCRLSRGMTPSVGRGIPYPGTVPVSSTSGHN
IPTPVTPVSVLSLAPSREWEIEQDLERERDLQRQQEREREREREREHSAMQHRQQQQQHH
PYMPLTPEEDMEVSLFNMLPMGAILPGAKPMALPQHRHIVSKPPPGYLNHLSVVRGIGIP
TAHLALNPHCPPSPVLIGLDPTTAAVINSPQLPPISSSTASSRVEKASGGGASGGGGGGG
SGSGSTSSSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWRRLCSREGCSKESQR
RGYCSRHLSMRTKEMEASGGGRERGGASSTGTLTPSDLRMSGGRASSEFDWDETSRESSE
ASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAATMLVSLGGSRSGTPSYSPISNQSPFSP
TPSPSPSPLFGFRPANFSPITAPALLTPRRHRHLSGTKMGTPGVERERHLSGIVPTFQTN
LTFTVPMSPSKRKLDNHPPPPLPAIQDYLIKPEHQQLLGGVMVGDPTLGHSPAAFRVLSP
QSQPTTPSSLSFPRPRSATSRPPSSTASTPPPMLVSPTPPSPLPQEPSPRRIVPLRDSPV
IVRNPDVPLAKFSDGPLGRRERSRSREHSQPQHTATPGLQVPVPINGATTNGAVLLGNPT
STLVLVTSSSSLTPASMGHAALSSPSTMPTSSGSILSSSGSGGRERERKPEGHQDASEWG
LPQPVACHPTPTALLPLILPADSPHPAPRKQIIMGRPGTVWTNVEPRSVPVFPWHSLVPF
LEPSQSGEAAQPADGQQLVNQSKEPRCGVAPVSVERSGPPDIERGSTSCLPPTNDNPPTL
RGGADSETESDTDDPFSPGVANEATPSSGPLKRRTQSLSALPKDLDRKREKDHIRRPMNA
FMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPNEKQQYHDLAFQVKEAHFRAHPD
WKWCNKDRRKSLSEGRGTPKESRERSMSESIDPHPDPQVLLEGKGGGSGWQGGSERRGGM
FGGQHSRPRAFSQSAVHTLEQKERERELEKEGASSFRHRPLAQSMYHGEDVPSDDERMVI
CEEEGDDDVMDDSCPEGSIDLKCKERVTDSDEDEPDGQHNFQPVVRSSLPSSSPPILTSA
SAKGNGEGGGGGEEGSERNRKRGTDGGEEGSEGRAKREETAAGPNNRTLSIADPTSSPKA
LAHQGVTQVLGAVRVAPTTVTNVVRPIASTPIPITSKQVEGSATLSSVPQDKKSTLLIGG
GGPQLLPITAGGGYLSSSSSPGPVSVTPMGGLVTSLVLGGSFPVAQPVHLLATEQPHAQT
PLPAPQPQLHPSAATSSLTPPAGPKPIAQVPYILPTENPSSPQLTHQQILSLPTNASLAN
GMHSGAGLRVASVSPGSRVQTQSPGLPSKMLVPMATVRSGSTPPHPSISLVAPPLPVQNG
AATGNKIIQIAPMPVVQTSVHPGGAAAVHSGSPFPVSVATVMAPGAAPPQTVLLTSPPTR
ITYVQSGPGVTPATPQQATPPLGSAYLQSSLATLGFTAIAPVGQTLVQPPLLAQAPPLSC
QSQTPPAQASATAGRQVLTAIYPAPPAALPARVVSVAPAPPAVAPAAQDVMDPSSPLQTG
VQGSAAAALQPYEAVKVKVEVKKENLLDGPPEDGGQELSSSAASSLLTIHETAVKKEEDV
GLYIKEEYLSKEAGPRTPPPPPPGLDPPPPPPAEREPPSSSKKTKFRPPPLKKTPDSHEK
VLSETYFEERFAELPEFNPEEVLPSPTLQSLATSPRAILGSYRRKRRNSTELEVTAEEPS
SPRRKTRRLSSCSSEPSTPKSAAKCEGEFFTFDRAGTEGEDLLGDLDRVPYSSLRRTLDQ
RRALVMQLFQEHGFFPSAQATAAFQARYSDTFPSKVCLQLKIREVRQKIMQTATPGTLEP
GVLAGLAEVSPTPPHSSSFNQSAREEGGTEQHRDKGRNPEGPKSEGS
NT seq
7344 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgataaaaaagcagggccggcgctctcctccctccacccgggccaaaggggga
aagcgtcgcggagcgggggatgccccagaaggaggggagaagagagactcagacgagagc
agagacagaagcagatccccacaaaaccgaaaaccctcctctgcattttcttctaattca
cattcagagtccataacgacggatctacttagagcacgggacacttcagagggggagggg
cttcacagagaaggactgtcagaaacgacagtgtcgcttgtgatggattctgggaagatt
ttgacatcttcagacgacagatcagggaggtcagctgtgagcattgacagtgcgggtagc
agttgtagtaacagtagtacgcccagcgccaacaacagcccaaaccccgcctccagccga
aaaactgccacctttaaagcccgcgttcccaagaagaagtacacttctgaacactgcttg
tctgctactggtaaccatagcaacctttcctccagcacgcctcctccactttctcttagt
ggtggtgtcatcaaccacgggtcaacgggttcaggaagcgacatctgtgtctcgcactct
gatggcatcagtcagagccggagcctgatggacgacttccacagcaggaccactggcagg
gaggggcctcagtgcagctccccaggaccccctaccctgacgctgggaggggacagggat
agaccaccaggatgtgaaggggtgagggatgtagagcgagtgttgcccagccccttgcct
cgctgctcctctacagacactgcaagcgagcactcagctgacctggaggtagtcggcgag
tcacacgcccccacgcagatgtcttcacatgctccacccagtctccctgatgctctgtct
gatgccctggccaaagggctgaagaatcagcgtatccttgcccgccagctcagacgaaga
gaggacgaggatggaggaggtgaaaggagggatgaaggattctcagatctggtgttccgg
gctggagtcgtccgtaaggtcagcggtgaatttggaagcctggaggtgcagctgaatggt
gagaagacgctgtgccgttatccgtatcgacatgacagcccaccaggggtggtagacatt
atactagatgcccagcctcctggtgtacatccaatagctattggcactcgtgtatgcgtg
ccatttggcaacgaggagggcagcgagggccagtggcagtggtaccgggaaggtgtggtg
acccaggtggacacacaccctgctgttgccaaccgctaccgtgtcctgctgtccgaggaa
agagctgactctgtggacgaggaagaagaaggcagagggacagctgtgggcccccaggca
gtgtgggtgtcccgacagacactcaggctcctggtgccaccttgggacctggatctgcct
cctggaggaggacaagatggagacgaggaggtcagagacaaggaaagggagcgggaggac
agggaggagatagatgtggagcaggaggtgtgtcgtctgagccggggaatgacacccagc
gtggggagaggaatcccctaccctggcaccgtccctgtttcctccacgtcaggccacaac
atccccaccccagtaaccccggtgtccgtgctcagcctggcaccaagcagagagtgggaa
atagagcaagacttagagagggagagggacctccagagacaacaggaaagagagagggaa
agagagcgagaaagggagcactctgcaatgcagcatcgccaacaacagcagcaacaccac
ccgtacatgccactcacccctgaagaagacatggaggtgtccctgtttaacatgctccca
atgggggccatcctacctggggcaaaaccaatggcacttccccaacaccgccacattgtc
tctaagcccccgcctggctacctcaaccacctgtctgtggtgcggggtatcgggataccc
actgcccacctggctttgaacccccattgccctccatcacctgtcctaataggccttgac
ccaacaactgcagcagtcattaactcccctcagctccctccaatctcttcttccactgca
tcctccagagtagagaaggcctcaggaggaggtgcttccggtggaggaggaggcggtgga
tccggatcgggttcaacatcctcctcttcctcacgttctcgcacccctctgacagctgcc
cagcaaaagtacaagaagggagatgtggtgtgcacgccaacgggcatccgtaagaagttc
aacggaaagcaatggaggaggctgtgctccagggagggctgctccaaagagtctcagcgc
cggggatactgctccagacacctctccatgaggaccaaggagatggaggccagcggaggt
ggccgggaacggggcggagccagcagcacggggaccctgacgccgtctgacctccgaatg
agtggtgggagagcaagctcagagttcgactgggacgagacgtcacgcgagagcagcgag
gcaagcagccgcgggggagactcccgcccccgcctggtccttccctctctgctcccccaa
gacctctctcgatttgactttgacgagtgtgaggcagcgaccatgctggtctctctgggg
ggctcccgctcaggtacaccctcatactcccctatctccaaccagtcacccttctcccct
accccatcaccctcaccctctccgctcttcggcttccgccctgctaatttcagccccatc
acggctcctgccttgcttactccacgccgccaccgccatcttagcggcactaagatgggc
acaccaggtgtcgagcgagagcgccacctgtcggggatcgtgcccacgtttcagaccaat
ctcactttcacagtacccatgagccccagcaagaggaagctcgataaccacccgcccccc
ccgctgcctgcaatccaggactatctgatcaaacctgagcatcagcagctgttaggggga
gttatggtgggagacccaaccctgggacacagccctgccgccttcagagtcctctccccc
cagagtcagcccacgaccccttcctcactttccttcccccggcctcgtagcgccaccagc
aggccaccgtcctccactgcctctacccctccacccatgcttgtttctcccactcctccc
tcaccgctgccccaggaaccgtccccacgccgcatcgtgcccctccgtgattccccagtc
atcgttcgaaaccctgatgtccccctggccaagttctcggatggaccgttagggaggagg
gagaggagcaggtccagagagcacagtcagccccaacacacagctacacccggcctgcag
gtccccgtccccatcaacggggccaccaccaacggggcagttctgctgggaaaccccaca
tccacactggtcctggtcacctccagctcgtctctgactccagcctcaatgggccacgct
gccctgtccagcccctccaccatgcccacctcatcgggctccatcctgtcctcctctggc
tctggaggcagggagcgggagaggaaacctgagggacaccaggatgcctctgagtggggg
ctgccgcagccggtagcgtgccaccccactccaactgccctgctgccgctcatactgcca
gctgattctcctcaccctgctccacgcaagcagatcatcatgggacggcccggcactgtt
tggaccaacgtggagcctcgctcggtgccagtgttcccttggcattcactcgtccctttc
ctggagcccagccaatcaggagaggccgctcagcctgctgatggccagcagcttgtcaat
cagagcaaagagcctcgttgcggtgtggccccggtgagtgtcgagcggtccggccctcca
gacatagagaggggatccacgtcctgccttcccccaaccaatgacaatcctcctacactg
aggggcggggctgacagcgagacggagagcgatactgacgacccgttttccccgggtgtg
gccaacgaggcaacgccctcctctggccccttgaagagacgcacacagtccctcagcgcc
ctgccaaaggatttagacaggaagagggagaaggaccacatccgccgacccatgaacgca
ttcatgatcttcagtaaacgccaccgggccctggtgcaccagcggcatcccaaccaggac
aaccgcaccgtcagcaagatcctgggggagtggtggtacgctctggggcccaacgagaag
cagcagtaccacgatctggccttccaggtgaaagaggcccacttcagagcccacccagac
tggaagtggtgcaacaaggaccgcaggaagtcgctgtcagagggccgcgggacgccaaag
gagtcacgggagaggagcatgtcggagagcatagatccccatccagaccctcaggtgctg
ctggaggggaaggggggaggctcgggctggcaagggggatcagagcgtcgagggggaatg
ttcggggggcagcactcccgtccccgagccttttcccagagtgccgtgcacaccctggag
cagaaggagagagagagagaactggagaaggagggtgcaagttcttttcggcaccgaccc
ctcgctcagtccatgtaccacggcgaggacgtgcctagcgacgatgagcgtatggtcatc
tgtgaggaagaaggagacgatgatgtcatggatgactcctgtcctgaaggctccattgat
ctcaagtgtaaagagagagtgacagacagcgatgaagacgaaccagatggacagcataac
ttccagccagtggttcgctcctctctcccttcttcctctccccccatcctaacctccgcc
tcagcaaaagggaatggagaaggaggaggaggtggtgaagaggggtctgagaggaacaga
aagagaggtacagacggaggagaggaggggagcgaaggaagagccaagagagaggaaaca
gcagcaggacccaacaacaggactctgtccatagcagacccaacatccagccccaaggct
ttggcccatcagggtgtgacccaggtcctaggcgccgtccgtgtggctcccactacggtt
accaacgtggtacgacccatcgccagcacgcccatccccatcaccagcaagcaagtggaa
ggatccgccaccctcagctcagtgcctcaggacaagaaatccactctcctgattggagga
ggaggacctcagctgctgccaatcaccgcagggggtgggtacctgtcctcatcctcctcc
cctggtccagtcagtgtcactcctatggggggtctggtcactagtctagttctgggaggg
tcctttcccgtcgcccaaccagttcacctcctcgccactgagcagccgcacgcacaaacc
cccctccccgccccgcagccccagctccacccctctgccgccacctcctccctgacaccc
cccgccggccccaagccgatagcacaggtcccctacatcctgcctaccgagaacccctcc
tcccctcaactcacccaccagcaaatcctctccctgcccaccaatgcctccctggccaat
ggcatgcactcaggggcgggactcagagttgcatcagtcagccccggaagcagagttcaa
acccagtcgccgggtttgccgagcaagatgttggttcccatggcaacagtgagatcagga
tctactcctcctcatccctccatttccctggtcgctccgcctcttcctgtgcagaacggc
gccgccacaggaaacaagatcatccagatcgctcccatgccagtggtgcagaccagcgtt
caccctggcggcgcagcagctgtgcactcagggagcccttttcctgtttctgtggcgacg
gtgatggctcccggtgcagcgcccccacagacggtgcttctgacctctccacccaccagg
atcacatatgtccagtctggtccaggagtaaccccggcaacaccccaacaggccactccc
cctcttggctctgcgtatctccaatcatccctggcgaccctgggcttcaccgccatcgcc
ccggtcgggcaaactctggttcagcctccactgttagctcaagccccgcccctcagctgt
caatcacagacccctccagctcaggcctcagcaactgctggtcgtcaggtactaactgcc
atctaccctgcaccacccgctgctctgcctgctagggtggtctctgtagcccccgcaccg
cctgcagtggcccctgcggcccaggacgtgatggacccttcctccccgttacagacgggg
gtgcagggttcagcggcggcggcccttcagccttacgaggcggtgaaggtgaaggtggag
gtgaagaaggagaacctgctggatggcccgcctgaagatggaggacaggagttatcaagc
tcagctgccagctctttattgactattcatgaaacagcagttaaaaaagaggaggacgtc
ggtctgtacatcaaagaagagtacctcagcaaagaggctggacctcgcacccctcctcct
ccaccccctggtttggacccccctccccctccccctgcggaaagagagcccccctcttcc
tcaaagaagaccaagttcagacccccgccgctcaaaaagacacctgactctcacgaaaag
gtcttgtcagagacgtacttcgaggagcgttttgctgagctcccagagtttaacccagag
gaagtcctgccttcgcccactctgcagagcctggccacctcgccgagagccatcctgggg
agctaccgcaggaagagacgcaactccaccgagctggaggtgacagcagaagagcccagc
tccccgaggaggaagacccgccgtctctccagctgcagctcggagcccagcacccccaag
agcgccgccaagtgtgagggagagttcttcaccttcgacagagcaggtacagaaggagag
gatctgcttggagatctggaccgggtcccctactcgtctctgcgcagaactctggatcag
cgccgggccctggtcatgcagctgtttcaggaacatggcttctttccctcagctcaggcc
acagctgccttccaggcacgttactcggacaccttcccctccaaggtgtgtctgcagctg
aagatccgcgaggtccgtcagaagatcatgcagacggccacgcccgggaccctggagccc
ggagtgttagcggggttagctgaagtgagccccaccccgccccacagctcctctttcaat
caatcagcgcgggaggagggagggacggagcagcaccgagacaaaggccggaatccagag
gggccgaaaagcgaaggatcgtaa
DBGET
integrated database retrieval system
